TCONS_00011356 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011356
Unique NameTCONS_00011356
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011356 ID=TCONS_00011356|Name=TCONS_00011356|organism=Clytia hemisphaerica|type=transcript|length=1735bp
TGATAATTGGATCACATTATCATCAAGAGAGTTAGTtacatatttctttt
ttctttaaattctcTCCAGGGAATAACAGTAACTCATAAATAGTTGAATT
TTGTCAGTCCATAATCAAACAGTCTTCAAACGACAACAACACAAGACAGT
AGAAGCTCCTTCAGTGTTCATTCAATAACTTTGCAAAGATGAGAGAAATC
GTTCACTTACAAGCTGGCCAATGTGGAAACCAAATTGGAGCAAAGttttg
gGAAGTGATCTCGGACGAGCACGGTATTGACCCAACTGGAACTTATCATG
GCGATTCAGATTTGCAATTGGAAAGAATAAATGTTTATTATAATGAAGCT
ACTGGTGGGAAATATGTTCCAAGGGCGGTTCTCGTCGACTTGGAACCTGG
TACTATGGATTCAGTGCGTTCCGGACCTTTCGGCCAAATCTTTCGACCGG
ACAATTTTGTTTTCGGACAGTCAGGAGCTGGCAACAACTGGGCCAAAGGA
CATTACACTGAAGGAGCTGAACTTGTCGATTCAGTGTTGGATGTAGTACG
CAAAGAAGCTGAAAGTTGTGATTGCTTACAAGGATTTCAGTTAACACATT
CCCTTGGTGGAGGAACTGGATCCGGTATGGGAACTCTTCTTATTTCCAAA
ATCCGTGAAGAATATCCCGACAGAATCATGAACACATTCAGTGTTGTTCC
TTCCCCAAAAGTCTCCGATACTGTCGTCGAACCTTACAACGCCACACTCT
CTGTTCATCAATTGGTCGAAAATACAGACGAAACTTTCTGCATTGACAAT
GAAGCTCTGTACGATATTTGTTTCCGAACCTTGAAATTGACCACGCCCAC
TTATGGCGATTTGAATCATTTGGTGTCCGCAACTATGAGTGGTGTTACAA
CTTGCCTTCGATTCCCCGGACAGTTGAACGCAGATCTTCGTAAACTTGCT
GTCAACATGGTTCCCTTCCCCCGTCTCCATTTCTTCATGCCCGGATTCGC
TCCTCTCACATCACGTGGTTCACAACAATACCGTGCTTTGACCGTCCCTG
AACTCACTCAACAAATGTTCGACGCCAAAAACATGATGGCTGCATGTGAT
CCCAGACATGGGCGTTACTTAACTGTAGCTGCAATGTTCCGTGGTCGAAT
GTCAATGAAAGAAGTGGACGAACAGATGTTGAATGTCCAAAACAAGAACA
GTTCATACTTTGTCGAATGGATCCCCAATAACGTCAAAACAGCCGTTTGT
GACATCCCACCACGTGGCTTAAAGATGGCAGCCACGTTCATTGGTAACAG
TACCGCTATTCAAGAATTATTCAAGAGAATTAGTGAACAGTTCACAGCTA
TGTTCAGAAGAAAAGCTTTCTTGCATTGGTATACAGGAGAAGGTATGGAC
GAAATGGAATTCACAGAAGCAGAATCGAACATGAATGATTTGGTGTCTGA
ATATCAACAATATCAAGATGCCACCGCAGATGATGAGGGAGAATTtgaag
aagaggaagaagaagatGCTGAGTAAGCAATTTTCAAACAATCCCAAAAA
TGCCACCGCAATTGAAGTGTCATTCGTATAtaagttttctttcattttta
tattcctttattactttttagtTAGAAATTTTGTAGATATGCTATAGAAA
GTATCAATGACGGTAGTGCAGCCGTGtatttattttatcatttatcgtaa
aagaaatattcaaaatgaaagttgCCAGTATTTCC
Run BLAST on NCBI

protein sequence of TCONS_00011356-protein

>TCONS_00011356-protein ID=TCONS_00011356-protein|Name=TCONS_00011356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVY
YNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN
WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETF
CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADL
RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
AACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVK
TAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG
EGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGEFEEEEEEDAE
Run BLAST on NCBI

transcript from alignment at sc0000127:371827..375277+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011356 ID=TCONS_00011356|Name=TCONS_00011356|organism=Clytia hemisphaerica|type=transcript|length=3451bp|location=Sequence derived from alignment at sc0000127:371827..375277+ (Clytia hemisphaerica)
TGATAATTGGATCACATTATCATCAAGAGAGTTAGTtacatatttctttt
ttctttaaattctcTCCAGGGAATAACAGTAACTCATAAATAGTTGAATT
TTGTCAGTCCATAATCAAACAGTCTTCAAACGACAACAACACAAGACAGT
AGAAGCTCCTTCAGTGTTCATTCAATAACTTTGCAAAGATGAGAGAAATC
GTTCACTTACAAGCTGGCCAATGTGGAAACCAAATTGGAGCAAAGGTGAA
GATAATTTTTGgttactttgttgaaaatttcaatttttttcctaatttct
gtatataaattaattaaaaagaaGTTTTGcgcaattttaatttttgtaaa
tgaagCCCTACGTCGTTTACTTCTTTCAACTTATGGGTTTTCTACATTCA
TTTCTACATTCATGGCCTTTCTGTTGAGATATCGCCCTTGACTTGAGATG
ATTCAATTCCTTTTAAACCCTTATCTtcaatctttcaattttcaaaaaat
tttagttttggGAAGTGATCTCGGACGAGCACGGTATTGACCCAACTGGA
ACTTATCATGGCGATTCAGATTTGCAATTGGAAAGAATAAATGTTTATTA
TAATGAAGCTACTGGTAAGCAGTGAAATTAAACGTCATGAGTAATTAAAC
AAGTCAAGTTTCAAAGACACTCAAAGTTAATGGGAACCCTTCCAAATGTG
AGCCAAAAAATAGGAATTTCGGAAACTCATTCAATGAGGCAGAAAAACTT
GTGACTTGAGATTAACGTCAGGTTTTTGTAAAGCATCCCCTTAATTTTAA
TCAAATGGTCACAGagcatttttacccatttcGGACGTATATAGATATGG
CTTATTTAGAATTTAGAGATTGTTAcattaatacattttttatcaGGTGG
GAAATATGTTCCAAGGGCGGTTCTCGTCGACTTGGAACCTGGTACTATGG
ATTCAGTGCGTTCCGGACCTTTCGGCCAAATCTTTCGACCGGACAATTTT
GTTTTCGGACAGTCAGGAGCTGGCAACAACTGGGCCAAAGGACATTACAC
TGAAGGAGCTGAACTTGTCGATTCAGTGTTGGATGTAGTACGCAAAGAAG
CTGAAAGTTGTGATTGCTTACAAGGATTTCAGTTAACACATTCCCTTGGT
GGAGGTTCGTACTAATTTTACTGTCTTTTGAATGTTCCCTGGTTTCTGAT
GTTGATCCTGGTGATTTACAGTGACGTTCTAATTTTTGCAAGAGACattg
tgtttttgaaaaatattttttaacgcACTTGATGAAAAGTTTTATTATAC
AAACAATTTATAGAGTAAAATGGCTGAAAATCgtccaaaataaaaacaat
ttaagagCAATGCCGAGCCTAGATCTAAATAAAGTACCTCTTCTCTAACC
AATCGCTGTATTTCTTCTCAGGAACTGGATCCGGTATGGGAACTCTTCTT
ATTTCCAAAATCCGTGAAGAATATCCCGACAGAATCATGAACACATTCAG
TGTTGTTCCTTCCCCAAAAGTCTCCGATACTGTCGTCGAACCTTACAACG
CCACACTCTCTGTTCATCAATTGGTCGAAAATACAGACGAAACTTTCTGC
ATTGACAATGAAGCTCTGTACGATATTTGTTTCCGAACCTTGAAATTGAC
CACGCCCACTTATGGCGATTTGAATCATTTGGTGTCCGCAACTATGAGTG
GTGTTACAACTTGCCTTCGATTCCCCGGACAGGTAAAGTTACTTTTTTAC
GAAAAGCTATTCGAAATTTGATGTCCAAGTAAAGTGGTTTGAGTATTCAG
CGTGCCCTTACGTAGCATTTTTCCAATGAACAACAATAACTTTAACAGTT
TAAAAAATTACCTCGACAAGAACCTATTAACTCCTGAGAAACTATTTTAA
CTTTTATTATGCAAACTGGTATTTTTCGCCACAAACAGTCACGTGATGCA
CTTTTCAACCAATGAAACCTAAATAATTTTTAGTGAGTTAATCCGATAGt
gttattttaactaaatttatAATTCAGTGGtaaagaatatttaaaacatt
tctttAGTTGAACGCAGATCTTCGTAAACTTGCTGTCAACATGGTTCCCT
TCCCCCGTCTCCATTTCTTCATGCCCGGATTCGCTCCTCTCACATCACGT
GGTTCACAACAATACCGTGCTTTGACCGTCCCTGAACTCACTCAACAAAT
GTTCGACGCCAAAAACATGATGGCTGCATGTGATCCCAGGTAGGAAAGAC
TGTTTACCcttgaaagaaaatgtttggaaacgcccccccccccttaaaga
CACTATCATTACTAAAAAAATTTGTCTTATCACAGGCAGTGTCATTCTta
tataggaaattttaaaatcactAACTAGGTACACAagttcaaatttaaaa
taaagtttgaaCTAAATCTTATTCATTTTTCGCTTTCAGACATGNCTtat
ataggaaattttaaaatctttaactAGGTACACAAGGATAGTACGCAAAT
CGATTGAATTAGTCAACTTATGTACAGGTTCACTtgtttgaaaaacttaa
aatagtTTAAactaaatctttcatttttcgCTTTCAGACATGGGCGTTAC
TTAACTGTAGCTGCAATGTTCCGTGGTCGAATGTCAATGAAAGAAGTGGA
CGAACAGATGTTGAATGTCCAAAACAAGAACAGTTCATACTTTGTCGAAT
GGATCCCCAATAACGTCAAAACAGCCGTTTGTGACATCCCACCACGTGGC
TTAAAGATGGCAGCCACGTTCATTGGTAACAGTACCGCTATTCAAGAATT
ATTCAAGAGAATTAGTGAACAGTTCACAGCTATGTTCAGAAGAAAAGCTT
TCTTGCATTGGTATACAGGAGAAGGTGAGATTTGTTTCGTGTCATAGATC
AAATGTCATACATCGCTGTCTTTGGCGCCTTTCCACGTCCTCGAATAATG
CCAACATTTCCTCAACATAGACTCAAAGCTACCTTATAATAAGCAGGCTA
AATTGTATAGATAGAAGTTTAAAGTCTGTCTGTATCAGCACCAATTAAGC
TCTCTAAATTTTATACACCGCAACACAAATAAATCCTAAATTCATCTTTC
TCTTGTAGGTATGGACGAAATGGAATTCACAGAAGCAGAATCGAACATGA
ATGATTTGGTGTCTGAATATCAACAATATCAAGATGCCACCGCAGATGAT
GAGGGAGAATTtgaagaagaggaagaagaagatGCTGAGTAAGCAATTTT
CAAACAATCCCAAAAATGCCACCGCAATTGAAGTGTCATTCGTATAtaag
ttttctttcatttttatattcctttattactttttagtTAGAAATTTTGT
AGATATGCTATAGAAAGTATCAATGACGGTAGTGCAGCCGTGtatttatt
ttatcatttatcgtaaaagaaatattcaaaatgaaagttgCCAGTATTTC
C

Coding sequence (CDS) from alignment at sc0000127:371827..375277+

>TCONS_00011356 ID=TCONS_00011356|Name=TCONS_00011356|organism=Clytia hemisphaerica|type=CDS|length=9366bp|location=Sequence derived from alignment at sc0000127:371827..375277+ (Clytia hemisphaerica)
ATGAGAGAAATCGTTCACTTACAAGCTGGCCAATGTGGAAACCAAATTGG
AGCAAAGttttggGAAGTGATCTCGGACGAGCACGGTATTGACCCAACTG
GAACTTATCATGGCGATTCAGATTTGCAATTGGAAAGAATAAATGTTTAT
TATAATGAAGCTACTGGTGGGAAATATGTTCCAAGGGCGGTTCTCGTCGA
CTTGGAACCTGGTACTATGGATTCAGTGCGTTCCGGACCTTTCGGCCAAA
TCTTTCGACCGGACAATTTTGTTTTCGGACAGTCAGGAGCTGGCAACAAC
TGGGCCAAAGGACATTACACTGAAGGAGCTGAACTTGTCGATTCAGTGTT
GGATGTAGTACGCAAAGAAGCTGAAAGTTGTGATTGCTTACAAGGATTTC
AGTTAACACATTCCCTTGGTGGAGGAACTGGATCCGGTATGGGAACTCTT
CTTATTTCCAAAATCCGTGAAGAATATCCCGACAGAATCATGAACACATT
CAGTGTTGTTCCTTCCCCAAAAGTCTCCGATACTGTCGTCGAACCTTACA
ACGCCACACTCTCTGTTCATCAATTGGTCGAAAATACAGACGAAACTTTC
TGCATTGACAATGAAGCTCTGTACGATATTTGTTTCCGAACCTTGAAATT
GACCACGCCCACTTATGGCGATTTGAATCATTTGGTGTCCGCAACTATGA
GTGGTGTTACAACTTGCCTTCGATTCCCCGGACAGTTGAACGCAGATCTT
CGTAAACTTGCTGTCAACATGGTTCCCTTCCCCCGTCTCCATTTCTTCAT
GCCCGGATTCGCTCCTCTCACATCACGTGGTTCACAACAATACCGTGCTT
TGACCGTCCCTGAACTCACTCAACAAATGTTCGACGCCAAAAACATGATG
GCTGCATGTGATCCCAGACATGGGCGTTACTTAACTGTAGCTGCAATGTT
CCGTGGTCGAATGTCAATGAAAGAAGTGGACGAACAGATGTTGAATGTCC
AAAACAAGAACAGTTCATACTTTGTCGAATGGATCCCCAATAACGTCAAA
ACAGCCGTTTGTGACATCCCACCACGTGGCTTAAAGATGGCAGCCACGTT
CATTGGTAACAGTACCGCTATTCAAGAATTATTCAAGAGAATTAGTGAAC
AGTTCACAGCTATGTTCAGAAGAAAAGCTTTCTTGCATTGGTATACAGGA
GAAGGTATGGACGAAATGGAATTCACAGAAGCAGAATCGAACATGAATGA
TTTGGTGTCTGAATATCAACAATATCAAGATGCCACCGCAGATGATGAGG
GAGAATTtgaagaagaggaagaagaagatGCTGAGTAAATGAGAGAAATC
GTTCACTTACAAGCTGGCCAATGTGGAAACCAAATTGGAGCAAAGttttg
gGAAGTGATCTCGGACGAGCACGGTATTGACCCAACTGGAACTTATCATG
GCGATTCAGATTTGCAATTGGAAAGAATAAATGTTTATTATAATGAAGCT
ACTGGTGGGAAATATGTTCCAAGGGCGGTTCTCGTCGACTTGGAACCTGG
TACTATGGATTCAGTGCGTTCCGGACCTTTCGGCCAAATCTTTCGACCGG
ACAATTTTGTTTTCGGACAGTCAGGAGCTGGCAACAACTGGGCCAAAGGA
CATTACACTGAAGGAGCTGAACTTGTCGATTCAGTGTTGGATGTAGTACG
CAAAGAAGCTGAAAGTTGTGATTGCTTACAAGGATTTCAGTTAACACATT
CCCTTGGTGGAGGAACTGGATCCGGTATGGGAACTCTTCTTATTTCCAAA
ATCCGTGAAGAATATCCCGACAGAATCATGAACACATTCAGTGTTGTTCC
TTCCCCAAAAGTCTCCGATACTGTCGTCGAACCTTACAACGCCACACTCT
CTGTTCATCAATTGGTCGAAAATACAGACGAAACTTTCTGCATTGACAAT
GAAGCTCTGTACGATATTTGTTTCCGAACCTTGAAATTGACCACGCCCAC
TTATGGCGATTTGAATCATTTGGTGTCCGCAACTATGAGTGGTGTTACAA
CTTGCCTTCGATTCCCCGGACAGTTGAACGCAGATCTTCGTAAACTTGCT
GTCAACATGGTTCCCTTCCCCCGTCTCCATTTCTTCATGCCCGGATTCGC
TCCTCTCACATCACGTGGTTCACAACAATACCGTGCTTTGACCGTCCCTG
AACTCACTCAACAAATGTTCGACGCCAAAAACATGATGGCTGCATGTGAT
CCCAGACATGGGCGTTACTTAACTGTAGCTGCAATGTTCCGTGGTCGAAT
GTCAATGAAAGAAGTGGACGAACAGATGTTGAATGTCCAAAACAAGAACA
GTTCATACTTTGTCGAATGGATCCCCAATAACGTCAAAACAGCCGTTTGT
GACATCCCACCACGTGGCTTAAAGATGGCAGCCACGTTCATTGGTAACAG
TACCGCTATTCAAGAATTATTCAAGAGAATTAGTGAACAGTTCACAGCTA
TGTTCAGAAGAAAAGCTTTCTTGCATTGGTATACAGGAGAAGGTATGGAC
GAAATGGAATTCACAGAAGCAGAATCGAACATGAATGATTTGGTGTCTGA
ATATCAACAATATCAAGATGCCACCGCAGATGATGAGGGAGAATTtgaag
aagaggaagaagaagatGCTGAGTAAATGAGAGAAATCGTTCACTTACAA
GCTGGCCAATGTGGAAACCAAATTGGAGCAAAGttttggGAAGTGATCTC
GGACGAGCACGGTATTGACCCAACTGGAACTTATCATGGCGATTCAGATT
TGCAATTGGAAAGAATAAATGTTTATTATAATGAAGCTACTGGTGGGAAA
TATGTTCCAAGGGCGGTTCTCGTCGACTTGGAACCTGGTACTATGGATTC
AGTGCGTTCCGGACCTTTCGGCCAAATCTTTCGACCGGACAATTTTGTTT
TCGGACAGTCAGGAGCTGGCAACAACTGGGCCAAAGGACATTACACTGAA
GGAGCTGAACTTGTCGATTCAGTGTTGGATGTAGTACGCAAAGAAGCTGA
AAGTTGTGATTGCTTACAAGGATTTCAGTTAACACATTCCCTTGGTGGAG
GAACTGGATCCGGTATGGGAACTCTTCTTATTTCCAAAATCCGTGAAGAA
TATCCCGACAGAATCATGAACACATTCAGTGTTGTTCCTTCCCCAAAAGT
CTCCGATACTGTCGTCGAACCTTACAACGCCACACTCTCTGTTCATCAAT
TGGTCGAAAATACAGACGAAACTTTCTGCATTGACAATGAAGCTCTGTAC
GATATTTGTTTCCGAACCTTGAAATTGACCACGCCCACTTATGGCGATTT
GAATCATTTGGTGTCCGCAACTATGAGTGGTGTTACAACTTGCCTTCGAT
TCCCCGGACAGTTGAACGCAGATCTTCGTAAACTTGCTGTCAACATGGTT
CCCTTCCCCCGTCTCCATTTCTTCATGCCCGGATTCGCTCCTCTCACATC
ACGTGGTTCACAACAATACCGTGCTTTGACCGTCCCTGAACTCACTCAAC
AAATGTTCGACGCCAAAAACATGATGGCTGCATGTGATCCCAGACATGGG
CGTTACTTAACTGTAGCTGCAATGTTCCGTGGTCGAATGTCAATGAAAGA
AGTGGACGAACAGATGTTGAATGTCCAAAACAAGAACAGTTCATACTTTG
TCGAATGGATCCCCAATAACGTCAAAACAGCCGTTTGTGACATCCCACCA
CGTGGCTTAAAGATGGCAGCCACGTTCATTGGTAACAGTACCGCTATTCA
AGAATTATTCAAGAGAATTAGTGAACAGTTCACAGCTATGTTCAGAAGAA
AAGCTTTCTTGCATTGGTATACAGGAGAAGGTATGGACGAAATGGAATTC
ACAGAAGCAGAATCGAACATGAATGATTTGGTGTCTGAATATCAACAATA
TCAAGATGCCACCGCAGATGATGAGGGAGAATTtgaagaagaggaagaag
aagatGCTGAGTAAATGAGAGAAATCGTTCACTTACAAGCTGGCCAATGT
GGAAACCAAATTGGAGCAAAGttttggGAAGTGATCTCGGACGAGCACGG
TATTGACCCAACTGGAACTTATCATGGCGATTCAGATTTGCAATTGGAAA
GAATAAATGTTTATTATAATGAAGCTACTGGTGGGAAATATGTTCCAAGG
GCGGTTCTCGTCGACTTGGAACCTGGTACTATGGATTCAGTGCGTTCCGG
ACCTTTCGGCCAAATCTTTCGACCGGACAATTTTGTTTTCGGACAGTCAG
GAGCTGGCAACAACTGGGCCAAAGGACATTACACTGAAGGAGCTGAACTT
GTCGATTCAGTGTTGGATGTAGTACGCAAAGAAGCTGAAAGTTGTGATTG
CTTACAAGGATTTCAGTTAACACATTCCCTTGGTGGAGGAACTGGATCCG
GTATGGGAACTCTTCTTATTTCCAAAATCCGTGAAGAATATCCCGACAGA
ATCATGAACACATTCAGTGTTGTTCCTTCCCCAAAAGTCTCCGATACTGT
CGTCGAACCTTACAACGCCACACTCTCTGTTCATCAATTGGTCGAAAATA
CAGACGAAACTTTCTGCATTGACAATGAAGCTCTGTACGATATTTGTTTC
CGAACCTTGAAATTGACCACGCCCACTTATGGCGATTTGAATCATTTGGT
GTCCGCAACTATGAGTGGTGTTACAACTTGCCTTCGATTCCCCGGACAGT
TGAACGCAGATCTTCGTAAACTTGCTGTCAACATGGTTCCCTTCCCCCGT
CTCCATTTCTTCATGCCCGGATTCGCTCCTCTCACATCACGTGGTTCACA
ACAATACCGTGCTTTGACCGTCCCTGAACTCACTCAACAAATGTTCGACG
CCAAAAACATGATGGCTGCATGTGATCCCAGACATGGGCGTTACTTAACT
GTAGCTGCAATGTTCCGTGGTCGAATGTCAATGAAAGAAGTGGACGAACA
GATGTTGAATGTCCAAAACAAGAACAGTTCATACTTTGTCGAATGGATCC
CCAATAACGTCAAAACAGCCGTTTGTGACATCCCACCACGTGGCTTAAAG
ATGGCAGCCACGTTCATTGGTAACAGTACCGCTATTCAAGAATTATTCAA
GAGAATTAGTGAACAGTTCACAGCTATGTTCAGAAGAAAAGCTTTCTTGC
ATTGGTATACAGGAGAAGGTATGGACGAAATGGAATTCACAGAAGCAGAA
TCGAACATGAATGATTTGGTGTCTGAATATCAACAATATCAAGATGCCAC
CGCAGATGATGAGGGAGAATTtgaagaagaggaagaagaagatGCTGAGT
AAATGAGAGAAATCGTTCACTTACAAGCTGGCCAATGTGGAAACCAAATT
GGAGCAAAGttttggGAAGTGATCTCGGACGAGCACGGTATTGACCCAAC
TGGAACTTATCATGGCGATTCAGATTTGCAATTGGAAAGAATAAATGTTT
ATTATAATGAAGCTACTGGTGGGAAATATGTTCCAAGGGCGGTTCTCGTC
GACTTGGAACCTGGTACTATGGATTCAGTGCGTTCCGGACCTTTCGGCCA
AATCTTTCGACCGGACAATTTTGTTTTCGGACAGTCAGGAGCTGGCAACA
ACTGGGCCAAAGGACATTACACTGAAGGAGCTGAACTTGTCGATTCAGTG
TTGGATGTAGTACGCAAAGAAGCTGAAAGTTGTGATTGCTTACAAGGATT
TCAGTTAACACATTCCCTTGGTGGAGGAACTGGATCCGGTATGGGAACTC
TTCTTATTTCCAAAATCCGTGAAGAATATCCCGACAGAATCATGAACACA
TTCAGTGTTGTTCCTTCCCCAAAAGTCTCCGATACTGTCGTCGAACCTTA
CAACGCCACACTCTCTGTTCATCAATTGGTCGAAAATACAGACGAAACTT
TCTGCATTGACAATGAAGCTCTGTACGATATTTGTTTCCGAACCTTGAAA
TTGACCACGCCCACTTATGGCGATTTGAATCATTTGGTGTCCGCAACTAT
GAGTGGTGTTACAACTTGCCTTCGATTCCCCGGACAGTTGAACGCAGATC
TTCGTAAACTTGCTGTCAACATGGTTCCCTTCCCCCGTCTCCATTTCTTC
ATGCCCGGATTCGCTCCTCTCACATCACGTGGTTCACAACAATACCGTGC
TTTGACCGTCCCTGAACTCACTCAACAAATGTTCGACGCCAAAAACATGA
TGGCTGCATGTGATCCCAGACATGGGCGTTACTTAACTGTAGCTGCAATG
TTCCGTGGTCGAATGTCAATGAAAGAAGTGGACGAACAGATGTTGAATGT
CCAAAACAAGAACAGTTCATACTTTGTCGAATGGATCCCCAATAACGTCA
AAACAGCCGTTTGTGACATCCCACCACGTGGCTTAAAGATGGCAGCCACG
TTCATTGGTAACAGTACCGCTATTCAAGAATTATTCAAGAGAATTAGTGA
ACAGTTCACAGCTATGTTCAGAAGAAAAGCTTTCTTGCATTGGTATACAG
GAGAAGGTATGGACGAAATGGAATTCACAGAAGCAGAATCGAACATGAAT
GATTTGGTGTCTGAATATCAACAATATCAAGATGCCACCGCAGATGATGA
GGGAGAATTtgaagaagaggaagaagaagatGCTGAGTAAATGAGAGAAA
TCGTTCACTTACAAGCTGGCCAATGTGGAAACCAAATTGGAGCAAAGttt
tggGAAGTGATCTCGGACGAGCACGGTATTGACCCAACTGGAACTTATCA
TGGCGATTCAGATTTGCAATTGGAAAGAATAAATGTTTATTATAATGAAG
CTACTGGTGGGAAATATGTTCCAAGGGCGGTTCTCGTCGACTTGGAACCT
GGTACTATGGATTCAGTGCGTTCCGGACCTTTCGGCCAAATCTTTCGACC
GGACAATTTTGTTTTCGGACAGTCAGGAGCTGGCAACAACTGGGCCAAAG
GACATTACACTGAAGGAGCTGAACTTGTCGATTCAGTGTTGGATGTAGTA
CGCAAAGAAGCTGAAAGTTGTGATTGCTTACAAGGATTTCAGTTAACACA
TTCCCTTGGTGGAGGAACTGGATCCGGTATGGGAACTCTTCTTATTTCCA
AAATCCGTGAAGAATATCCCGACAGAATCATGAACACATTCAGTGTTGTT
CCTTCCCCAAAAGTCTCCGATACTGTCGTCGAACCTTACAACGCCACACT
CTCTGTTCATCAATTGGTCGAAAATACAGACGAAACTTTCTGCATTGACA
ATGAAGCTCTGTACGATATTTGTTTCCGAACCTTGAAATTGACCACGCCC
ACTTATGGCGATTTGAATCATTTGGTGTCCGCAACTATGAGTGGTGTTAC
AACTTGCCTTCGATTCCCCGGACAGTTGAACGCAGATCTTCGTAAACTTG
CTGTCAACATGGTTCCCTTCCCCCGTCTCCATTTCTTCATGCCCGGATTC
GCTCCTCTCACATCACGTGGTTCACAACAATACCGTGCTTTGACCGTCCC
TGAACTCACTCAACAAATGTTCGACGCCAAAAACATGATGGCTGCATGTG
ATCCCAGACATGGGCGTTACTTAACTGTAGCTGCAATGTTCCGTGGTCGA
ATGTCAATGAAAGAAGTGGACGAACAGATGTTGAATGTCCAAAACAAGAA
CAGTTCATACTTTGTCGAATGGATCCCCAATAACGTCAAAACAGCCGTTT
GTGACATCCCACCACGTGGCTTAAAGATGGCAGCCACGTTCATTGGTAAC
AGTACCGCTATTCAAGAATTATTCAAGAGAATTAGTGAACAGTTCACAGC
TATGTTCAGAAGAAAAGCTTTCTTGCATTGGTATACAGGAGAAGGTATGG
ACGAAATGGAATTCACAGAAGCAGAATCGAACATGAATGATTTGGTGTCT
GAATATCAACAATATCAAGATGCCACCGCAGATGATGAGGGAGAATTtga
agaagaggaagaagaagatGCTGAGTAAATGAGAGAAATCGTTCACTTAC
AAGCTGGCCAATGTGGAAACCAAATTGGAGCAAAGttttggGAAGTGATC
TCGGACGAGCACGGTATTGACCCAACTGGAACTTATCATGGCGATTCAGA
TTTGCAATTGGAAAGAATAAATGTTTATTATAATGAAGCTACTGGTGGGA
AATATGTTCCAAGGGCGGTTCTCGTCGACTTGGAACCTGGTACTATGGAT
TCAGTGCGTTCCGGACCTTTCGGCCAAATCTTTCGACCGGACAATTTTGT
TTTCGGACAGTCAGGAGCTGGCAACAACTGGGCCAAAGGACATTACACTG
AAGGAGCTGAACTTGTCGATTCAGTGTTGGATGTAGTACGCAAAGAAGCT
GAAAGTTGTGATTGCTTACAAGGATTTCAGTTAACACATTCCCTTGGTGG
AGGAACTGGATCCGGTATGGGAACTCTTCTTATTTCCAAAATCCGTGAAG
AATATCCCGACAGAATCATGAACACATTCAGTGTTGTTCCTTCCCCAAAA
GTCTCCGATACTGTCGTCGAACCTTACAACGCCACACTCTCTGTTCATCA
ATTGGTCGAAAATACAGACGAAACTTTCTGCATTGACAATGAAGCTCTGT
ACGATATTTGTTTCCGAACCTTGAAATTGACCACGCCCACTTATGGCGAT
TTGAATCATTTGGTGTCCGCAACTATGAGTGGTGTTACAACTTGCCTTCG
ATTCCCCGGACAGTTGAACGCAGATCTTCGTAAACTTGCTGTCAACATGG
TTCCCTTCCCCCGTCTCCATTTCTTCATGCCCGGATTCGCTCCTCTCACA
TCACGTGGTTCACAACAATACCGTGCTTTGACCGTCCCTGAACTCACTCA
ACAAATGTTCGACGCCAAAAACATGATGGCTGCATGTGATCCCAGACATG
GGCGTTACTTAACTGTAGCTGCAATGTTCCGTGGTCGAATGTCAATGAAA
GAAGTGGACGAACAGATGTTGAATGTCCAAAACAAGAACAGTTCATACTT
TGTCGAATGGATCCCCAATAACGTCAAAACAGCCGTTTGTGACATCCCAC
CACGTGGCTTAAAGATGGCAGCCACGTTCATTGGTAACAGTACCGCTATT
CAAGAATTATTCAAGAGAATTAGTGAACAGTTCACAGCTATGTTCAGAAG
AAAAGCTTTCTTGCATTGGTATACAGGAGAAGGTATGGACGAAATGGAAT
TCACAGAAGCAGAATCGAACATGAATGATTTGGTGTCTGAATATCAACAA
TATCAAGATGCCACCGCAGATGATGAGGGAGAATTtgaagaagaggaaga
agaagatGCTGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006366XLOC_006366Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011356-proteinTCONS_00011356-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011356-exon-sc0000127-1491911889:371827..372071TCONS_00011356-exon-sc0000127-1491911889:371827..372071Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1510915933:371827..372071TCONS_00011356-exon-sc0000127-1510915933:371827..372071Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1575043694:371827..372071TCONS_00011356-exon-sc0000127-1575043694:371827..372071Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1491911889:372332..372440TCONS_00011356-exon-sc0000127-1491911889:372332..372440Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1510915933:372332..372440TCONS_00011356-exon-sc0000127-1510915933:372332..372440Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1575043694:372332..372440TCONS_00011356-exon-sc0000127-1575043694:372332..372440Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1491911889:372723..372980TCONS_00011356-exon-sc0000127-1491911889:372723..372980Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1510915933:372723..372980TCONS_00011356-exon-sc0000127-1510915933:372723..372980Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1575043694:372723..372980TCONS_00011356-exon-sc0000127-1575043694:372723..372980Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1491911889:373248..373558TCONS_00011356-exon-sc0000127-1491911889:373248..373558Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1510915933:373248..373558TCONS_00011356-exon-sc0000127-1510915933:373248..373558Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1575043694:373248..373558TCONS_00011356-exon-sc0000127-1575043694:373248..373558Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1491911889:373884..374065TCONS_00011356-exon-sc0000127-1491911889:373884..374065Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1510915933:373884..374065TCONS_00011356-exon-sc0000127-1510915933:373884..374065Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1575043694:373884..374065TCONS_00011356-exon-sc0000127-1575043694:373884..374065Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1491911889:374414..374700TCONS_00011356-exon-sc0000127-1491911889:374414..374700Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1510915933:374414..374700TCONS_00011356-exon-sc0000127-1510915933:374414..374700Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1575043694:374414..374700TCONS_00011356-exon-sc0000127-1575043694:374414..374700Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1491911889:374935..375277TCONS_00011356-exon-sc0000127-1491911889:374935..375277Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1510915933:374935..375277TCONS_00011356-exon-sc0000127-1510915933:374935..375277Clytia hemisphaericaexon
TCONS_00011356-exon-sc0000127-1575043694:374935..375277TCONS_00011356-exon-sc0000127-1575043694:374935..375277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:371827..375277 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2707.68	2674.21	784.705	658.053	264.645	209.002	49.8566	57.8403	18.0436	30.1882	17.0768	15.9481	9.83388	9.36153	18.0068	20.6133	108.539	137.205	21.1305	19.034	205.294	198.769	1660.31	1324.24	16.5743	14.5248	75.3614	101.317	996.489	1201.03
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002453Beta_tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR017975Tubulin_CS
IPR013838Beta-tubulin_BS
IPR008280Tub_FtsZ_C
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
Blast
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BLAST of TCONS_00011356 vs. Swiss-Prot (Human)
Match: TBB4B (Tubulin beta-4B chain OS=Homo sapiens GN=TUBB4B PE=1 SV=1)

HSP 1 Score: 849.736 bits (2194), Expect = 0.000e+0
Identity = 423/426 (99.30%), Postives = 426/426 (100.00%), Query Frame = 3 
Query:  189 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 1466
            MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM+ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
The following BLAST results are available for this feature:
BLAST of TCONS_00011356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBB4B0.000e+099.30Tubulin beta-4B chain OS=Homo sapiens GN=TUBB4B PE... [more]
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