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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011340 ID=TCONS_00011340|Name=TCONS_00011340|organism=Clytia hemisphaerica|type=transcript|length=2416bp
tttttccccacatctgagcctagatatgcttataagtgcaatgcttataa
aaaaaaaaacatgtaatgtttgatttttcaagaaacCGGAGGTTTTTTAT
GGTGtcacttttaaaagtttttcttgatttctattcgagaaaaaaatgtt
tccaaGGCCCTATTACGAAACCTCGTGGTTCCGCCACTGAAAATATTTCG
TCAGGAATTTTTGGACCCCGGTAAAATATAGCAAGATAATTTTGAAATCG
AAACATTGAGTTCGAAAAGTGGGATAATAGTTTTGATGATGTACATTCAA
TCCAAAATTGGCTAATTCGGAGGCAAATTTCCAAGTTTGTATTTTGGCGC
CCATCCAGTTAGACATGTGAGCAAAACAAGCTAGAAATTGTCCTCTTTTG
GCTTAGTACTGCTATTTCGGAGGAGAGTGTGAATAGGAAAGACGCGCTAA
GTAAGTGTGACCAGAGAATCTTTTGGTCCCAAAAAACGGGTGCTTTAGCG
AGGGGACACAACGTTACTGTTAGGAAGGAGGAAGAAATTGAGATTTGCAG
TTTATTAAAAATGCAATTATATAAttcgaaattaaaaaagataTAGAGAA
AAGGtaatatttacaaaagtataCTAAGAAAGATAAGTTAAATggttaaa
tatttttcataaattttctgattggtttTGATCGTTATCAGCTGTATTGT
TCGTTTCTGCAATTTTCTTAGACCATTCTTGGTTTGGGATTTCATTCAAA
GTGATTCGTTTTTGTGGATTAGTTTCCAACATGGACATTATTAAAGAACG
TAACTCATTCGATACCATCTGTTTTGTTCTTGTGAAGTTTGGACCTTTTT
TCATTTGTCGGATTTGATCTGCTTTGTTTGAATCGTCGAAAGGCATAGTG
CCTGTTGAAATGATGTATAGAATGCAACCCAAACTCCAAACTTCAGCACT
GGGTCCATCGTAAGGAATTCCTATAAGGATATTGAATcaacttattattt
tttctatataTTGGACTGAGAATCGATGACTCGACTTCACCCTTCAAGAG
AATTTGAAAGGATAGTTACAGAAATTTAATGTATTTTGTTAGCAATGTTT
GATACAAAGACACGATCCGACGAGTTACTTGAGCAAGAACATAAACCTAT
GAAAAATAGACTCTGAAATAGTTTACAGTATCTCAAGAAAAGAGTTTATT
TCGTACAGGGGATGAGGGAGGGCTGGAGAAAATGTGCTGACCAGACCTCA
GAagaccgacccttagagagaccaaactTTAGAGAAAAAGTGACCCTAAC
aggacgattttcgaaaaatcctTAGGGagactttttgttatttttgaaaC
GCTTAGAAATGCACATACCAagcctatttttgcctaacttCCCCTGGATt
ttgttaaggaaaatttttaaagtcaTGCAAAACAAATCTCACCTTTTAAA
ATTTCGATGGGAGCATATGCTGAACTTCCACAAAACGTCTTGTTCAGTTC
ATGGAATTTTGGTAAATGTTTAGCAAATCCAAAGTCTGTTAGAAGTGGTT
TCAAATCATGGCTTAATAAGATGTTTTCACATTTTAAATCTCTGTGTAAG
ATGTTGTACGAGTGTAGGTACGCCAGAGCATGGGAAATCTATAACAACAG
AAACATTGAATAGGTTAGTTATACAGTCTTACCCCAATATTTTGGCcttc
tgtgagaagggagttgATGAATTTTTCTCAGTTGGTCTGTGAAAAGGGAG
TTGATGAAGAataggaaaaaattcaaattgatgTTTCGACGTAAACCATA
ACTATACTAAGAATCCAAAACTGAAATAAGAAATGCTGGATTATTTCAAA
GGTCATTTACTGCAGTCCAAATTCGAGGTTATATTTAGACTCTGGCAAAG
GAGCAAGTATATCCCTAACATTAATTTTCTTATTTGtatgtatatttatt
tttaaacgcatttttaattttaaattgtaaatatttttagcATGAGTTTT
TTTGAATACCCGAATATTCTTTATAAAATATGAATTCCTTGGCAGACAGT
GTAACCCATTTTtaccttaaaggttttgtttttaaatgagagtgatatcg
tttgcttactcatcaattttaattcacaagcttttccaTATTGGATTGAC
ATGattgtggagcaagattggtcagaaagaggaaaagaaaaaccttttta
tgcttatatcagcataatataacaatagacagaaactgtcctggtatgaa
atatgtgtctgatatgaaacgggaacacttatgtaaaaataaaaccttta
atactTTCCCTTGTGTTTATGGCCGATCACTGAGtttgtagattttttat
ttGGGTTTGTTTTACTCCATAGGAGCAAAGGAGCACATACGTGTTTTATT
CTGTGAGCAGTTTTTG Run BLAST on NCBI transcript from alignment at sc0000127:68590..71086+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011340 ID=TCONS_00011340|Name=TCONS_00011340|organism=Clytia hemisphaerica|type=transcript|length=2497bp|location=Sequence derived from alignment at sc0000127:68590..71086+ (Clytia hemisphaerica)
tttttccccacatctgagcctagatatgcttataagtgcaatgcttataa
aaaaaaaaacatgtaatgtttgatttttcaagaaacCGGAGGTTTTTTAT
GGTGtcacttttaaaagtttttcttgatttctattcgagaaaaaaatgtt
tccaaGGCCCTATTACGAAACCTCGTGGTTCCGCCACTGAAAATATTTCG
TCAGGAATTTTTGGACCCCGGTAAAATATAGCAAGATAATTTTGAAATCG
AAACATTGAGTTCGAAAAGTGGGATAATAGTTTTGATGATGTACATTCAA
TCCAAAATTGGCTAATTCGGAGGCAAATTTCCAAGTTTGTATTTTGGCGC
CCATCCAGTTAGACATGTGAGCAAAACAAGCTAGAAATTGTCCTCTTTTG
GCTTAGTACTGCTATTTCGGAGGAGAGTGTGAATAGGAAAGACGCGCTAA
GTAAGTGTGACCAGAGAATCTTTTGGTCCCAAAAAACGGGTGCTTTAGCG
AGGGGACACAACGTTACTGTTAGGAAGGAGGAAGAAATTGAGATTTGCAG
TTTATTAAAAATGCAATTATATAAttcgaaattaaaaaagataTAGAGAA
AAGGtaatatttacaaaagtataCTAAGAAAGATAAGTTAAATGGTTAAA
TNTAATTCGAAATTAAAAAACATATAGAGAAAAGGtaatatttacaaaag
tataCTAAGAAAGATAAGTTAAATggttaaatatttttcataaattttct
gattggtttTGATCGTTATCAGCTGTATTGTTCGTTTCTGCAATTTTCTT
AGACCATTCTTGGTTTGGGATTTCATTCAAAGTGATTCGTTTTTGTGGAT
TAGTTTCCAACATGGACATTATTAAAGAACGTAACTCATTCGATACCATC
TGTTTTGTTCTTGTGAAGTTTGGACCTTTTTTCATTTGTCGGATTTGATC
TGCTTTGTTTGAATCGTCGAAAGGCATAGTGCCTGTTGAAATGATGTATA
GAATGCAACCCAAACTCCAAACTTCAGCACTGGGTCCATCGTAAGGAATT
CCTATAAGGATATTGAATcaacttattattttttctatataTTGGACTGA
GAATCGATGACTCGACTTCACCCTTCAAGAGAATTTGAAAGGATAGTTAC
AGAAATTTAATGTATTTTGTTAGCAATGTTTGATACAAAGACACGATCCG
ACGAGTTACTTGAGCAAGAACATAAACCTATGAAAAATAGACTCTGAAAT
AGTTTACAGTATCTCAAGAAAAGAGTTTATTTCGTACAGGGGATGAGGGA
GGGCTGGAGAAAATGTGCTGACCAGACCTCAGAagaccgacccttagaga
gaccaaactTTAGAGAAAAAGTGACCCTAACaggacgattttcgaaaaat
cctTAGGGagactttttgttatttttgaaaCGCTTAGAAATGCACATACC
AagcctatttttgcctaacttCCCCTGGATtttgttaaggaaaattttta
aagtcaTGCAAAACAAATCTCACCTTTTAAAATTTCGATGGGAGCATATG
CTGAACTTCCACAAAACGTCTTGTTCAGTTCATGGAATTTTGGTAAATGT
TTAGCAAATCCAAAGTCTGTTAGAAGTGGTTTCAAATCATGGCTTAATAA
GATGTTTTCACATTTTAAATCTCTGTGTAAGATGTTGTACGAGTGTAGGT
ACGCCAGAGCATGGGAAATCTATAACAACAGAAACATTGAATAGGTTAGT
TATACAGTCTTACCCCAATATTTTGGCcttctgtgagaagggagttgATG
AATTTTTCTCAGTTGGTCTGTGAAAAGGGAGTTGATGAAGAataggaaaa
aattcaaattgatgTTTCGACGTAAACCATAACTATACTAAGAATCCAAA
ACTGAAATAAGAAATGCTGGATTATTTCAAAGGTCATTTACTGCAGTCCA
AATTCGAGGTTATATTTAGACTCTGGCAAAGGAGCAAGTATATCCCTAAC
ATTAATTTTCTTATTTGtatgtatatttatttttaaacgcatttttaatt
ttaaattgtaaatatttttagcATGAGTTTTTTTGAATACCCGAATATTC
TTTATAAAATATGAATTCCTTGGCAGACAGTGTAACCCATTTTtacctta
aaggttttgtttttaaatgagagtgatatcgtttgcttactcatcaattt
taattcacaagcttttccaTATTGGATTGACATGattgtggagcaagatt
ggtcagaaagaggaaaagaaaaacctttttatgcttatatcagcataata
taacaatagacagaaactgtcctggtatgaaatatgtgtctgatatgaaa
cgggaacacttatgtaaaaataaaacctttaatactTTCCCTTGTGTTTA
TGGCCGATCACTGAGtttgtagattttttatttGGGTTTGTTTTACTCCA
TAGGAGCAAAGGAGCACATACGTGTTTTATTCTGTGAGCAGTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011340-exon-sc0000127-1491911889:68590..69192 | TCONS_00011340-exon-sc0000127-1491911889:68590..69192 | Clytia hemisphaerica | exon |
| TCONS_00011340-exon-sc0000127-1510915933:68590..69192 | TCONS_00011340-exon-sc0000127-1510915933:68590..69192 | Clytia hemisphaerica | exon |
| TCONS_00011340-exon-sc0000127-1575043694:68590..69192 | TCONS_00011340-exon-sc0000127-1575043694:68590..69192 | Clytia hemisphaerica | exon |
| TCONS_00011340-exon-sc0000127-1491911889:69274..71086 | TCONS_00011340-exon-sc0000127-1491911889:69274..71086 | Clytia hemisphaerica | exon |
| TCONS_00011340-exon-sc0000127-1510915933:69274..71086 | TCONS_00011340-exon-sc0000127-1510915933:69274..71086 | Clytia hemisphaerica | exon |
| TCONS_00011340-exon-sc0000127-1575043694:69274..71086 | TCONS_00011340-exon-sc0000127-1575043694:69274..71086 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127 | supercontig | sc0000127:68590..71086 + |
Blast
The following BLAST results are available for this feature:
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