TCONS_00011339 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011339
Unique Name	TCONS_00011339
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1305

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000127:62060..67245+

transcript sequence

>TCONS_00011339 ID=TCONS_00011339|Name=TCONS_00011339|organism=Clytia hemisphaerica|type=transcript|length=1305bp
aaaaaaggtaaACAATGAGAAGAAAATGGATTTTTCTTTCAACGTAAACA
GCGTCTTGACAAAGGAAATAACACTggtgtcaaaaaaagatttattattt
tCGTCAACTAGTAACGACCATTACTCTCAGTCCAGGAATCGGCTCAAAAT
TTGAAAGGTGCAATAACCACTTCGTTCAAATTGAAAAGCTCACAAGATCA
TTTGTATATTTTGAAAGATAGCAGTGCTGATAAATCTTTAGGACAAGTAG
TGGGGATGATAAGAACTGGTGAAAAGAGACTATTTCTCTCCGATGCATAC
GGGCAACAACACGAGTGTCAACCGCTGTGCGTATTGGATTTCTATGTACA
CGAAACGAAACAAAGAAGTGGTTATGGTCTCAAATTATTTCAACATATGA
TTAAGaacgAAAATATACCCGCAGAACAGTTAGCCATCGATAGACCATCC
GCGAAATTCAtcaactttttaagaaaacattTCAATTTGAATAACCCTCT
ACAACAAgTGAATAAATTTGTcatctttcaaccttttttcaACGACCCAC
AAGCTATCGGTTTAGTCGAAACGAATCGTCGTAGAAGTGCACCCGCCCCA
CGAAACAAGTTCATCGATAATTGTTCAAAATTAACTTCAAGAAACGTATC
AAGTGCTAATCTTAACTCGAATAGTCAATCCCGCCTGAATGCACTGGGTA
GTCTATCACACGTCAAACCATATAGAGAAAATAACTTCTCGTCTACATCA
AATCAACAACAAACAAACTCGCCTTTGCTGAGCTCACGATCGTCCAATAG
ACCGTTTGGTAGTCATGCCTGCAGGAGACAACTTACCcatcaaaattctt
caaatttaaGCTCATACAGTCGCTATTCATCATTGAACAGTACCTCGTCA
CCAAAAAGCAACTCTTCGCCAACCTCCCTTCCGCCTTTACAACCAACCGC
CAGCAAGAGTATTAAATCTCATCCGCCAAACGATGTCATACACCGTGACC
ACCTTCGTAATCAACGACACACAGAAATGCACGGACGAAATAACAACAAT
CAGCAAACGAACGCTGATCGAAATATCACGTCCCTTGACAACCCAGTCGT
CAATCAAAGCATTTCACCatctacaacaacaacaacaaatgatCAAAGCT
ACACGTTAGGATTAATCGAACAATTGAATAAACAGAAAACTTTCGGTACA
AGTTGGAATGTGTTTGGTATACCCAATAATAATGTAAAGACATCAAACCC
TTACTCCGGTATGGATAAATCACGGAAGTGATTGTTACGGGACGGGGACG
GGGAC

Run BLAST on NCBI

transcript from alignment at sc0000127:62060..67245+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011339 ID=TCONS_00011339|Name=TCONS_00011339|organism=Clytia hemisphaerica|type=transcript|length=5186bp|location=Sequence derived from alignment at sc0000127:62060..67245+ (Clytia hemisphaerica)
aaaaaaggtaaACAATGAGAAGAAAATGGATTTTTCTTTCAACGTAAACA
GCGTCTTGACAAAGGAAATAACACTggtgtcaaaaaaagatttattattt
tCGTCAACTAGTAACGACCATTACTCTCAGTCCAGGAATCGGTAattatt
tatttgaaatctGCATTTTATACCTCAGGAGCTATTTTTGCCTCCTAGGA
AGTTGAATTCATTACAGCCTCCCATTTTGAGCCCAAaactttccaaattt
tgaagttACTCCTCATTATGGTCTCTTAACGAATCTCAGGTGACCTACAA
CAGGATTGAGCCACACAAAATCTCTACGAAGGAAACCCACAAGATATTTA
ACAAACATTCACAAACATTAAAGTAGCATAAtgtaaaaaagcaatttaga
ttTATGAGGCTGTCAGAGGGTATGTGTTTTTCAACCTTTGGATATTTTCA
GCCTGAAGAACAATTtataattatttattatttcattattttagaaATGA
TCATACTCAAAGTTTGTCAAAAATCATCGATGCATTAGGTGTTTGTTCGG
CAAAGGTTATTTCTCTTTTTCACAAATTGTGAATCTTGTTTTTTCCACCA
GGTGCACCAAAAAAGAATACAGGTTTTTCAAGATCTTGTAAGCTTACGGT
TAAAGATTTTTTACCCAACCTAAAATGACAAAATTCATTCCAAAGGTGAG
GGAGAGCGCTACTCCACTATATAGATTCCCccatttacccttgatccttc
cctGTCATTTCTAAGCATCAAACAGAGAGACATCAGTTAccattttttaa
gcctttgatATGACCTGGTGGAGACTgaacctaaaattttgcacaccaTA
GCTCCTCTACCTTTATCTTATCGTCATGCATGGTTTTTATCTCGCTTTCT
CTTTCTTCTTGATAGGCTCAAAATTTGAAAGGTGCAATAACCACTTCGTT
CAAATTGAAAAGCTCACAAGATCATTTGTATATTTTGAAAGATAGCAGTG
CTGATAAGTaagtaatttctttctttttttgaattgccaaaaatatatat
atataccgtattacttctaATAAACGCTAcgttcttttaaacgcccctcg
aATAAAAGAACGTTCATCCCtccctaataaaaaaaaacgcccTTTTCGAA
CCCGTTTTTTAAATCTCAAAGTTAACATATTTGTAATAGAAATTTCAAGC
TTTCTTTTCATCGATTTCATTTTTCTATGGATTGTTTATTATCCTTTATC
AATTCAGATCTTTAGGACAAGTAGTGGGGATGATAAGAACTGGTGAAAAG
AGACTATTTCTCTCCGTAAGTATATTTACTCTGTTTTGTGTACGATCGCT
CCCCATTTGTGGCGAGGGTTAACCCTTTTTTGCGCTTCATCGTAGGGATG
GGTGAAATAAGTAGGGGGTTCAGGGTGATTAccaagcacttttttaccac
cgTTATTCAGTGGCAAAAACTCATTTTCGAATTGAgttttcaaactcaat
tttgTAAAGAGAAATATGTAAAAGGTAAATAATGCAAGATAGAGAAATGA
CGGTACAAAAACTTGAAGGAAAATCAACTCAATCTATTGTAACGAGTCTA
ACGAATATCGAAGgtaaaaattgagtttttttatTAATCAAGTTAGCCTC
GTAAAATAAAGGTCTTGGAACTTTTAATAAACTTGCAAAGTGAATCCCTA
AAAATTAAGCACGGCATTAACATGTTTTAACCTCTCAAACCTTAGAATAA
CATAATTAAAAATGTATACGAAGAATACAATAATTTCCTTGTTGTTGTCT
TCGTTTCCCAACtatgataatttttttcctCACGAATAATATCAAACTCA
ACTGCATAATCGCCATTGATtttgacattcaacattcaacattcatcttT
TAGTGATGACGGCAAGCCATATtgttttcctttcttttcttcAGGATGCA
TACGGGCAACAACACGAGTGTCAACCGCTGTGCGTATTGGATTTCTATGT
ACACGAAACGAAACAAAGAAGTGGTTATGGTCTCAAATTATTTCAACATA
TGATTAAGGTATaccttttttttctataagaacagtAAGAACATAAGCCT
TCGAGACCCAAAATTTACGTATATTGTAAGAACATTCTATAAGACTTTGT
AAACTCCTGATCATGCAATGACCACAAAATGCTCTTATTACGAATATCtt
agaatatcttttaaaaAGCATTAAACACAAAAAGGTAAgatcaaaaagtt
tcaaaatatgtTTATTTTCTTCTAAAGGAAATTTGGGTATCAGAGGTCAG
TCAAATGGTGTAGGTTCCAATTGGAACAATCTCGTAATTTAATAGCTGAT
ATTTTAACTTAGCCATTATTGACAAACAGTACATAGtatcacttttcttt
tttagaacgAAAATATACCCGCAGAACAGTTAGCCATCGATAGACCATCC
GCGAAATTCAtcaactttttaagaaaacattTCAATTTGAATAACCCTCT
ACAACAAGTAAGCTCTTGTGACTTTTGTTTGTTCAATATTAACGTTTCTA
CATTTGGTATTCGAAAACTTCTTTACAGTTTGTCCGGATAAAAGGgagca
tatttttttcttcaaaaaatatgaaCTTCTACCTGCAAAATCGAATATCT
ATTTATGGGACAACGTAATCCTATCGGTATTATATTATTCATTAAATTTA
TTCAGTGGGATAacgagttttgaggattttattttatatataatcTGCTC
CACTCTTTTCCTGACAAAGCCGGGCATACGTGTAGTTGGTTGCCTTGGAT
CAATCTGCCTTATAAAGGGTAAGCCTAGCTCACAGGATTGGTTTATTCCA
CATCCGTTACACAGCGCTAGTCAATACTATTTCATAGCATATTTTATCTT
TCTTGCTACCATAAGTGAAATTATGTTCAATACTCAGAAATGGCTATGAT
CATGCTAATTCATAGTAAAGAACtatgaacattttgaaaatgaacaGCTG
AAATTTCCGAAAAATAAGATCTTCTGAAGCTCAACGAAAATTTACTGTAT
CTTGTATAAACCATGTAATTCTACATagcttttgattttcaatttcaggT
GAATAAATTTGTcatctttcaaccttttttcaACGACCCACAAGGTTAGT
TTGTTCGTATTTTTTATGTAATGTAGCCTTTCGGATACGTACCTGTTATT
TTTTAATGTCGTGCGAGTGTTAGATGGCGTTAATACCCTGATACTTGACA
GGTTTTCTCCAGAAATTCATGACGAAGGATATATTGTTCGGGGTTAGTAA
ACAAATCTCCAAGATCTCCATTTCTGTAAAGGTACATTTTGCCAAGAAGT
TTTCAGTGCTTTAGGTGTTGATGTTTTCCTTGGAATTAATGATGTTGATG
TACGGGAGATGAGGTTGATTACTAAAAAATGACACATCCTTCTTTCAGTG
CATCAAATTATAcatttcttgtcatttttaGCTATCGGTTTAGTCGAAAC
GAATCGTCGTAGAAGTGCACCCGCCCCACGAAACAAGTTCATCGATAATT
GTTCAAAATTAAGTAAGTATTTCAATACAGAATTCcatattttacatatt
ttgaacCAACTGCGCAGTTTTTAGTGTGGTTTAATGTTTTCCCCattatg
aaatatttcgttATAAATAACCGGTATCTCGACAAGATACTTTGAAGACA
AGTCCCATAATGATTTTGAAGTGTAAACAATATTATGCACAATACACACG
GGAATAACTGGAATAACGCCAGATACACTCTGGTAAAGAAAGGTGCAACT
TAATccataatttgtttttcttttgtatacCAGCTTCAAGAAACGTATCA
AGTGCTAATCTTAACTCGAATAGTCAATCCCGCCTGAATGCACTGGGTAG
TCTATCACACGTCAAACCATATAGAGAAAATAACTTCTCGTCTACATCAA
ATCAACAACAAACAAACTCGCCTTTGCTGAGCTCACGATCGTCCAATAGA
CCGTTTGGTAGTCATGCCTGCAGGAGACAACTTACCcatcaaaattcttc
aaatttaaGGTTTCTTAAATATAAAGGAATTTTTATGCTTCTTTTGATTA
TTAACCAAGAGACTACCCAGTTTTGAATAGATGTAAAGcaaatttttcca
tttctaaACCTAACTCCGATAACATCCGTGTATTTTTGTGGATTTCTGAT
GACAATGTAGAAAATACTTATTGTCGAAGTATCATAAAAAACTAAATTCT
ATTCTAGCTCATACAGTCGCTATTCATCATTGAACAGTACCTCGTCACCA
AAAAGCAACTCTTCGCCAACCTCCCTTCCGCCTTTACAACCAACCGCCAG
CAAGAGTATTAAATCTCATCCGCCAAACGATGTCATACACCGTGACCACC
TTCGTAATCAACGACACACAGAAATGCACGGACGAAATAACAACAATCAG
CAAACGAACGCTGATCGAAATATCACGTCCCTTGACAACCCAGTCGTCAA
TCAAAGGTACTTTTGAGGAACGTTTTATACCCTTCACCATGCTTTTCTCG
ACGTGCCTGATAGACAGTTTTAAGCCATAAATCGTAAATGAAACCGAGAC
GAAAAATATCTTCCATTTTATGGTACGGTATGGCAATTACAagggtattt
ttatttttttttaagaggACAGTGCTCAACGACTTTCAGAGCTTAGTTAA
GTTCATGAAATCGACCAATATGatgatttttcgaattacaCAATCCAGCG
GGCCTCGTTCTAAATTTGTTTTACCAAGATAACTTAATGCCAGCAGACGT
AATTTGTGAGTGTTTCCCTCTACTGAGATTTTTTGTGTCGATGTTTTGGG
ACTAGACATATAAAATAATGTGAATGTGAAATTGTTATTCTGTTTCAAAA
TGAGGCCcgattttgatttatttcgaGAAACGTGTATAATTGCAAAGGTT
TCGTCactttctaattttattctctcTTTTCCTTATCAAGCATTTCACCa
tctacaacaacaacaacaaatgatCAAAGCTACACGTTAGGATTAATCGA
ACAATTGAATAAACAGAAAACTTTCGGTACAAGTTGGAATGTGTTTGGTA
TACCCAATAATAATGTAAAGACATCAAACCCTTACTCCGGTATGGATAAA
TCACGGAAGTGATTGTTACGGGACGGGGACGGGGAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006358	XLOC_006358	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000127	supercontig	sc0000127:62060..67245 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.96772	0.316411	0	3.89283	5.51267	8.40716	1.93474	0.554441	0.0174297	2.21431	0	1.14364	0	2.97676	2.30364	0.726537	0	2.61273	5.63039	0.876722	0.773336	0.00674094	0.839342	0.211595	2.32754e-08	0.0486469	0.805888	0.095026	1.89004

Blast

[Close]

BLAST of TCONS_00011339 vs. Swiss-Prot (Human)
Match: ATAT (Alpha-tubulin N-acetyltransferase 1 OS=Homo sapiens GN=ATAT1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.301e-38
Identity = 72/154 (46.75%), Postives = 103/154 (66.88%), Query Frame = 1

Query:  142 AQNLKGAITTSFKLKSSQDHLYILKDSSADKS-LGQVVGMIRTGEKRLFLSDAYGQQHECQPLCVLDFYVHETKQRSGYGLKLFQHMIKNENIPAEQLAIDRPSAKFINFLRKHFNLNNPLQQVNKFVIFQPFF---NDPQAIGLVETNRRRSA 591
            AQNL   IT++ +++S++  +YILKDSSA  +  G ++G I+ G K+LF+ D     +E +PLC+LDFY+HE+ QR G+G +LFQ+M++ E +   QLAIDRPS K + FL KH+NL   + QVN FVIF+ FF   + P A  L  T   R+A
Sbjct:   57 AQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKVGYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRPSQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAA 210

The following BLAST results are available for this feature:

BLAST of TCONS_00011339 vs. Swiss-Prot (Human)

BLAST of TCONS_00011339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ATAT	4.301e-38	46.75	Alpha-tubulin N-acetyltransferase 1 OS=Homo sapien...	[more]

You are here

TCONS_00011339 (transcript) - C. hemisphaerica