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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011354 ID=TCONS_00011354|Name=TCONS_00011354|organism=Clytia hemisphaerica|type=transcript|length=2498bpRun BLAST on NCBI protein sequence of TCONS_00011354-protein >TCONS_00011354-protein ID=TCONS_00011354-protein|Name=TCONS_00011354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=683bp MANLEKLKVRNEDEDERTFLCGFRDWTPKCLQFFADIHWFIPFISLCSLVRun BLAST on NCBI transcript from alignment at sc0000127:352946..370254+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011354 ID=TCONS_00011354|Name=TCONS_00011354|organism=Clytia hemisphaerica|type=transcript|length=17309bp|location=Sequence derived from alignment at sc0000127:352946..370254+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000127:352946..370254+ >TCONS_00011354 ID=TCONS_00011354|Name=TCONS_00011354|organism=Clytia hemisphaerica|type=CDS|length=18441bp|location=Sequence derived from alignment at sc0000127:352946..370254+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011354 vs. Swiss-Prot (Human)
Match: SO4A1 (Solute carrier organic anion transporter family member 4A1 OS=Homo sapiens GN=SLCO4A1 PE=1 SV=2) HSP 1 Score: 258.07 bits (658), Expect = 8.162e-74 Identity = 212/683 (31.04%), Postives = 329/683 (48.17%), Query Frame = 2
Query: 461 EKLKVRNEDEDE-----RTFLCGFRDWTPKCLQFFADIHWFIPFISLCSLVQGMLVSGFINASIPHIEREFGLTSTQSGILLASNDLTGFLFVMFVSYYGEKGHKPTWXXXXXXXXXXXXXXYSLPKFMKGDYQPLSTTATFDYNKYELCHHNSSSTIIDLPSHSCTITDDSSGL--YLTILCVANMLMGIGATPLNTLGAAYLDENVSPKNSPIYIGIWYGMIILGPSVGFSAAAGFLNEYTNMDGKIPDGIDQLSPLYVGRWWYPFATLGWILVFNGFILMLFPKKMPGALKIREKAIKKGHVQEESKELEEIRK---RGFIGFLKATXXXXXXXXXXXXXXASSAKMFIATGVSPFFSKYLTMKYGADPTKANSMXXXXXXXXXXXXXXXXXXXMRFLDXXXXXXXXXXXXXVLGVLNCFMAFSYEIKGCDPIDLVSSRQSITFDNG---TNAFCNNNCGCLKEHYNPVC-ANGITYLSPCMAGC--TTQNNITD---FTNCACVTPFNVSTKTNENAYQMVQSVTEGKCDQNCDNXXXXXXXXXXXXXXXXXGVTPKNMITLRSVPANQRSFAMGLQFLMVRLLGMLPGPIVVGQLFDSTCLIWKYDSCGAKTNCAEYKLESLSNEIKYVSLAGNLINLAFFLMAIWVYKDPHGEEQGVEVIDGKHTTFDEIGQTNPLQ 2452
EK R E ++ CG+ + P CLQ + F+ + +QGM V+GFIN I +ER + L S QSG++ +S D+ L + FVSY+G GHKP WLG G +L+G G+ +++LP F G Y+ D C N P C D +SGL Y + + L G+GATPL TLG YLDENV SP+YI I+Y ILGP+ G+ LN YT M + + SPL+VG WW F G F ++ +P+++PG+ + + H ++S E + + +LLKN +L+ LA + + + TG+S F K+L ++ ++A ++ G ++V GG +G + L ++ S + + L + FS + +S G A CN C C EHY+PVC ++G+ Y S C AGC T+ N+ + +C+C+ P N+S+ T GKC C + L+FI + I +F+ P TLR V QRSFA+G+Q+++VR+LG +PGPI G + D CL+W+ D CG + +C Y+ ++S I + L ++ + FF +A ++YK G+E ++ + + LQ
Sbjct: 65 EKHGARGTHEVRYVSAGQSVACGWWAFAPPCLQVLNTPKGILFFLCAAAFLQGMTVNGFINTVITSLERRYDLHSYQSGLIASSYDIAACLCLTFVSYFGGSGHKPRWLGWGVLLMGTGSLVFALPHFTAGRYE-----VELDAG-VRTCPAN--------PGAVC--ADSTSGLSRYQLVFMLGQFLHGVGATPLYTLGVTYLDENVKSSCSPVYIAIFYTAAILGPAAGYLIGGALLNIYTEMGRRTE--LTTESPLWVGAWWVGFLGSGAAAFFTAVPILGYPRQLPGSQRYAVMRAAEMHQLKDSSRGEASNPDFGKTIRDLPLSIWLLLKNPTFILLCLAGATEATLITGMSTFSPKFLESQFSLSASEAATLFGYLVVPAGGGGTFLGGFFVNKLRLRGSAVIKFCLFCTVVSLLGILVFSLHCPSVPMAGVTASYGGSLLPEGHLNLTAPCNAACSCQPEHYSPVCGSDGLMYFSLCHAGCPAATETNVDGQKVYRDCSCI-PQNLSSGFGH--------ATAGKCTSTCQRKPLLLVFIFVVIFFTFLSSIPALTATLRCVRDPQRSFALGIQWIVVRILGGIPGPIAFGWVIDKACLLWQ-DQCGQQGSCLVYQNSAMSRYILIMGLLYKVLGVLFFAIACFLYKPLSESSDGLETCLPSQSSAPDSATDSQLQ 719 The following BLAST results are available for this feature:
BLAST of TCONS_00011354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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