TCONS_00011355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011355
Unique NameTCONS_00011355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length606

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011355 ID=TCONS_00011355|Name=TCONS_00011355|organism=Clytia hemisphaerica|type=transcript|length=606bp
ACAATATTACTgattttacaAACTGCGCATGCGTCACACCTTTCAACGTG
TCcacaaaaacaaatgaaaatgcttaTCAAATGGTTCAAAGTGTAACTGA
AGGAAAATGCGATCAAAATTGTGATAATATTTACATCTTTTTAATCTTCA
TCATATTaacgattatgacgtcatttattGGGGTTACTCCCAAAAACATG
ATTACTTTGAGATCGGTGCCAGCCAATCAGCGTTCGTTTGCAATGGGTCT
TCAATTCTTGATGGTCCGATTGTTGGGAATGTTACCAGGACCTATAGTGG
TTGGTCAATTGTTCGATTCCACCTGCTTGATATGGAAATATGATAGTTGT
GGTGCCAAAACAAATTGTGCTGAATATAAATTGGAATCGCTTTCAAATGA
AATCAAATATGTTTCACTGGCTGGTAATTtgATCAATTTAGCATTTTTCC
TGATGGCCATTTGGGTATACAAAGATCCACATGGAGAAGAACAAGGTGTG
GAAGTAATAGATGGGAAACATACAACGTTTGACGAGATTGGACAAACTAA
TCCTCTACAAGTCACCGAAGATGAGAAAGATAATGACCAAAATAACAACC
TCGGTG
Run BLAST on NCBI

transcript from alignment at sc0000127:366436..370254+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011355 ID=TCONS_00011355|Name=TCONS_00011355|organism=Clytia hemisphaerica|type=transcript|length=3819bp|location=Sequence derived from alignment at sc0000127:366436..370254+ (Clytia hemisphaerica)
ACAATATTACTGTAAGTTACTTCAAACTCCTCGTTaagtagtaagtctgc
gaccgcagttggAGGTGACCCGaaagctcctctttcgatagctatctacc
cgaaagtaggggagggcgccactctttctccctggattgcacCACTTACC
ATTGATCCTTATCTTAAtagctgagcatcaagcagagaggtctcaagtac
cattttgggaatctttggtttgacccggctggggattgaacccgcaatct
tgcgaaccgtagcccggatgctctaccactgctcTACGGTCGCTTCTCGT
TACTggaacctccataactcgaattttaTTATACAACACTACCACGTCTT
GTTGTCTCTTTTCTTTCAAACTCTTATTACCAACTTTGACTCAAGCTCTC
CATAACATAACGTTTGTCATGAAGAAAATGGCGTCAAATTAACGTCAAAG
TCATTGATTTTCTTAAAGACACAGAATTTTGACGTCTTTTTACCTGTGTA
CTATAATGTTTTGTGGGCTGATAGGTGAAAAATGATTTacttttttagga
ttttacaAACTGCGCATGCGTCACACCTTTCAACGTGTCcacaaaaacaa
atgaaaatgcttaTCAAATGGTTCAAAGTGTAACTGAAGGAAAATGCGAT
CAAAATTGTGATAATATTTACATCTTTTTAATCTTCATCATATTaacgat
tatgacgtcatttattGGGGTTACTCCCAAAAACATGATTACTTTGAGGT
AAGCATCCATTTTGGGAAAagtttgcattttttgaaaaagattttgagag
tccagaaaaaatatttctagcaTAATTATTTAATAACTCTTTAGATTTTA
AAGATCAATGGTGAAAGTTATTCATCAGATACGTTAAAGCAGGGTATGGC
TGGCCGCATGTAGCaaaattcaatacttttttatttttattcaatatcca
tatttatattcaattttctatattcATGTTCAATTATTTCATNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATG
TTCAATTATTTCATATTTCCATTCAATaattattgccaataaaaaaaata
ttgccaataaaaaaatattgccaataaaaaaaatattgtcaataaAAAAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTACACCGG
TCACGTGATATAATTCGTGATTCTTTCGCACGAAAAATAAACATGTGAGT
TTCTTGCAAAGCAAAACTTGAGAAAAGGACTGAAGGAGGTTGGCGGGTTG
GCTGTCGGGCTGTTGGTAAACTTGCTTGATAACCTTcctcaaaagtacac
ccttacaatgCACTTCTAGAACCTCATAAAACCTACCCTAGGCAGCACAT
GCCGTAGGTCGGACCATAATGATGAAGTGCCCCAGGGTTATAAGGTAGTG
AAATCAACCTCAATGTGTGCACCaaatgacgacggattgaatctggCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCGAATTCCTTAAGTGATCACGTGATATATCTATTGTGGAGACCT
TCATTCAACCTTTACTGAAAACTTATTGAATGAGAAAATTTATTGGCAAT
AATTTTTACTGccaatactttttttattggcaatacttttttattggcaa
tactttttttattggcaatatctttttttattggcaatattttttttatt
ggcaAATATTTTTTTATTGACAATAATTATTGAATGAAAATATGAAATAA
TTGAATATGAATATTGAAAATTGAAtataaatatagaaaattgaacatga
atatagaaaattgaatataaatatggatattgaataaaaataaaaaagta
ttgaattttGCTACATGCGGCCAGCCATAGCAGGGTAAAATGTAATTGAA
AATAAACTTCCCACAAATGTTATCAACATTGGTATTTTGAACTGAAAACA
GTGGATTCTATCTATATCACCGTTAAAATCTTGATGAAAATCGGTCTCTA
CTAAAAGCTCCTCCGGGGcgctgagacagggatgtaatttCAAATGATTT
CAGACTGGAGCGTTCAAAATAGTCGtcgttttatttttacataagcgTTC
CCGTTTGATATCAgatacatatttcatatcaggacagtgtctccctattg
ttttattgtgctgatgtaaacaaaaaattatttttcttttcttctatctg
atgaccaatcttgctccacatctgtgttaATTCAATgttaaaagcttgta
aattaaaattgatgattaagcaaacgatatcactcttatttaaaaacaaa
acctttaatatcaAATATAATACTCATTTTATCCGTTAGATCGGTGCCAG
CCAATCAGCGTTCGTTTGCAATGGGTCTTCAATTCTTGATGGTCCGATTG
TTGGGAATGTTACCAGGACCTATAGTGGTTGGTCAATTGTTCGATTCCAC
CTGCTTGATATGGAAATATGATAGTTGTGGTGCCAAAACAAATTGTGCTG
AATATAAATTGGAATCGCTTTCAAATGAAATCAAATATGTTTCACTGGCT
GGTAATTGTAAGTCAATTGAGTTTTCAGGTCTTTCCATAAAGAGGCAGTC
TTTATTAGAAGGGGTTAAAATGATACGATTTCTAGATGTAATATCTAATA
TGAGAGGTAATGTCTTggtaaaattattaaaatttagtCGCCCCTAAACT
AAGGGATTTGCTTTCTTGAAGACCATGGGAagtttctttactttttgaag
TAGATAAGTAATTCCTAAAGTCTCGTTCACACTTCAAATAAATAAATGCT
CAATTATTCTAAACTAATAAACAAACAAGCACATAATTTTGCATTAAACT
GTACCTAGCAATAAAACAACTTTGCTAAAGCCATCGTCGTGAAAAATGCA
TCAGAAGGATGACAggtcccccgggggggggggtacttaatTCAAAAACG
ACCCTGCGTGCGGCCCAAAATTGGGaatttgaaatcggacccttataGCA
CCGAGAAAATTTAGTCAAATTTAggcgaaaattgacccttacggtgcatt
ttcttattCCAGGTAACAGaaattttttgtttatatttttagtgATCAAT
TTAGCATTTTTCCTGATGGCCATTTGGGTATACAAAGATCCACATGGAGA
AGAACAAGGTGTGGAAGTAATAGATGGGAAACATACAACGTTTGACGAGA
TTGGACAAACTAATCCTCTACAAGTCACCGAAGATGAGAAAGATAATGAC
CAAAATAACAACCTCGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006365XLOC_006365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011355-exon-sc0000127-1491911889:366436..366446TCONS_00011355-exon-sc0000127-1491911889:366436..366446Clytia hemisphaericaexon
TCONS_00011355-exon-sc0000127-1510915933:366436..366446TCONS_00011355-exon-sc0000127-1510915933:366436..366446Clytia hemisphaericaexon
TCONS_00011355-exon-sc0000127-1575043694:366436..366446TCONS_00011355-exon-sc0000127-1575043694:366436..366446Clytia hemisphaericaexon
TCONS_00011355-exon-sc0000127-1491911889:366984..367183TCONS_00011355-exon-sc0000127-1491911889:366984..367183Clytia hemisphaericaexon
TCONS_00011355-exon-sc0000127-1510915933:366984..367183TCONS_00011355-exon-sc0000127-1510915933:366984..367183Clytia hemisphaericaexon
TCONS_00011355-exon-sc0000127-1575043694:366984..367183TCONS_00011355-exon-sc0000127-1575043694:366984..367183Clytia hemisphaericaexon
TCONS_00011355-exon-sc0000127-1491911889:369325..369542TCONS_00011355-exon-sc0000127-1491911889:369325..369542Clytia hemisphaericaexon
TCONS_00011355-exon-sc0000127-1510915933:369325..369542TCONS_00011355-exon-sc0000127-1510915933:369325..369542Clytia hemisphaericaexon
TCONS_00011355-exon-sc0000127-1575043694:369325..369542TCONS_00011355-exon-sc0000127-1575043694:369325..369542Clytia hemisphaericaexon
TCONS_00011355-exon-sc0000127-1491911889:370078..370254TCONS_00011355-exon-sc0000127-1491911889:370078..370254Clytia hemisphaericaexon
TCONS_00011355-exon-sc0000127-1510915933:370078..370254TCONS_00011355-exon-sc0000127-1510915933:370078..370254Clytia hemisphaericaexon
TCONS_00011355-exon-sc0000127-1575043694:370078..370254TCONS_00011355-exon-sc0000127-1575043694:370078..370254Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:366436..370254 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.310965	0	0.0666764	0	0.123226	0	0.374643	0.209597	2.31568	2.29335	1.73142	3.0527	0.443823	0.508618	2.79974	2.69597	3.17695	0.936618	1.83451	0.562077	1.28915e-09	0.261813	0.252716	0.765362	0.889492	0.38206
Blast
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BLAST of TCONS_00011355 vs. Swiss-Prot (Human)
Match: SO4C1 (Solute carrier organic anion transporter family member 4C1 OS=Homo sapiens GN=SLCO4C1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.211e-20
Identity = 53/155 (34.19%), Postives = 85/155 (54.84%), Query Frame = 3 
Query:   15 FTNCACVTPFNVSTKTNENAYQMVQSVTEGKCDQNCDNXXXXXXXXXXXXXXXXXGVTPKNMITLRSVPANQRSFAMGLQFLMVRLLGMLPGPIVVGQLFDSTCLIWKYDSCGAKTNCAEYKLESLSNEIKYVSLAGNLINLAFFLMAIWVYKDP 479
            + NC+C+      T+    A         GKC+ +C  + IFL    + I+ +F+  TP  +  LR V   QRS A+G+QF+++RLLG +PGPI+ G   DSTC++W  + CG K  C  Y    +++ +  +S+   +I + F   AI++YK P
Sbjct:  542 YYNCSCI---ERKTEITSTAETFGFEAKAGKCETHCAKLPIFLCIFFIVIIFTFMAGTPITVSILRCVNHRQRSLALGIQFMVLRLLGTIPGPIIFGFTIDSTCILWDINDCGIKGACWIYDNIKMAHMLVAISVTCKVITMFFNGFAIFLYKPP 693
The following BLAST results are available for this feature:
BLAST of TCONS_00011355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SO4C12.211e-2034.19Solute carrier organic anion transporter family me... [more]
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