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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011342 ID=TCONS_00011342|Name=TCONS_00011342|organism=Clytia hemisphaerica|type=transcript|length=1201bpRun BLAST on NCBI protein sequence of TCONS_00011342-protein >TCONS_00011342-protein ID=TCONS_00011342-protein|Name=TCONS_00011342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp MEDRGSQLSGTSLKVLLAESTFWFDLEQSWNKTQDENEEVDRTSLESSKNRun BLAST on NCBI transcript from alignment at sc0000127:140896..173193+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011342 ID=TCONS_00011342|Name=TCONS_00011342|organism=Clytia hemisphaerica|type=transcript|length=32298bp|location=Sequence derived from alignment at sc0000127:140896..173193+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000127:140896..173193+ >TCONS_00011342 ID=TCONS_00011342|Name=TCONS_00011342|organism=Clytia hemisphaerica|type=CDS|length=7965bp|location=Sequence derived from alignment at sc0000127:140896..173193+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011342 vs. Swiss-Prot (Human)
Match: ANC2 (Anaphase-promoting complex subunit 2 OS=Homo sapiens GN=ANAPC2 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.069e-17 Identity = 45/153 (29.41%), Postives = 85/153 (55.56%), Query Frame = 2
Query: 743 LRNINLFNEILFQLDLVEEMANPAIVTLIYQQLTGFLEKHCKSDYSENWLQRVFTWMDKGLMSWLKFVNSKFSILDSHGMICDQADEINTFSIESWKQRLEYFVYKAFAELRISEMFEIIVEYPDSLPAIKDLQECLSKTETRRLLTSSLKSA 1201
L + +++L +L L+E ++ A+ T ++Q +E C+ +Y ++L+ W+++ ++ WL K + D A ++ W+ ++ F Y+ +A LRI E+F I+ ++PDS PAI+DL+ CL +T+ R+ L SLK+A
Sbjct: 237 LEQFHQLSQVLHRLSLLERVSAEAVTTTLHQVTRERMEDRCRGEYERSFLREFHKWIER-VVGWL----GKVFLQDGPAR---PASPEAGNTLRRWRCHVQRFFYRIYASLRIEELFSIVRDFPDSRPAIEDLKYCLERTDQRQQLLVSLKAA 381 The following BLAST results are available for this feature:
BLAST of TCONS_00011342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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