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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011344 ID=TCONS_00011344|Name=TCONS_00011344|organism=Clytia hemisphaerica|type=transcript|length=2868bp
CTTGAAGAACTGaagaattttgatttgattttttttctaactaAAGACAG
AGAGACAAAAAATGGAGTTATTCCTGAGGCGAGAAGGCATGATGAACACG
CCAAGACCAGTCCCGACCATTGCTGATGATTCAAATTTCAGCAGAAAGAA
GAAATCACTCTTGAACGACAGTCTATATGCGCCGCGTTCACCCGTCAAAT
CAGCACCGCCCATTAGTCGTATTTTCCGCCATCGACGTGGCTCAACGCCC
GGCGCCCATTCAGTTAGCTTCAGAAAATCTGAAGTGCAAGGAGATGTTAG
TATGACAAGCCCATTATACAAGACTTACGATCAATTGTATTTTGATCAAT
GTTTCACCAAATTATCAAAAGTGGGCGTTGGCTCTTTCGGAGAAGTATGG
AAAGTTCAAAGCAAGGAGGATGGAAAATTATACGCCATTAAAAAGTCACG
TGATCGTTTCCGTGGAGACTTCGATCGTAAACAACGCTTGGAGGAAGTCA
ATAAAAGTGAGCGGATCCAGGGCCACTGTAATTGCGTCTATTTCCATAAA
GCGTGGGAAGAGCTAGACTATTTGTATATTCAATACGAATTGTGCGAGAT
GAGCTTGAAAGATTACGCCGAAAAAGTGCAATCGGTCGAGGAGAAAGAAA
TCTGGAAAATGATCATCGATTTTTGTTACGGGCTTAAACATCTTCACGAT
GCTAACCTTGCCCACATGGACATTAAACCGGCTAATTTGTTTCTTGGTCG
TGATGGCAACTATAAGATTGGAGACTTTGGATTGGTTGTTGAGCTAACAC
GTGACGTTGATGCTATGGATGGTGATTCCAAATATATTGCACCTGAACTT
CTTGAAGGAACTTTCTCAAAAGCAGCTGATATCTTTAGCTTAGGTATCAC
TGTTTTGGAACTGGCGTGTAGTCTTGAATTACCGAACGGAGGACCTTTGT
GGCAACGTTTGAGACAAAAGCAATTGCCAAACAAATTCACCACTGGTTTA
TCGGATGATTTGATTCTCTTAATCTCCTCTATGATGGATCCAAATCCTTC
GAATCGACCAACAGTTGACCAAATCCTCCGAATGCCGTGCGTACGTCAAG
TCAATACACGGCGTCCACCAATCAGTACTTACGTCTCAACAATCACGCAA
CCGTTCTTTAGTCTATGGTTCTACGTCATGTGGATGCTAACATCAATTAC
GTCATTCTTCAAACGTGATTACCGTACACAGATCTCACTTCATCACATGA
GAGAAATCAAGCGACCGAGAACTCCTTCTCCTAGGACCAGTGTCTTTGGC
GAGGAAGGATGCACTCCACTTAATACTCATAGCAAAGCCCAAGAATCACT
TTCATCGCAGATCGAGACGACAGTGTTTTCCTCTCCAGCTAAGCGATCAC
AACAAAAGCTACGTGCAAACATGGTTAGCcctcttttcaacaaaaacagt
CCTTTATTCAGACCTATGTTTAACCAAAGCAAGTCACAAGAATCGTCCCC
AAGTGGTCTATTTGGCGAGTCACCTATAACCAGAGACAGTTCCAAAAGCA
GTAGTAGAAACACTAGTATGGATAGTCCCGACCTAACAGACTGCTCACCG
CAAACTGGCACGGTGAGTGAACGAATTGTCCGCTCGCGGTTGTTTACATG
TTCTAGTGACGAGGACGAAGACTTTGATTTACAAAGAGTTCCTAAAAACC
TTATGAGTAGTTTTAAAGAAGACTCTGAGTAATGTTCATTTATTTCTCTT
TTTGTCTTGTTCTTTCATTGTAAATTCATTGGGGAATAATTCAGAATAAC
TATTGCTCTTACTCATTGCGAGTCCCCCCTCCCCATTTCCCACCCTTTTT
GTAACTTCACCCCATTGAAAAACCCGTATANTCTATGGTTCTACGTCATG
TGGATGCTAACATCAATTACGTCATTCTTCAAACGTGATTACCGTACACA
GATCTCACTTCATCACATGAGAGAAATCAAGCGACCGAGAACTCCTTCTC
CTAGGACCAGTGTCTTTGGCGAGGAAGGATGCACTCCACTTAATACTCAT
AGCAAAGCCCAAGAATCACTTTCATCGCAGATCGAGACGACAGTGTTTTC
CTCTCCAGCTAAGCGATCACAACAAAAGCTACGTGCAAACATGGTTAGCc
ctcttttcaacaaaaacagtCCTTTATTCAGACCTATGTTTAACCAAAGC
AAGTCACAAGAATCGTCCCCAAGTGGTCTATTTGGCGAGTCACCTATAAC
CAGAGACAGTTCCAAAAGCAGTAGTAGAAACACTAGTATGGATAGTCCCG
ACCTAACAGACTGCTCACCGCAAACTGGCACGGTGAGTGAACGAATTGTC
CGCTCGCGGTTGTTTACATGTTCTAGTGACGAGGACGAAGACTTTGATTT
ACAAAGAGTTCCTAAAAACCTTATGAGTAGTTTTAAAGAAGACTCTGAGT
AATGTTCATTTATTTCTCTTTTTGTCTTGTTCTTTCATTGTAAATTCATT
GGGGAATAATTCAGAATAACTATTGCTCTTACTCATTGCGAGTCCCCCCT
CCCCATTTCCCACCCTTTTTGTAACTTCACCCCATTGAAAAACCCGTATA
AAATGAACCATTTTTTGTAAATCTCTCGTGTCTCTtcagggtcaaatttt
tccctttttctctTTACCCCACTGTTTCCCAATAGAATTATAGATATATA
TTAGATTAGAAACTACAAATTTTGGGTTGACATTTTTTTTAGATATAGTT
GCTTCGTTTATATGgagttgatttttctttggaaaaagttttttgtaaat
attgatgtgtttgtttatattttgtttatCATGATGTTGCATTTCAAATA
TGGTATTTTTGTTTCGGA Run BLAST on NCBI transcript from alignment at sc0000127:160728..164468+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011344 ID=TCONS_00011344|Name=TCONS_00011344|organism=Clytia hemisphaerica|type=transcript|length=3741bp|location=Sequence derived from alignment at sc0000127:160728..164468+ (Clytia hemisphaerica)
CTTGAAGAACTGaagaattttgatttgattttttttctaactaAAGACAG
AGAGACAAAAAATGGAGTTATTCCTGAGGCGAGAAGGTGAGATTGTCTTT
CGTTTTATGTGAGTGCGGGTGCACGGCGAGTCATGTGGGTGTTTTTGTGA
ACAAAATTTCCCTGTAATAAAGAACGCGAAATATATAAATTGGCGGTACT
ATTTTGCGATTTTACTTGTGTGCTGTGGGTGTACTAAATTAGATATATTT
AAtcattaaaatttacaaaaattccatGAAAGCAGGCACTCAATCACACT
ATTTACTGTGCTGTGCACCCGTTTCTACaacaatatattttttctccatt
tcttCAAATACTAAGACGCTTACTAATTCTTTGTATTATTTGACAAAGTC
TTagttttgtttatgtttggGTTACCAAGTGGTACGAAAATCCCGGATTC
ATGACAGTGATGTCATTTTGTCGAGAGTGGAAACCTCGTCATCCCCTCTC
CTTTTCTCATGCTCTCCTTTCTAAGGTTTTAATCTGAGCCGTGTggtaaa
aaaagggaaatttcaatgaaattttgtgtgttCGCTACGCAATATTTTGA
CCTTATTTGGTGAATTATTTCACAATACTTGATACTAGATCGTATAACTG
TGGATTGTGATTTCTTAACAATTATTCTATCAGAAATTACTCAATGGGCT
TATAAACGGTTAGTTTCTCGTAAGGGTTTTACAATGTCTTGGCTCGGGAC
GTTTTTTCTGTAAATGGGTATAACCATGGCGACTAACTGAACTATCTGTT
ATTCCGCAGGGTACtgtaaatagaaaacaaatggTTTGAAAATCCCAAGT
AAACTTACATTCGTTGTAGTTGTTATACCCGTCCTCTACTCGTCAATTGT
ATGAGATGTTTGTATGTCATGGTATCATTTAAATCTTGTATTTCTCTTTA
CATTTTCAGGCATGATGAACACGCCAAGACCAGTCCCGACCATTGCTGAT
GATTCAAATTTCAGCAGAAAGAAGAAATCACTCTTGAACGACAGTCTATA
TGCGCCGCGTTCACCCGTCAAATCAGCACCGCCCATTAGTCGTATTTTCC
GCCATCGACGTGGCTCAACGCCCGGCGCCCATTCAGTTAGCTTCAGAAAA
TCTGAAGTGCAAGGAGATGTTAGTATGACAAGCCCATTATACAAGACTTA
CGATCAATTGTATTTTGATCAATGTTTCACCAAATTATCAAAAGTGGGCG
TTGGCTCTTTCGGAGAAGTATGGAAAGTTCAAAGCAAGGAGGATGGAAAA
TTATACGCCATTAAAAAGTCACGTGATCGTTTCCGTGGAGACTTCGATCG
TAAACAACGCTTGGAGGAAGTCAATAAAAGTGAGCGGATCCAGGGCCACT
GTAATTGCGTCTATTTCCATAAAGCGTGGGAAGAGCTAGACTATTTGTAT
ATTCAATACGAATTGTGCGAGATGAGCTTGAAAGATTACGCCGAAAAAGT
GCAATCGGTCGAGGAGAAAGAAATCTGGAAAATGATCATCGATTTTTGTT
ACGGGCTTAAACATCTTCACGATGCTAACCTTGCCCACATGGACATTAAA
CCGGCTAATTTGTTTCTTGGTCGTGATGGCAACTATAAGATTGGAGACTT
TGGATTGGTTGTTGAGCTAACACGTGACGTTGATGCTATGGATGGTGATT
CCAAATATATTGCACCTGAACTTCTTGAAGGAACTTTCTCAAAAGCAGCT
GATATCTTTAGCTTAGGTATCACTGTTTTGGAACTGGCGTGTAGTCTTGA
ATTACCGAACGGAGGACCTTTGTGGCAACGTTTGAGACAAAAGCAATTGC
CAAACAAATTCACCACTGGTTTATCGGATGATTTGATTCTCTTAATCTCC
TCTATGATGGATCCAAATCCTTCGAATCGACCAACAGTTGACCAAATCCT
CCGAATGCCGTGCGTACGTCAAGTCAATACACGGCGTCCACCAATCAGTA
CTTACGTCTCAACAATCACGCAACCGTTCTTTAGTCTATGGTTCTACGTC
ATGTGGATGCTAACATCAATTACGTCATTCTTCAAACGTGATTACCGTAC
ACAGATCTCACTTCATCACATGAGAGAAATCAAGCGACCGAGAACTCCTT
CTCCTAGGACCAGTGTCTTTGGCGAGGAAGGATGCACTCCACTTAATACT
CATAGCAAAGCCCAAGAATCACTTTCATCGCAGATCGAGACGACAGTGTT
TTCCTCTCCAGCTAAGCGATCACAACAAAAGCTACGTGCAAACATGGTTA
GCcctcttttcaacaaaaacagtCCTTTATTCAGACCTATGTTTAACCAA
AGCAAGTCACAAGAATCGTCCCCAAGTGGTCTATTTGGCGAGTCACCTAT
AACCAGAGACAGTTCCAAAAGCAGTAGTAGAAACACTAGTATGGATAGTC
CCGACCTAACAGACTGCTCACCGCAAACTGGCACGGTGAGTGAACGAATT
GTCCGCTCGCGGTTGTTTACATGTTCTAGTGACGAGGACGAAGACTTTGA
TTTACAAAGAGTTCCTAAAAACCTTATGAGTAGTTTTAAAGAAGACTCTG
AGTAATGTTCATTTATTTCTCTTTTTGTCTTGTTCTTTCATTGTAAATTC
ATTGGGGAATAATTCAGAATAACTATTGCTCTTACTCATTGCGAGTCCCC
CCTCCCCATTTCCCACCCTTTTTGTAACTTCACCCCATTGAAAAACCCGT
ATANTCTATGGTTCTACGTCATGTGGATGCTAACATCAATTACGTCATTC
TTCAAACGTGATTACCGTACACAGATCTCACTTCATCACATGAGAGAAAT
CAAGCGACCGAGAACTCCTTCTCCTAGGACCAGTGTCTTTGGCGAGGAAG
GATGCACTCCACTTAATACTCATAGCAAAGCCCAAGAATCACTTTCATCG
CAGATCGAGACGACAGTGTTTTCCTCTCCAGCTAAGCGATCACAACAAAA
GCTACGTGCAAACATGGTTAGCcctcttttcaacaaaaacagtCCTTTAT
TCAGACCTATGTTTAACCAAAGCAAGTCACAAGAATCGTCCCCAAGTGGT
CTATTTGGCGAGTCACCTATAACCAGAGACAGTTCCAAAAGCAGTAGTAG
AAACACTAGTATGGATAGTCCCGACCTAACAGACTGCTCACCGCAAACTG
GCACGGTGAGTGAACGAATTGTCCGCTCGCGGTTGTTTACATGTTCTAGT
GACGAGGACGAAGACTTTGATTTACAAAGAGTTCCTAAAAACCTTATGAG
TAGTTTTAAAGAAGACTCTGAGTAATGTTCATTTATTTCTCTTTTTGTCT
TGTTCTTTCATTGTAAATTCATTGGGGAATAATTCAGAATAACTATTGCT
CTTACTCATTGCGAGTCCCCCCTCCCCATTTCCCACCCTTTTTGTAACTT
CACCCCATTGAAAAACCCGTATAAAATGAACCATTTTTTGTAAATCTCTC
GTGTCTCTtcagggtcaaatttttccctttttctctTTACCCCACTGTTT
CCCAATAGAATTATAGATATATATTAGATTAGAAACTACAAATTTTGGGT
TGACATTTTTTTTAGATATAGTTGCTTCGTTTATATGgagttgatttttc
tttggaaaaagttttttgtaaatattgatgtgtttgtttatattttgttt
atCATGATGTTGCATTTCAAATATGGTATTTTTGTTTCGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011344-exon-sc0000127-1491911889:160728..160813 | TCONS_00011344-exon-sc0000127-1491911889:160728..160813 | Clytia hemisphaerica | exon |
| TCONS_00011344-exon-sc0000127-1510915933:160728..160813 | TCONS_00011344-exon-sc0000127-1510915933:160728..160813 | Clytia hemisphaerica | exon |
| TCONS_00011344-exon-sc0000127-1575043694:160728..160813 | TCONS_00011344-exon-sc0000127-1575043694:160728..160813 | Clytia hemisphaerica | exon |
| TCONS_00011344-exon-sc0000127-1491911889:161687..164468 | TCONS_00011344-exon-sc0000127-1491911889:161687..164468 | Clytia hemisphaerica | exon |
| TCONS_00011344-exon-sc0000127-1510915933:161687..164468 | TCONS_00011344-exon-sc0000127-1510915933:161687..164468 | Clytia hemisphaerica | exon |
| TCONS_00011344-exon-sc0000127-1575043694:161687..164468 | TCONS_00011344-exon-sc0000127-1575043694:161687..164468 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127 | supercontig | sc0000127:160728..164468 + |
Blast
BLAST of TCONS_00011344 vs. Swiss-Prot (Human)
Match: PMYT1 (Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase OS=Homo sapiens GN=PKMYT1 PE=1 SV=1) HSP 1 Score: 275.404 bits (703), Expect = 2.153e-81 Identity = 154/345 (44.64%), Postives = 219/345 (63.48%), Query Frame = 2
Query: 89 MMNTPRPVPTI--ADDSNFSRKKKSLLNDSLYAPRSPVKSAPPISRIFRHRRGSTPGAHSVSFRKSEVQGDVSMT--SPLY-KTYDQLYFDQCFTKLSKVGVGSFGEVWKVQSKEDGKLYAIKKSRDRFRGDFDRKQRLEEVNKSERIQGHCNCVYFHKAWEELDYLYIQYELCEMSLKDYAEKV-QSVEEKEIWKMIIDFCYGLKHLHDANLAHMDIKPANLFLGRDGNYKIGDFGLVVEL--TRDVDAMDGDSKYIAPELLEGTFSKAADIFSLGITVLELACSLELPNGGPLWQRLRQKQLPNKFTTGXXXXXXXXXXXXXXPNPSNRPTVDQILRMPCVRQ 1099
+ TP PVP + FS K+ L+ SL P K + PISR+F R TPG H + R+ +G+ S T SP Y + + +F Q F +LS++G GS+GEV+KV+SKEDG+LYA+K+S FRG DR ++L EV E++ H CV +AWEE LY+Q ELC SL+ + E S+ E ++W + D L HLH L H+D+KPAN+FLG G K+GDFGL+VEL + +GD +Y+APELL+G++ AAD+FSLG+T+LE+AC++ELP+GG WQ+LRQ LP +FT GLS +L ++ M++P+P R T + +L +P +RQ
Sbjct: 21 LSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPP-AKGSIPISRLFPPR---TPGWHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLRQ 361
The following BLAST results are available for this feature:
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