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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011364 ID=TCONS_00011364|Name=TCONS_00011364|organism=Clytia hemisphaerica|type=transcript|length=2530bpRun BLAST on NCBI protein sequence of TCONS_00011364-protein >TCONS_00011364-protein ID=TCONS_00011364-protein|Name=TCONS_00011364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=568bp MVTXGLGEHVLGLKLNTSWSRLSLFSRDIATPEGGVNLYGVHPFYVGVEKRun BLAST on NCBI transcript from alignment at sc0000127:530117..543300+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011364 ID=TCONS_00011364|Name=TCONS_00011364|organism=Clytia hemisphaerica|type=transcript|length=13184bp|location=Sequence derived from alignment at sc0000127:530117..543300+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000127:530117..543300+ >TCONS_00011364 ID=TCONS_00011364|Name=TCONS_00011364|organism=Clytia hemisphaerica|type=CDS|length=22191bp|location=Sequence derived from alignment at sc0000127:530117..543300+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011364 vs. Swiss-Prot (Human)
Match: LYAG (Lysosomal alpha-glucosidase OS=Homo sapiens GN=GAA PE=1 SV=4) HSP 1 Score: 608.601 bits (1568), Expect = 0.000e+0 Identity = 296/580 (51.03%), Postives = 395/580 (68.10%), Query Frame = 2
Query: 836 GLGEHVLGLKLNTSWSRLSLFSRDIATPEGGVNLYGVHPFYVGVEKDGNAHGVFFKNSNAMDIILQPTPAITYRTIGGILEFYFLMGPTPDSVIQQYTDVVGKPVMPPYWSLGFHLCRYGYNTMDNLLKVHQRMVDNQIPQDTQWNDIDYMNSHLDFTIDPTNFADLPSFAQKLRSSGMHYILMADPAISSSQSPGSYKPYDDGISMDIFVKDINGKPLQGVVWPGHTVFPDFFNPNASVYWYNQIKNFYDNTIKFDGLWIDMNEPSNFVRGSLDGCPMDNKLETPPFVPGIIGGVLSDKTICMTAKQYTGNHYDVHSLYGHSESIATMDAMKKVLGKRSVVITRSSYPGTGHHAGHWLGDNHSQFEDLYRSISGILNFNMFGVPFVGADICGFLGDTNEELCQRWMQLGAFYPFMRNHNNINQKDQDPGAFGDGLIKTSKXXXXXXXXXXXXXXXXHFESFMTGSTVARPLFFQFPKDANTYGVDAQFMWGDGLMISPVVSQGAGNVNAYVPAGRWYEYYAGTPVD------------------SKGSSVNLPADWEKINLHLRGGKVIPTQQPALTTT 2521
GL EH+ L L+TSW+R++L++RD+A P G NLYG HPFY+ +E G+AHGVF NSNAMD++LQP+PA+++R+ GGIL+ Y +GP P SV+QQY DVVG P MPPYW LGFHLCR+GY++ +V + M P D QWND+DYM+S DFT + F D P+ Q+L G Y+++ DPAISSS GSY+PYD+G+ +F+ + G+PL G VWPG T FPDF NP A +W + + F+D + FDG+WIDMNEPSNF+RGS DGCP +N+LE PP+VPG++GG L TIC ++ Q+ HY++H+LYG +E+IA+ A+ K G R VI+RS++ G G +AGHW GD S +E L S+ IL FN+ GVP VGAD+CGFLG+T+EELC RW QLGAFYPFMRNHN++ Q+P +F + + + AL RY LLP+LYTL ++ + G TVARPLF +FPKD++T+ VD Q +WG+ L+I+PV+ G V Y P G WY+ PV+ S+G V LPA + IN+HLR G +IP Q P LTTT
Sbjct: 259 GLAEHLSPLMLSTSWTRITLWNRDLA-PTPGANLYGSHPFYLALEDGGSAHGVFLLNSNAMDVVLQPSPALSWRSTGGILDVYIFLGPEPKSVVQQYLDVVGYPFMPPYWGLGFHLCRWGYSSTAITRQVVENMTRAHFPLDVQWNDLDYMDSRRDFTFNKDGFRDFPAMVQELHQGGRRYMMIVDPAISSSGPAGSYRPYDEGLRRGVFITNETGQPLIGKVWPGSTAFPDFTNPTALAWWEDMVAEFHDQ-VPFDGMWIDMNEPSNFIRGSEDGCP-NNELENPPYVPGVVGGTLQAATICASSHQFLSTHYNLHNLYGLTEAIASHRALVKARGTRPFVISRSTFAGHGRYAGHWTGDVWSSWEQLASSVPEILQFNLLGVPLVGADVCGFLGNTSEELCVRWTQLGAFYPFMRNHNSLLSLPQEPYSFSEPAQQAMRKALTLRYALLPHLYTLFHQAHVAGETVARPLFLEFPKDSSTWTVDHQLLWGEALLITPVLQAGKAEVTGYFPLGTWYDLQT-VPVEALGSLPPPPAAPREPAIHSEGQWVTLPAPLDTINVHLRAGYIIPLQGPGLTTT 834 HSP 2 Score: 150.984 bits (380), Expect = 2.508e-37 Identity = 83/210 (39.52%), Postives = 116/210 (55.24%), Query Frame = 3
Query: 219 AVPLDTCDVDDVHRFDCFPDEGASESKCQERGCCWVPASQNKDQYGVPLNVPYCFYGRGSFSYNKCGGADTDTGFYVDLCMKGKGSPYGDSIAKIRAEFSMETQTRLRVKIYDPANQRYEVPIPVPKVTTKASSTDYDVTVVESPFGFKVTRKSTGTVIFNTAIPTQGFIFADQYLQIASVLPSSNIYGLGEHVLGLKLNTSWSRXVLVN 848
AVP CDV RFDC PD+ ++ +C+ RGCC++PA Q G + P+CF+ SY + ++ G Y + + + I +R + MET+ RL I DPAN+RYEVP+ P V ++A S Y V E PFG V R+ G V+ NT + FADQ+LQ+++ LPS I GL EH+ L L+TSW+R L N
Sbjct: 77 AVPTQ-CDVPPNSRFDCAPDKAITQEQCEARGCCYIPAKQGLQ--GAQMGQPWCFFPPSYPSYKLENLSSSEMG-YTATLTRTTPTFFPKDILTLRLDVMMETENRLHFTIKDPANRRYEVPLETPHVHSRAPSPLYSVEFSEEPFGVIVRRQLDGRVLLNTTVAP--LFFADQFLQLSTSLPSQYITGLAEHLSPLMLSTSWTRITLWN 280 The following BLAST results are available for this feature:
BLAST of TCONS_00011364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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