|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011346 ID=TCONS_00011346|Name=TCONS_00011346|organism=Clytia hemisphaerica|type=transcript|length=1405bpRun BLAST on NCBI protein sequence of TCONS_00011346-protein >TCONS_00011346-protein ID=TCONS_00011346-protein|Name=TCONS_00011346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp YVSTIRSLRELDPSGIILENVCSPLREYLRSRDDTIKCIITCLTDQGSGPRun BLAST on NCBI transcript from alignment at sc0000127:175482..205711+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011346 ID=TCONS_00011346|Name=TCONS_00011346|organism=Clytia hemisphaerica|type=transcript|length=30230bp|location=Sequence derived from alignment at sc0000127:175482..205711+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000127:175482..205711+ >TCONS_00011346 ID=TCONS_00011346|Name=TCONS_00011346|organism=Clytia hemisphaerica|type=CDS|length=13410bp|location=Sequence derived from alignment at sc0000127:175482..205711+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011346 vs. Swiss-Prot (Human)
Match: ANC2 (Anaphase-promoting complex subunit 2 OS=Homo sapiens GN=ANAPC2 PE=1 SV=1) HSP 1 Score: 304.679 bits (779), Expect = 8.283e-94 Identity = 177/456 (38.82%), Postives = 265/456 (58.11%), Query Frame = 2
Query: 2 YVSTIRSLRELDPSGIILENVCSPLREYLRSRDDTIKCIITCLTDQGSGP-DLSEEL-------LGFGDDFDTTKSCDVESDGEEWYPDPVDAVTSDAQTKSQRRADILNILVNIYGSQDTFVSQYRILLADRILNNYSYDVTNERRYIELLKRRFGENHMHYCDIMLKDIQDSHRINRRITTEMKKKQKGGEQADQTXXXXXXXXXXXXVSVSSKTGPETPDKIDFNAFILSSAFWPTLANESVDPPSQVESLMSDYNDLFKQSKGMRSLEWLNNLGSVEVEVELDEGVTKNFNVTPAQATLLVKFQEKDDWTLNDLATSLNINKSSLRNRIAFWIGQGVIIEKSNDHFTSAQTFQSSQLNNSIY-ESDDE--CGATSAQNQKDQELQVYWSYVVGMLTNIGSLPLDRIHAMLKMFAST-EASTQCTLDDVKSFLQAKVNNGELVYVGGVYKLPK 1333
Y+S I++LR LDPS +ILE C P+R YLR+R+DT++ I+ LT G DL+ EL L G D S D + E+W PDPVDA + +R +DI+++LV+IYGS+D F+++YR LLADR+L+ +S+ E R +ELLK RFGE MH+C++MLKD+ DS RIN I E +K+ E P A ILSS FWP +E ++ P + + + Y ++Q K MR+L W + LG V ++VEL + T + VTP QA +L+ FQ++ WTL +L+ ++ + + LR R++ W+ QGV+ E+ F+ + + +N + +SDDE G S +QK++EL ++W+Y+ MLTN+ SL LDRI+ ML+MF T A + L +++ +LQ KV + +LVY GVY+LPK
Sbjct: 400 YISAIKALRVLDPSMVILEVACEPIRRYLRTREDTVRQIVAGLTGDSDGTGDLAVELSKTDPASLETGQD-----SEDDSGEPEDWVPDPVDA-DPGKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLKLRFGEAPMHFCEVMLKDMADSRRINANIREEDEKR----------------------------PAEEQP-PFGVYAVILSSEFWPPFKDEKLEVPEDIRAALEAYCKKYEQLKAMRTLSWKHTLGLVTMDVELADR-TLSVAVTPVQAVILLYFQDQASWTLEELSKAVKMPVALLRRRMSVWLQQGVLREEPPGTFSVIEEERPQDRDNMVLIDSDDESDSGMASQADQKEEELLLFWTYIQAMLTNLESLSLDRIYNMLRMFVVTGPALAEIDLQELQGYLQKKVRDQQLVYSAGVYRLPK 819 The following BLAST results are available for this feature:
BLAST of TCONS_00011346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.