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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011336 ID=TCONS_00011336|Name=TCONS_00011336|organism=Clytia hemisphaerica|type=transcript|length=2884bp aaaatatatttttggtgAAGGATAAGAGAAACTATACAacaattttcaga cattatcattGAGGGTATAAACAGAGAAAGGTCAACGATTTTGAGTTGCT GGAGTGAGAAAAATGTGGACGCGAGACCTAGCCATTGCAATTGGTTTAGT TTGTCTTGTACAAAGTGTAACATGTTCAATGCAAGatgtcaaaaagtgtc cgAACCATGAAGTTTTCACCGGCAGCCGAAAGTTAGATGGGATCTGTCAT GGCATACAAATTGACGACCAAATCTCATTCCCTAACTATTTGGGGCATAG AAACTTAAACGAAGCTATCAAATCAATCAGTTTATACAAAGTCTTCATAA AGCTTGGCTGTTCAAATCAATTTGAAAGATTCGTATGCGCGTTACATTTT CCGAAATGTAATAACAAGAAACCACCGTGTCGGCAGATTTGCGAATTATC GCGTGATAGTTGTGCACCCAAACTAATGGAGTTCGGAATGAAATGGCCCG TCTTTTTGGGTTGTGGACGGTTCCCAGATAGTGAATATGCTGATGTCTGT ATTGGAGGAACAAAGAAAGCCACGGTAGCACCAGCTCCCGAAAGATCAAG TATTCCTACGACGACAACACCTAAATCATTTCCTACCACGGTAAAACAAG AGCCGGTACGACAGTCGAACATGAAAACAACAGCATCACAAAcagcagaa aaatcaaaatgtatGTCTATCGCTGAcaataaaataataatgaaaGGATT TTGTAGAAATCGACCCTACAACTACACAATTATGAAGACCAAATCTGAGA TAGAGGAAGCAAATCTGGTAGGAAACCAATTCGAACCACTGTTCAAGGTC GAATGTTCCGAGCATATTCaagatttcatttgttcctaTTATTTGCCAAA GTGTGAAGCAAATAAACCCTTACCTCCGTGCCGAAGCCTTTGTAAGGAAG CTAGAAAGGGTTGTAAAGAGTTAATGAACAAATTTGGATTCCAATGGCCA CGCCACCTCCGATGTAGGCACTTTCCTAAGAGAAATCAAGAAGGAAACAA TTGCTTTATGGTTAAGAAAAAAGTACCTCCAAAGCCTACCTTAACACCAA AGCTACCAGTTAAAGGTGAATGTATAGCATTTGAGAAGCAGCCTGTACCT TTTAAGGGGAAATACTGTAAAGTTCTACCATATGACAGGACATTAAAGAT GAAAAAGACTACACTTAATTCCGTTGGAAGTAAAGTGGTACGGTACATCC CTTTCTTTCAAAGATGTTCAAAACATCTTGAGTTATTTGTGTGTTCGGTG CATTACCCGAAATGTGAATCCGGACTTGTTTTACCTCCATGCCGAAAGGT TTGTGAGGCTGCCAGAAACGGTTGCAAAGATACAGTAGCGAGATTTGGAT TCAGCTGGCCGGAGAAACTCAATTGTCATCATTATCCtgtacaaaatgaa aataaagataacTGTTTCATGACTGATGGGGAAGAAATACAAAAGATTCG CCCCTCGAtaataaaaccaaacaaaacaTGCAACTTAGTTAGAGAAGTTT TGAGAAATAAAAGGATTTGCCAGCAGCTCCCGTACAGCTATACGTCAATC GATAAGTTAAAGGCGATAAGTGGTGCAAAGAGGATGATTGAAATGTTCAA CCCATTATATGCAGTCAGATGCTCTGATCATTTACAAAACTTTATTTGTT CTTATCATTTCCCAAAATGTGAACTGAACAAAGTTTTGCCACCTTGTCGA GAGCTTTGTGAAGCTTCTAGAAATGGTTGTAGTCTGTTGATGCAAAAGTA TGGTTTTCAGTGGCCAGATCAATTGAAGTGTGATCGATTCCCGAAAAAAG TTATCAATGAAAATAACTGCTTTTCCGGTGAAGAACCaagaacaaacaaa caaaaagcaaCTCAAAAGACAACAAAAAGGACTCAGATGACAACAAAATT ACCGAATTCTTCAGCCTCCCAAAAACCAAAGACATCGGAAATGGCAACCA AACCAAATCAATGTCAAGAACTCATAAGGAAATCATCAAATGTTTGCAAT AAACTACCCTACAAATATACTTCCATTGAAAAGTCATCAATCAGCTATGT CAAAAATTCAATTCTTGAAGTTCAACTTTATGAACCTCTGTTCAAAGCAG GCTGCTCAGATcaaatgcaaaatttcatttgttCATATTATTTCCCAAAA TGTGAACTGAACAAAGTTTTGCCACCTTGTCGAGAGTATTGTAAGGACGC TACAAATGGTTGCAGTCAGCTGATGGAAGAGTTTGGTTTTCAATTGCCAA AATACTTGAAATGCGATCGTTTTCCAAAACGAAACATCAACGGAGATAAC TGTTTTTCGGGAAAGATTTAATACAGAAAATCATGCAGAAAACTTTTCTC AAAGATTGCATCGACTACTTTCGGAGAAAACTGTTCAGGCAGAATGTAAT AATAAACCTTCATGAAAACGTTGAGAAAATTTATGTGGATAATCATACCT TAAAAACATTGCCTTAAAGGATTGAtatctaaaaaacaaaaaaaacgagA GATACTTACAAACCGATCGACGCTGTATGAATAGAAACAAAATTAGAATA CTAATTAAATAATATGAGAGCTTTATCATGGGGGGTTATCAGCTTTCTCA CAAGGCAACATTTcttaattttgttaaattacACTAACCAATTGTTCATT TGTTCATctgtatttgaaaaaaaagagaagaattAAAGTGGATTACCTTG TTCCTAATTCTTTTTTCCCTTATTCTTCTTGGTCGATTCTGAGCTACACC CATCTATGTGTCAATCATCAAAAAATAGACAGATTCTTGATCAGGATAAC ATAATTATTATATCTCtatctttatttgattttt Run BLAST on NCBI transcript from alignment at sc0000127:16822..22654+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011336 ID=TCONS_00011336|Name=TCONS_00011336|organism=Clytia hemisphaerica|type=transcript|length=5833bp|location=Sequence derived from alignment at sc0000127:16822..22654+ (Clytia hemisphaerica) aaaatatatttttggtgAAGGATAAGAGAAACTATACAacaattttcaga
cattatcattGAGGGTATAAACAGAGAAAGGTCAACGATTTTGAGTTGCT
GGAGTGAGAAAAATGTGGACGCGAGACCTAGCCATTGCAATTGGTTTAGT
TTGTCTTGTACAAAGTGTAACATGTTCAATGCAAGGTCAGTTTATTCCCT
TCTTTAGAGCCTTGTATTTTTAACATGCATTTGTGATTGACAAAAGTTGG
AATTGATAGCTGCAAGAACAAACCTGAAGTTAACGTACGGCTGGTTTAGA
CGAGGAAAATGTGTAAAAACCTTCAAACTTTGAGTTCCTTAAGCCCTGAA
ATCaaacttcttttgtttttagatgtcaaaaagtgtccgAACCATGAAGT
TTTCACCGGCAGCCGAAAGTTAGATGGGATCTGTCATGGCATACAAATTG
ACGACCAAATCTCATTCCCTAACTATTTGGGGCATAGAAACTTAAACGAA
GCTATCAAATCAATCAGTTTATACAAAGTCTTCATAAAGCTTGGCTGTTC
AAATCAATTTGAAAGATTCGTATGCGCGTTACATTTTCCGAAATGTAATA
ACAAGAAACCACCGTGTCGGCAGATTTGCGAATTATCGCGTGATAGTTGT
GCACCCAAACTAATGGAGTTCGGAATGAAATGGCCCGTCTTTTTGGGTTG
TGGACGGTTCCCAGATAGTGAATATGCTGATGTCTGTATTGGAGGAACAA
AGAAAGGTAAAAAGCATTAGGTTTAaagttgtctgtacacagacccagta
tctacgactaatttcaaaattcattgccgtacatagggtctgttgtcatt
gtcttttatcatttgagatttttcaaaccgaccgctgcgatggagtgcgg
GTGAGAGAAGGGAGGCGGCAAGAGAAGTTtatctatttataaatcatact
tcatcgcagaagtctccgtacgggaatttttttatcaaacagacaatgca
cacagagtgtactacgaagcgataaacgtgagatactaTTATTTACacgg
tcttctcgaggtgggatacgggatatacaaggtcagtaaaaaccgtattg
gtggcgaggcttgcCGAGTTTATAGCATCGCAATTGAAAGTCTTGCTCAA
TCCATATCAaccaaagaaaagtaaaaatcaaaataactttctCAAAATAG
ATTTTCTGCATCCTATTGACACAAACATTCTCAATCACTGTTTTcctctt
gttttattttttctgtcgtttcaaaacaaaacattcgaattttgaccaaa
acattcgaaagcgcattcgccaatatgcaatgtcttaattttttctcaat
cgaatgCGAGGAAGACAGATACGGTTtatatcccacctccacgtgatgtc
tttcgaccaatggaatcgcgagaatcttactgatgcgggatAAAATCTGG
TACAGAGTGGGTTTAAAGCCGAAGGCTAAAGAGGAATCTTCAaaccaagc
aagaaaaagtgaagcattaacatttgcgccgcatttagaataacggattg
aatctagcacttttcttttgttttcaggaggcaaatttttcgaaatctgg
cgatggattttactttatctctgtcgtttgtgtgaaaaccacacCACTTG
GATCGCGGGCTTTGGATGGAAAATAACTGCCATCTAAGAGTTACCTCTCT
TTAAACTCAATAGTGTTAGATGAAACTATGGAAATTGCAGTCATATTCCC
TCTGTTTGTATCTAACCAGTCTAAACAATTTCATTTCCTGGGTTTGACGG
GTGTCACTTTATTAAGGTATTTATTtccccttgagagtggtttctacata
aaaagtaaaacaaagtCCATTCTCTTTTAGTCTTAGTCTTAAACAATCTC
AAGCGAAATAAATACTTTAATAAAGTACAGTGCACACTCAGCGAATAGAC
TCGTAAAGTTAATTGATTTTTACCTTGTAAGGACAATATATATTGCATTA
AGCACATGCACCATAACCATATCTATTCAAACATCAACACTAAATACTCT
AGGGAAAAGAATTAGACTATAGATTGTGGTCAAGCTAAGCCagttaaaat
aatttaattctCAAACGTAATTCTCACTTCTTTCTAGCCACGGTAGCACC
AGCTCCCGAAAGATCAAGTATTCCTACGACGACAACACCTAAATCATTTC
CTACCACGGTAAAACAAGAGCCGGTACGACAGTCGAACATGAAAACAACA
GCATCACAAAcagcagaaaaatcaaaatgtatGTCTATCGCTGAcaataa
aataataatgaaaGGATTTTGTAGAAATCGACCCTACAACTACACAATTA
TGAAGACCAAATCTGAGATAGAGGAAGCAAATCTGGTAGGAAACCAATTC
GAACCACTGTTCAAGGTCGAATGTTCCGAGCATATTCaagatttcatttg
ttcctaTTATTTGCCAAAGTGTGAAGCAAATAAACCCTTACCTCCGTGCC
GAAGCCTTTGTAAGGAAGCTAGAAAGGGTTGTAAAGAGTTAATGAACAAA
TTTGGATTCCAATGGCCACGCCACCTCCGATGTAGGCACTTTCCTAAGAG
AAATCAAGAAGGAAACAATTGCTTTATGGTTAAGAAAAAAGTACCTCCAA
AGCCTACCTTAACACCAAAGCTACCAGTTAAAGGTGAATGTATAGCATTT
GAGAAGCAGCCTGTACCTTTTAAGGGGAAATACTGTAAAGTTCTACCATA
TGACAGGACATTAAAGATGAAAAAGACTACACTTAATTCCGTTGGAAGTA
AAGTGGTACGGTACATCCCTTTCTTTCAAAGATGTTCAAAACATCTTGAG
TTATTTGTGTGTTCGGTGCATTACCCGAAATGTGAATCCGGACTTGTTTT
ACCTCCATGCCGAAAGGTTTGTGAGGCTGCCAGAAACGGTTGCAAAGATA
CAGTAGCGAGATTTGGATTCAGCTGGCCGGAGAAACTCAATTGTCATCAT
TATCCtgtacaaaatgaaaataaagataacTGTTTCATGACTGATGGGGA
AGAAATACAAAAGATTCGCCCCTCGAtaataaaaccaaacaaaacaTGCA
ACTTAGTTAGAGAAGTTTTGAGAAATAAAAGGATTTGCCAGCAGCTCCCG
TACAGCTATACGTCAATCGATAAGTTAAAGGCGATAAGTGGTGCAAAGAG
GATGATTGAAATGTTCAACCCATTATATGCAGTCAGATGCTCTGATCATT
TACAAAACTTTATTTGTTCTTATCATTTCCCAAAATGTGAACTGAACAAA
GTTTTGCCACCTTGTCGAGAGCTTTGTGAAGCTTCTAGAAATGGTTGTAG
TCTGTTGATGCAAAAGTATGGTTTTCAGTGGCCAGATCAATTGAAGTGTG
ATCGATTCCCGAAAAAAGTTATCAATGAAAATAACTGCTTTTCCGGTAAG
TTTGAGTTTTAAAGGAATGCAAATAAAAAGGGTTTTATATAAGAGCACTA
CAAAGAAGACCgtacatttctttttctttttttcattcataAGTTTTCTT
CTCGAATCTTAGGTAAGTTATAAGATTTAATCTAcaataaagttaaaaat
ataATCTTTAAAGCGCTTCCACACTATACAAAACTTGTAACGCAAAGGGT
TAACCCAGATAAATATTTCGGACGGTTTTAGACGTCATGAGGTCGTAAAA
AAGTTATTCTTCTTAGCAACGGTGatttcttagaatttttttttcaattt
ttttcattgcaaaATTCAGGTGAAGAACCaagaacaaacaaacaaaaagc
aaCTCAAAAGACAACAAAAAGGACTCAGATGACAACAAAATTACCGAATT
CTTCAGCCTCCCAAAAACCAAAGACATCAGAAATGGCATCCAAACCAAAT
CAATGTCAAGAACTCATAAGGACTCATGAATCAtcaaatttttgcaataa
aCTGCCCTACAAATATACTTCCATTGGAAAGTCACCTTATTACGCCAAAA
GTTTTCTTGAAGTTCAACTTTATGAACCTCTGTTCAAAACAGGCTGCTCA
GATcaaatgcaaaatttcatttgttCATATTATTTCCCAAAATGTGAACT
GAACAAAGTTTTGCCACCTTGTCGAGAGCTTTGCGAGACTTCTAGAAATG
GTTGCAGTCTTTTGATGCAAAAGTATGGTTTTCAGCTGCCAGAAGAATTG
AAGTGTGATCGATTCCCGAAAAAAGATATCAATGAAAATAACTGCTTTGC
TGgtaaattcataaattttgaaaagtaaattttgtGAATTCTCAATGTAC
AAAATTACAGCCTAAAGTCTGTTCCTTAAAAAATTGGCAGTTTGCACATT
TTGATACATTCCTCTCTAAGAAGAAAAGATACaatcaaaatgttgaaaag
atAGTCAAGCGGAGgattttaagactttcaaactttttcggaaataaaga
tgaaaaaaaatcaagatcttTTCTACAGAacgaaagtttttgaatttata
CTTTTCTGAAAACTTGGAACTTCGCTGATTTCAATATGTTTTCAGGTTTT
TCATATCTTTCTTGGAGCGAAAGTTGCACCTCTCCAAAGTAGGTTagggt
aaaattagcaaaatggAAATTAAGAAGATTAAGATTAAAATCTTTTCAAC
ATGGTATTACTTTTAATTATGTCCTTCTATCCTTCAAGGGCAATTTATCA
AAATGTGGGACTGctatttttttttggaacagacttaAACTTAAAATCAA
AATCGTCGTAGTAGCAGGCGAACACCTTTCAAAAAACTCAATATAAcaca
ttttatttcttttattttcattcatgaTTTAGGTGGAGAACCAAGGACAA
CAAAAGCAACTCAAATGACAACAAAAATGACTCGAATAACAACAAACTTA
CCGATTTTTTCAACTTCCCTAAAACCAAAGACATCGGAAATGGCAACCAA
ACCAAATCAATGTCAAGAACTCATAAGGAAATCATCAAATGTTTGCAATA
AACTACCCTACAAATATACTTCCATTGAAAAGTCATCAATCAGCTATGTC
AAAAATTCAATTCTTGAAGTTCAACTTTATGAACCTCTGTTCAAAGCAGG
CTGCTCAGATcaaatgcaaaatttcatttgttCATATTATTTCCCAAAAT
GTGAACTGAACAAAGTTTTGCCACCTTGTCGAGAGTATTGTAAGGACGCT
ACAAATGGTTGCAGTCAGCTGATGGAAGAGTTTGGTTTTCAATTGCCAAA
ATACTTGAAATGCGATCGTTTTCCAAAACGAAACATCAACGGAGATAACT
GTTTTTCGGGAAAGATTTAATACAGAAAATCATGCAGAAAACTTTTCTCA
AAGATTGCATCGACTACTTTCGGAGAAAACTGTTCAGGCAGAATGTAATA
ATAAACCTTCATGAAAACGTTGAGAAAATTTATGTGGATAATCATACCTT
AAAAACATTGCCTTAAAGGATTGAtatctaaaaaacaaaaaaaacgagAG
ATACTTACAAACCGATCGACGCTGTATGAATAGAAACAAAATTAGAATAC
TAATTAAATAATATGAGAGCTTTATCATGGGGGGTTATCAGCTTTCTCAC
AAGGCAACATTTcttaattttgttaaattacACTAACCAATTGTTCATTT
GTTCATctgtatttgaaaaaaaagagaagaattAAAGTGGATTACCTTGT
TCCTAATTCTTTTTTCCCTTATTCTTCTTGGTCGATTCTGAGCTACACCC
ATCTATGTGTCAATCATCAAAAAATAGACAGATTCTTGATCAGGATAACA
TAATTATTATATCTCtatctttatttgattttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00011336-exon-sc0000127-1491911889:16822..17006 | TCONS_00011336-exon-sc0000127-1491911889:16822..17006 | Clytia hemisphaerica | exon |
TCONS_00011336-exon-sc0000127-1510915933:16822..17006 | TCONS_00011336-exon-sc0000127-1510915933:16822..17006 | Clytia hemisphaerica | exon |
TCONS_00011336-exon-sc0000127-1575043694:16822..17006 | TCONS_00011336-exon-sc0000127-1575043694:16822..17006 | Clytia hemisphaerica | exon |
TCONS_00011336-exon-sc0000127-1491911889:17194..17577 | TCONS_00011336-exon-sc0000127-1491911889:17194..17577 | Clytia hemisphaerica | exon |
TCONS_00011336-exon-sc0000127-1510915933:17194..17577 | TCONS_00011336-exon-sc0000127-1510915933:17194..17577 | Clytia hemisphaerica | exon |
TCONS_00011336-exon-sc0000127-1575043694:17194..17577 | TCONS_00011336-exon-sc0000127-1575043694:17194..17577 | Clytia hemisphaerica | exon |
TCONS_00011336-exon-sc0000127-1491911889:18959..20266 | TCONS_00011336-exon-sc0000127-1491911889:18959..20266 | Clytia hemisphaerica | exon |
TCONS_00011336-exon-sc0000127-1510915933:18959..20266 | TCONS_00011336-exon-sc0000127-1510915933:18959..20266 | Clytia hemisphaerica | exon |
TCONS_00011336-exon-sc0000127-1575043694:18959..20266 | TCONS_00011336-exon-sc0000127-1575043694:18959..20266 | Clytia hemisphaerica | exon |
TCONS_00011336-exon-sc0000127-1491911889:20591..20696 | TCONS_00011336-exon-sc0000127-1491911889:20591..20696 | Clytia hemisphaerica | exon |
TCONS_00011336-exon-sc0000127-1510915933:20591..20696 | TCONS_00011336-exon-sc0000127-1510915933:20591..20696 | Clytia hemisphaerica | exon |
TCONS_00011336-exon-sc0000127-1575043694:20591..20696 | TCONS_00011336-exon-sc0000127-1575043694:20591..20696 | Clytia hemisphaerica | exon |
TCONS_00011336-exon-sc0000127-1491911889:21754..22654 | TCONS_00011336-exon-sc0000127-1491911889:21754..22654 | Clytia hemisphaerica | exon |
TCONS_00011336-exon-sc0000127-1510915933:21754..22654 | TCONS_00011336-exon-sc0000127-1510915933:21754..22654 | Clytia hemisphaerica | exon |
TCONS_00011336-exon-sc0000127-1575043694:21754..22654 | TCONS_00011336-exon-sc0000127-1575043694:21754..22654 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000127 | supercontig | sc0000127:16822..22654 + |
Blast
BLAST of TCONS_00011336 vs. Swiss-Prot (Human)
Match: FZD2 (Frizzled-2 OS=Homo sapiens GN=FZD2 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.333e-23 Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 2
Query: 707 KCMSIADNKI---IMKGFCRNRPYNYTIMKT---KSEIEEANLVGNQFEPLFKVECSEHIQDFICSYYLPKCEA-NKPLPPCRSLCKEARKGCKELMNKFGFQWPRHLRCRHFPKRNQE 1042
K +SI D+ I C + YN TIM + E+A L +QF PL KV+CS ++ F+CS Y P C + +PPCRS+C+ AR+GC+ LMNKFGFQWP LRC HFP+ E
Sbjct: 29 KGISIPDHGFCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELRFFLCSMYAPVCTVLEQAIPPCRSICERARQGCEALMNKFGFQWPERLRCEHFPRHGAE 147 HSP 2 Score: 82.8037 bits (203), Expect = 3.253e-16 Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 2
Query: 1565 ICQQLPYSYTSIDKLKAISG---AKRMIEMFNPLYAVRCSDHLQNFICSYHFPKCE-LNKVLPPCRELCEASRNGCSLLMQKYGFQWPDQLKCDRFPK 1846
+C + Y+ T + L + A + F PL V+CS L+ F+CS + P C L + +PPCR +CE +R GC LM K+GFQWP++L+C+ FP+
Sbjct: 46 LCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELRFFLCSMYAPVCTVLEQAIPPCRSICERARQGCEALMNKFGFQWPERLRCEHFPR 143
The following BLAST results are available for this feature:
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