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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011360 ID=TCONS_00011360|Name=TCONS_00011360|organism=Clytia hemisphaerica|type=transcript|length=1071bp
CGATGGCCTGCGATGGCAGGGATGATCGAAAGCAGTAAAAATGGCGACTT
TACATCCACTTGTTTTACTGGCCATTTTGCTTGGTTCTTTTCTACAAAAT
GTGACAACGGATGATATCAATAATCTAAAGTCACAGANaaAAGGTTTGAC
AGCTCATGTTTTACGAGCAAATCAAGAGATTCAAATACTGAAAACCAAAG
ACCGTACCCGGAATACTTATTGTCAAGTAACATCTGCTTTATGTGGGAAT
TGCCTTTGCGTTGAGGACTACAACTTAGTTGAGAAATTTTACTGCGATTG
TCGAAACAAGCCTAAAGTGCGCGATTGCAAAGCGCACTACGAGAATGGTG
AAAGAATCAATGGTTTATATTTGATCCATAACGACATCAAAGGTGCGGTT
GTTCAAGTGTTTTGTGACCAAAACGACGATAAAGGCGGATGGACGGTTAT
CCAGCGACGTGTTGACGGAAGCACAAACTTCCAACGTAACTGGAACGCCT
ATAAAAACGGATTCGGTCAACTGCAACGTGAGTTTTGGTTGGGTAACCAT
CATATCCATCAACTCACAGCACAAGCTTTTTTGAGGGGCACGACTGTCCG
CTTCGACATGATCAGACGGAGTGATTCGAAAAAAGTATGGGCCAAATATT
CCACATTTTCAGTCAATGCCGAAGCAACAAAATATCAATTGGCAATTAGT
GGGTATTCTGGAATCGCCGGCGACCATATGCGGAAACACAGCGGGAACAA
ATTCTCGACTTTTGATCAGGATAATGACGATTACAGCAGCGATAATTGTG
CGAGTAGTAACGATGGAGCATGGTGGTTCTATGGCTGCCATATGGTCAAT
CTCAATGGAGCATTTGATGCTTTGCTGAATCAACACAGATGGCATGCGAT
TTGGTGGGGAAGTGACTATGACGATGGTCGAATGATGTTCTCCGAAATCA
AAGTCCGCCGAAATTAAAGCTTTGTCTTCTTGTTATTGTAATACATATTA
TGTGTTATATTGTAATATATATTATGTTATATTGTAATATATATTATGTG
TTATATTTACCAGCAAAGAAA Run BLAST on NCBI protein sequence of TCONS_00011360-protein >TCONS_00011360-protein ID=TCONS_00011360-protein|Name=TCONS_00011360-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MATLHPLVLLAILLGSFLQNVTTDDINNLKSQXKGLTAHVLRANQEIQIL
KTKDRTRNTYCQVTSALCGNCLCVEDYNLVEKFYCDCRNKPKVRDCKAHY
ENGERINGLYLIHNDIKGAVVQVFCDQNDDKGGWTVIQRRVDGSTNFQRN
WNAYKNGFGQLQREFWLGNHHIHQLTAQAFLRGTTVRFDMIRRSDSKKVW
AKYSTFSVNAEATKYQLAISGYSGIAGDHMRKHSGNKFSTFDQDNDDYSS
DNCASSNDGAWWFYGCHMVNLNGAFDALLNQHRWHAIWWGSDYDDGRMMF
SEIKVRRN Run BLAST on NCBI transcript from alignment at sc0000127:447045..448413+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011360 ID=TCONS_00011360|Name=TCONS_00011360|organism=Clytia hemisphaerica|type=transcript|length=1369bp|location=Sequence derived from alignment at sc0000127:447045..448413+ (Clytia hemisphaerica)
CGATGGCCTGCGATGGCAGGGATGATCGAAAGCAGTAAAAATGGCGACTT
TACATCCACTTGTTTTACTGGCCATTTTGCTTGGTTCTTTTCTACAAAAT
GTGACAACGGATGATATCAATAATCTAAAGTCACAGANaaattttggcgg
gaacttaatttggcggatttcagtcaaatccgccaaatccgccaaatttt
ctttccgccaaaatttcttccttacAAGGTTTGACAGCTCATGTTTTACG
AGCAAATCAAGAGATTCAAATACTGAAAACCAAAGACCGTACCCGGAATA
CTTATTGTCAAGTAACATCTGCTTTATGTGGGAATTGCCTTTGCGTTGAG
GACTACAACTTAGTTGAGAAATTTTACTGCGATTGTCGAAACAAGCCTAA
AGTGCGCGATTGCAAAGCGCACTACGAGAATGGTGAAAGAATCAATGGTT
TATATTTGATCCATAACGACATCAAAGGTAGGTTTGTCAATCATTTTCAC
TTGCGATACTTTTTGTCTTGTTTATGCTGGGGCcaaattaatattttgtt
aTACGGGGGGAAATGTAAATTAAATTCATAAAATtaatttcttgttttat
ttacaaatcaatttctttctttactGGCAAATCTACTTATCTACTTAGGC
TACCTTTCTTATTTCTTTAACATTGTTTAATTATCTCCAGGTGCGGTTGT
TCAAGTGTTTTGTGACCAAAACGACGATAAAGGCGGATGGACGGTTATCC
AGCGACGTGTTGACGGAAGCACAAACTTCCAACGTAACTGGAACGCCTAT
AAAAACGGATTCGGTCAACTGCAACGTGAGTTTTGGTTGGGTAACCATCA
TATCCATCAACTCACAGCACAAGCTTTTTTGAGGGGCACGACTGTCCGCT
TCGACATGATCAGACGGAGTGATTCGAAAAAAGTATGGGCCAAATATTCC
ACATTTTCAGTCAATGCCGAAGCAACAAAATATCAATTGGCAATTAGTGG
GTATTCTGGAATCGCCGGCGACCATATGCGGAAACACAGCGGGAACAAAT
TCTCGACTTTTGATCAGGATAATGACGATTACAGCAGCGATAATTGTGCG
AGTAGTAACGATGGAGCATGGTGGTTCTATGGCTGCCATATGGTCAATCT
CAATGGAGCATTTGATGCTTTGCTGAATCAACACAGATGGCATGCGATTT
GGTGGGGAAGTGACTATGACGATGGTCGAATGATGTTCTCCGAAATCAAA
GTCCGCCGAAATTAAAGCTTTGTCTTCTTGTTATTGTAATACATATTATG
TGTTATATTGTAATATATATTATGTTATATTGTAATATATATTATGTGTT
ATATTTACCAGCAAAGAAA Coding sequence (CDS) from alignment at sc0000127:447045..448413+ >TCONS_00011360 ID=TCONS_00011360|Name=TCONS_00011360|organism=Clytia hemisphaerica|type=CDS|length=2781bp|location=Sequence derived from alignment at sc0000127:447045..448413+ (Clytia hemisphaerica)
ATGGCGACTTTACATCCACTTGTTTTACTGGCCATTTTGCTTGGTTCTTT
TCTACAAAATGTGACAACGGATGATATCAATAATCTAAAGTCACAGANaa
AAGGTTTGACAGCTCATGTTTTACGAGCAAATCAAGAGATTCAAATACTG
AAAACCAAAGACCGTACCCGGAATACTTATTGTCAAGTAACATCTGCTTT
ATGTGGGAATTGCCTTTGCGTTGAGGACTACAACTTAGTTGAGAAATTTT
ACTGCGATTGTCGAAACAAGCCTAAAGTGCGCGATTGCAAAGCGCACTAC
GAGAATGGTGAAAGAATCAATGGTTTATATTTGATCCATAACGACATCAA
AGGTGCGGTTGTTCAAGTGTTTTGTGACCAAAACGACGATAAAGGCGGAT
GGACGGTTATCCAGCGACGTGTTGACGGAAGCACAAACTTCCAACGTAAC
TGGAACGCCTATAAAAACGGATTCGGTCAACTGCAACGTGAGTTTTGGTT
GGGTAACCATCATATCCATCAACTCACAGCACAAGCTTTTTTGAGGGGCA
CGACTGTCCGCTTCGACATGATCAGACGGAGTGATTCGAAAAAAGTATGG
GCCAAATATTCCACATTTTCAGTCAATGCCGAAGCAACAAAATATCAATT
GGCAATTAGTGGGTATTCTGGAATCGCCGGCGACCATATGCGGAAACACA
GCGGGAACAAATTCTCGACTTTTGATCAGGATAATGACGATTACAGCAGC
GATAATTGTGCGAGTAGTAACGATGGAGCATGGTGGTTCTATGGCTGCCA
TATGGTCAATCTCAATGGAGCATTTGATGCTTTGCTGAATCAACACAGAT
GGCATGCGATTTGGTGGGGAAGTGACTATGACGATGGTCGAATGATGTTC
TCCGAAATCAAAGTCCGCCGAAATTAAATGGCGACTTTACATCCACTTGT
TTTACTGGCCATTTTGCTTGGTTCTTTTCTACAAAATGTGACAACGGATG
ATATCAATAATCTAAAGTCACAGANaaAAGGTTTGACAGCTCATGTTTTA
CGAGCAAATCAAGAGATTCAAATACTGAAAACCAAAGACCGTACCCGGAA
TACTTATTGTCAAGTAACATCTGCTTTATGTGGGAATTGCCTTTGCGTTG
AGGACTACAACTTAGTTGAGAAATTTTACTGCGATTGTCGAAACAAGCCT
AAAGTGCGCGATTGCAAAGCGCACTACGAGAATGGTGAAAGAATCAATGG
TTTATATTTGATCCATAACGACATCAAAGGTGCGGTTGTTCAAGTGTTTT
GTGACCAAAACGACGATAAAGGCGGATGGACGGTTATCCAGCGACGTGTT
GACGGAAGCACAAACTTCCAACGTAACTGGAACGCCTATAAAAACGGATT
CGGTCAACTGCAACGTGAGTTTTGGTTGGGTAACCATCATATCCATCAAC
TCACAGCACAAGCTTTTTTGAGGGGCACGACTGTCCGCTTCGACATGATC
AGACGGAGTGATTCGAAAAAAGTATGGGCCAAATATTCCACATTTTCAGT
CAATGCCGAAGCAACAAAATATCAATTGGCAATTAGTGGGTATTCTGGAA
TCGCCGGCGACCATATGCGGAAACACAGCGGGAACAAATTCTCGACTTTT
GATCAGGATAATGACGATTACAGCAGCGATAATTGTGCGAGTAGTAACGA
TGGAGCATGGTGGTTCTATGGCTGCCATATGGTCAATCTCAATGGAGCAT
TTGATGCTTTGCTGAATCAACACAGATGGCATGCGATTTGGTGGGGAAGT
GACTATGACGATGGTCGAATGATGTTCTCCGAAATCAAAGTCCGCCGAAA
TTAAATGGCGACTTTACATCCACTTGTTTTACTGGCCATTTTGCTTGGTT
CTTTTCTACAAAATGTGACAACGGATGATATCAATAATCTAAAGTCACAG
ANaaAAGGTTTGACAGCTCATGTTTTACGAGCAAATCAAGAGATTCAAAT
ACTGAAAACCAAAGACCGTACCCGGAATACTTATTGTCAAGTAACATCTG
CTTTATGTGGGAATTGCCTTTGCGTTGAGGACTACAACTTAGTTGAGAAA
TTTTACTGCGATTGTCGAAACAAGCCTAAAGTGCGCGATTGCAAAGCGCA
CTACGAGAATGGTGAAAGAATCAATGGTTTATATTTGATCCATAACGACA
TCAAAGGTGCGGTTGTTCAAGTGTTTTGTGACCAAAACGACGATAAAGGC
GGATGGACGGTTATCCAGCGACGTGTTGACGGAAGCACAAACTTCCAACG
TAACTGGAACGCCTATAAAAACGGATTCGGTCAACTGCAACGTGAGTTTT
GGTTGGGTAACCATCATATCCATCAACTCACAGCACAAGCTTTTTTGAGG
GGCACGACTGTCCGCTTCGACATGATCAGACGGAGTGATTCGAAAAAAGT
ATGGGCCAAATATTCCACATTTTCAGTCAATGCCGAAGCAACAAAATATC
AATTGGCAATTAGTGGGTATTCTGGAATCGCCGGCGACCATATGCGGAAA
CACAGCGGGAACAAATTCTCGACTTTTGATCAGGATAATGACGATTACAG
CAGCGATAATTGTGCGAGTAGTAACGATGGAGCATGGTGGTTCTATGGCT
GCCATATGGTCAATCTCAATGGAGCATTTGATGCTTTGCTGAATCAACAC
AGATGGCATGCGATTTGGTGGGGAAGTGACTATGACGATGGTCGAATGAT
GTTCTCCGAAATCAAAGTCCGCCGAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011360-exon-sc0000127-1491911889:447045..447184 | TCONS_00011360-exon-sc0000127-1491911889:447045..447184 | Clytia hemisphaerica | exon |
| TCONS_00011360-exon-sc0000127-1510915933:447045..447184 | TCONS_00011360-exon-sc0000127-1510915933:447045..447184 | Clytia hemisphaerica | exon |
| TCONS_00011360-exon-sc0000127-1575043694:447045..447184 | TCONS_00011360-exon-sc0000127-1575043694:447045..447184 | Clytia hemisphaerica | exon |
| TCONS_00011360-exon-sc0000127-1491911889:447270..447521 | TCONS_00011360-exon-sc0000127-1491911889:447270..447521 | Clytia hemisphaerica | exon |
| TCONS_00011360-exon-sc0000127-1510915933:447270..447521 | TCONS_00011360-exon-sc0000127-1510915933:447270..447521 | Clytia hemisphaerica | exon |
| TCONS_00011360-exon-sc0000127-1575043694:447270..447521 | TCONS_00011360-exon-sc0000127-1575043694:447270..447521 | Clytia hemisphaerica | exon |
| TCONS_00011360-exon-sc0000127-1491911889:447735..448413 | TCONS_00011360-exon-sc0000127-1491911889:447735..448413 | Clytia hemisphaerica | exon |
| TCONS_00011360-exon-sc0000127-1510915933:447735..448413 | TCONS_00011360-exon-sc0000127-1510915933:447735..448413 | Clytia hemisphaerica | exon |
| TCONS_00011360-exon-sc0000127-1575043694:447735..448413 | TCONS_00011360-exon-sc0000127-1575043694:447735..448413 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127 | supercontig | sc0000127:447045..448413 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00011360 vs. Swiss-Prot (Human)
Match: TENA (Tenascin OS=Homo sapiens GN=TNC PE=1 SV=3) HSP 1 Score: 166.007 bits (419), Expect = 2.720e-44 Identity = 88/217 (40.55%), Postives = 121/217 (55.76%), Query Frame = 2
Query: 311 PKVRDCKAHYENGERINGLYLIH-NDIKGAVVQVFCDQNDDKGGWTVIQRRVDGSTNFQRNWNAYKNGFGQLQREFWLGNHHIHQLTAQAFLRGTTVRFDMIRRSDSKKVWAKYSTFSVNAEATKYQLAISGYSGIAGDHMRKHSGNKFSTFDQDNDDYSSDNCASSNDGAWWFYGCHMVNLNGAFDALLNQHRWHAIWWGSDYDDGRMMFSEIKVR 958
P +DC NG+ +GLY I+ N K ++VFCD D GGW V RR +G NF +NW AY GFG + EFWLG +++++TAQ +R D+ R + +A Y FSV T+Y+L + GYSG AGD M H+G FSTFD+D D + NCA S GA+W+ CH VNL G + N H W+ + + F+E+K+R
Sbjct: 1979 PFPKDCSQAMLNGDTTSGLYTIYLNGDKAEALEVFCDMTSDGGGWIVFLRRKNGRENFYQNWKAYAAGFGDRREEFWLGLDNLNKITAQG---QYELRVDL--RDHGETAFAVYDKFSVGDAKTRYKLKVEGYSGTAGDSMAYHNGRSFSTFDKDTDS-AITNCALSYKGAFWYRNCHRVNLMGRYGD--NNHSQGVNWFHWKGHEHSIQFAEMKLR 2187
The following BLAST results are available for this feature:
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