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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011363 ID=TCONS_00011363|Name=TCONS_00011363|organism=Clytia hemisphaerica|type=transcript|length=6806bpRun BLAST on NCBI transcript from alignment at sc0000127:502310..519815+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011363 ID=TCONS_00011363|Name=TCONS_00011363|organism=Clytia hemisphaerica|type=transcript|length=17506bp|location=Sequence derived from alignment at sc0000127:502310..519815+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011363 vs. Swiss-Prot (Human)
Match: LAMB1 (Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE=1 SV=2) HSP 1 Score: 409.838 bits (1052), Expect = 4.847e-116 Identity = 301/1016 (29.63%), Postives = 464/1016 (45.67%), Query Frame = 2
Query: 83 VLCFMFL---RKTLLTYAQNNDYSCYDFLYNPRVCLPGPIDIAENHEINVDDKYTCGTPTTK-YCRSA---EPSGCFICNASSTMNS--HPVRHMTDKDFPLNFWDFGYKPTWWQSITWWDAKQMNILTDGTLKINLTLSMNKSYDLTGSIQLTFYSSKPHAFVIERSSDFGNSWKPYRYYADQCALRFPRIKLESQRNDEREVYCIEHQSLDAVQGSQVKF---EPSYTKDNFWSKDIQDYITATDFRISLQYPWTDNNEKINQE-SFLNKYYYDITDVQIHGRCHCNGHAPYCDS------------NKQCFCQHNTAGTDCEKCIPLFNNKPWKPAEASNKPNPCEACNCNNHAGSCHYNETL-------EHGVCDECRNGTTGYHCERCDDFHYRNISLPINDERVCIACDCFLPGTTNNGKC--LQNSTINQAAGQCPCKPNVFGMRCDECKDGYFGLRLSPDGNCEACNCSINGTIQGETNCDQQTGKCRCKPTIGGRTCSQCQPGYFNFPETLTXXXXXXXXKIGGSYNETCDQETGSCYCRFGISGRHCDQITSGTYVPSFNHYILEAEQ-----GGGLLERISDIDGYGQRFSGYGYALVNASGSVELTFTPDM--TRLFHIQIRY---------KELVHPQNITMELHFSNTGSTI-----QLISTANILQRGSDKMILAK-VILVSGGNYTFKI-------TNIDTNDQSMMLDSLVLLPDYEGVDLHRNSGPSVEELIAN----------CWNESLSSMTFEVTEGCKDVVFSTNIEIYDGSQECKCDTIGSWNTTCETYGGQCYCKEGVMGRKCDQCMAGYFNFTTNGCQKCECDSTGSTDFACNVESGQCSCKKNIITRTCSQCQTNYFGFGTLEGCRDCGCNMNGSS----SLQCLDNGICVCKESTQGQKCDRCQINYYG----FSGTGCNRCGCNEDGSVSLQ----CDQDTG----KCSCKSNVIIEKCSSCKTGYFNLMKENHQGCQECFCFNKTDT 2863
+L F FL R + Y C + C P D+ + TCG + YC + E CFICN+ + +P H+ + + F K WWQS +G + + L + + T I +TF + +P A +IERSSDFG +W YRY+A C FP I + + + + ++ +V F +P++ ++ +S IQ+ + T+ RI T + ++ KYYY + D+ + G C C GHA C + C C+HNT G +CE C+ +++ PW+PAE N N C+ CNCN H+ SCH++ + GVCD+C++ T G +CE+C F+Y++ I D C C C G+ N G C + + AGQC CK NV G CD CK+G++ L C++C C+ GTI G CD +TG C CK + G+ C QC P ++ L +GG+ N +C E+G C CR + GR C+++ G Y + +HY+ EAE+ G ++ER I ++G G+ V +E F ++ + + I IRY K ++ Q S G+TI Q++S L GS ++L + V G NYT ++ ++ D ++DSLVL+P + +D+ G S + ++ N C S S + +T+ C++++FS + ++ C+CD GS ++ C+ GGQC C+ V+GR C++C G F F +GC+ CEC GS + CN +GQC C + + R C +C ++GF + C+ C CN + + +CL+ C++ T G C+RC YYG SG C C C + Q C QD C C I +C C +GYF E CQ C C N DT
Sbjct: 6 LLAFSFLALCRARVRAQEPEFSYGCAE-----GSCYPATGDLLIGRAQKLSVTSTCGLHKPEPYCIVSHLQEDKKCFICNSQDPYHETLNPDSHLIE-NVVTTFAPNRLK-IWWQS------------ENGVENVTIQLDLEAEFHFTHLI-MTFKTFRPAAMLIERSSDFGKTWGVYRYFAYDCEASFPGISTGPMKKVDDIICDSRYSDIEPSTEGEVIFRALDPAFKIEDPYSPRIQNLLKITNLRIKFVKLHTLGDNLLDSRMEIREKYYYAVYDMVVRGNCFCYGHASECAPVDGFNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNS-NACKKCNCNEHSISCHFDMAVYLATGNVSGGVCDDCQHNTMGRNCEQCKPFYYQHPERDIRDPNFCERCTCDPAGSQNEGICDSYTDFSTGLIAGQCRCKLNVEGEHCDVCKEGFYDLSSEDPFGCKSCACNPLGTIPGGNPCDSETGHCYCKRLVTGQHCDQCLPEHWGLSNDLDGCRPCDC-DLGGALNNSCFAESGQCSCRPHMIGRQCNEVEPGYYFATLDHYLYEAEEANLGPGVSIVER-QYIQDRIPSWTGAGFVRVPEGAYLEF-FIDNIPYSMEYDILIRYEPQLPDHWEKAVITVQRPGRIPTSSRCGNTIPDDDNQVVS----LSPGSRYVVLPRPVCFEKGTNYTVRLELPQYTSSDSDVESPYTLIDSLVLMPYCKSLDIFTVGG-SGDGVVTNSAWETFQRYRCLENSRSVVKTPMTDVCRNIIFSISALLHQTGLACECDPQGSLSSVCDPNGGQCQCRPNVVGRTCNRCAPGTFGFGPSGCKPCECHLQGSVNAFCNPVTGQCHCFQGVYARQCDRCLPGHWGFPS---CQPCQCNGHADDCDPVTGECLN-----CQDYTMGHNCERCLAGYYGDPIIGSGDHCRPCPCPDGPDSGRQFARSCYQDPVTLQLACVCDPGYIGSRCDDCASGYFGNPSEVGGSCQPCQCHNNIDT 984 HSP 2 Score: 97.0561 bits (240), Expect = 1.186e-19 Identity = 93/314 (29.62%), Postives = 126/314 (40.13%), Query Frame = 2
Query: 899 CHCNGHAPYCDS-NKQCF-CQHNTAGTDCEKCIPLFNNKPWKPAEASNKPNPCE----------------------ACNCN-NHAGS------------------------CHYNETL--------EHGVCDECRNGTTGYHCERCDDFHYRNISLPINDERVCIACDCFLPGTTNNGKCLQNSTINQAAGQCPCKPNVFGMRCDECKDGYFGLRLSPDGNCEACNCSINGTIQGETNCDQQTGKCRCKPTIGGRTCSQCQPGYFNFPETLTXXXXXXXXKIGGSYNETCDQETGSCYCRFGISGRHCDQITSG 1669
C CNGHA CD +C CQ T G +CE+C+ + P + +P PC AC C+ + GS CH N E G C +C T G HC+ C F Y +L ++ C C C GT + ++A GQC C PNV G CD C + +L+ C+ CNC N +C++ TG+C+C P GGRTCS+CQ ++ P+ C+ G CDQ TG C C G+ G CD+ T G
Sbjct: 867 CQCNGHADDCDPVTGECLNCQDYTMGHNCERCLAGYYGDPIIGSGDHCRPCPCPDGPDSGRQFARSCYQDPVTLQLACVCDPGYIGSRCDDCASGYFGNPSEVGGSCQPCQCHNNIDTTDPEACDKETGRCLKCLYHTEGEHCQFCR-FGYYGDAL----QQDCRKCVCNYLGTVQEHCNGSDCQCDKATGQCLCLPNVIGQNCDRCAPNTW--QLASGTGCDPCNC--NAAHSFGPSCNEFTGQCQCMPGFGGRTCSECQELFWGDPDVECRACDCDPR---GIETPQCDQSTGQCVCVEGVEGPRCDKCTRG 1168 HSP 3 Score: 93.5893 bits (231), Expect = 1.284e-18 Identity = 82/274 (29.93%), Postives = 118/274 (43.07%), Query Frame = 2
Query: 899 CHCNGHA-PYCDS-NKQCFCQHNTAGTDCEKCIPLFNNKPWKPAEASNKPNPCEACNCNNHAGSCHYNETLEHGVCDECRNGTTGYHCERCDDFHYRNISLPINDERVCIACDCFLPGTTNNGK-----CLQNSTINQAAGQCPCKPNVFGMRCDECKDGYFGLRLSPDGNCEACNCSINGTIQGETNCDQQTGKC-RCKPTIGGRTCSQCQPGYFNFPETLTXXXXXXXXKIGGSYNE-------TCDQETGSCYCRFGISGRHCDQITSGTY 1675
CH G +C+ QC C C++C+P P C+ C CN HA C G C C++ T G++CERC +Y + + D C C C P ++G+ C Q+ Q A C C P G RCD+C GYFG G+C+ C C N CD++TG+C +C G C C+ GY+ + L +C +C C G+ E CD+ TG C C + G++CD+ T+
Sbjct: 823 CHLQGSVNAFCNPVTGQCHCFQGVYARQCDRCLPGHWGFP-----------SCQPCQCNGHADDCDPVT----GECLNCQDYTMGHNCERCLAGYYGDPIIGSGDH--CRPCPC--PDGPDSGRQFARSCYQDPVTLQLA--CVCDPGYIGSRCDDCASGYFGNPSEVGGSCQPCQCHNNIDTTDPEACDKETGRCLKCLYHTEGEHCQFCRFGYYG--DALQQDCRKCVCNYLGTVQEHCNGSDCQCDKATGQCLCLPNVIGQNCDRCAPNTW 1073 HSP 4 Score: 91.6633 bits (226), Expect = 4.138e-18 Identity = 67/229 (29.26%), Postives = 98/229 (42.79%), Query Frame = 2
Query: 2198 CKDVVFSTNIEIYDGSQECKC-DTIGSWNT-TCETYGGQCY-CKEGVMGRKCDQCMAGYF-NFTTNGCQKCECDSTGS-------TDFACNVESGQCSCKKNIITRTCSQCQTNYFGFGTLEGCRDCGCNMNGSSSLQCLD-NGICVCKESTQGQKCDRCQINYYGFSGTGCNRCGCNEDGSVSLQCDQDTGKCSCKSNVIIEKCSSCKTGYFNLMKENHQGCQECFCF 2848
C F E+ Q C+C + I + + C+ G+C C G C C GY+ + C+KC C+ G+ +D C+ +GQC C N+I + C +C N + + GC C CN S C + G C C G+ C CQ ++G C C C+ G + QCDQ TG+C C V +C C GY + + C +CF
Sbjct: 958 CASGYFGNPSEVGGSCQPCQCHNNIDTTDPEACDKETGRCLKCLYHTEGEHCQFCRFGYYGDALQQDCRKCVCNYLGTVQEHCNGSDCQCDKATGQCLCLPNVIGQNCDRCAPNTWQLASGTGCDPCNCNAAHSFGPSCNEFTGQCQCMPGFGGRTCSECQELFWGDPDVECRACDCDPRGIETPQCDQSTGQCVCVEGVEGPRCDKCTRGYSGVFP-DCTPCHQCFAL 1185 The following BLAST results are available for this feature:
BLAST of TCONS_00011363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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