TCONS_00011334 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011334
Unique NameTCONS_00011334
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011334 ID=TCONS_00011334|Name=TCONS_00011334|organism=Clytia hemisphaerica|type=transcript|length=449bp
GGCGATCTTGATTGATTCTTCTCCTGTTAGACAATCATCGACATAAACAT
CTTCATTGACGATGCGATAAACTTCAGGATATTGATCTTGAAATAAGTAG
GCAATCTGACGAAGTCCTCGCTCCGCCTGATTTCCGCTGGATCTGATTCC
ATAGATTAGTGTTTTGATCACTTTTTCCATTGGTGTCTTTGATGAGTCAA
GTTCTGGGTGCCAAATATAACGCTGATAGCACCAATGGTCTGGGTTGAGG
TGGATAGTGTTGTACATCTTGCATACATCGGTATGTATGCCAATTCTATG
AGTTGACCAGCGTAGCAGTACTTCTTGCAGCTTGTTTAGATTGTTGCTTC
CTTTGGCAAGGCAGTCGTTTAAGCTGTAACCAGATGCGGTAGGGAAAGAA
GCATCAAATACAATACGACATGGTGTGCTGAGCGAAGTTGATTTCCAAA
Run BLAST on NCBI

protein sequence of TCONS_00011334-protein

>TCONS_00011334-protein ID=TCONS_00011334-protein|Name=TCONS_00011334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
WKSTSLSTPCRIVFDASFPTASGYSLNDCLAKGSNNLNKLQEVLLRWSTH
RIGIHTDVCKMYNTIHLNPDHWCYQRYIWHPELDSSKTPMEKVIKTLIYG
IRSSGNQAERGLRQIAYLFQDQYPEVYRIVNEDVYVDDCLTGEESIKIA
Run BLAST on NCBI

transcript from alignment at sc0000124:551405..551853

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011334 ID=TCONS_00011334|Name=TCONS_00011334|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at sc0000124:551405..551853 (Clytia hemisphaerica)
TTTGGAAATCAACTTCGCTCAGCACACCATGTCGTATTGTATTTGATGCT
TCTTTCCCTACCGCATCTGGTTACAGCTTAAACGACTGCCTTGCCAAAGG
AAGCAACAATCTAAACAAGCTGCAAGAAGTACTGCTACGCTGGTCAACTC
ATAGAATTGGCATACATACCGATGTATGCAAGATGTACAACACTATCCAC
CTCAACCCAGACCATTGGTGCTATCAGCGTTATATTTGGCACCCAGAACT
TGACTCATCAAAGACACCAATGGAAAAAGTGATCAAAACACTAATCTATG
GAATCAGATCCAGCGGAAATCAGGCGGAGCGAGGACTTCGTCAGATTGCC
TACTTATTTCAAGATCAATATCCTGAAGTTTATCGCATCGTCAATGAAGA
TGTTTATGTCGATGATTGTCTAACAGGAGAAGAATCAATCAAGATCGCC

Coding sequence (CDS) from alignment at sc0000124:551405..551853

>TCONS_00011334 ID=TCONS_00011334|Name=TCONS_00011334|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0000124:551405..551853 (Clytia hemisphaerica)
TGGAAATCAACTTCGCTCAGCACACCATGTCGTATTGTATTTGATGCTTC
TTTCCCTACCGCATCTGGTTACAGCTTAAACGACTGCCTTGCCAAAGGAA
GCAACAATCTAAACAAGCTGCAAGAAGTACTGCTACGCTGGTCAACTCAT
AGAATTGGCATACATACCGATGTATGCAAGATGTACAACACTATCCACCT
CAACCCAGACCATTGGTGCTATCAGCGTTATATTTGGCACCCAGAACTTG
ACTCATCAAAGACACCAATGGAAAAAGTGATCAAAACACTAATCTATGGA
ATCAGATCCAGCGGAAATCAGGCGGAGCGAGGACTTCGTCAGATTGCCTA
CTTATTTCAAGATCAATATCCTGAAGTTTATCGCATCGTCAATGAAGATG
TTTATGTCGATGATTGTCTAACAGGAGAAGAATCAATCAAGATCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006355XLOC_006355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011334-exon-sc0000124-1491911889:551405..551853TCONS_00011334-exon-sc0000124-1491911889:551405..551853Clytia hemisphaericaexon
TCONS_00011334-exon-sc0000124-1510915933:551405..551853TCONS_00011334-exon-sc0000124-1510915933:551405..551853Clytia hemisphaericaexon
TCONS_00011334-exon-sc0000124-1575043694:551405..551853TCONS_00011334-exon-sc0000124-1575043694:551405..551853Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011334-proteinTCONS_00011334-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000124supercontigsc0000124:551405..551853 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.61731	4.1804	3.34748	3.27498	3.78763	3.62315	2.09056	2.84677	2.7405	4.47464	1.34789	1.47675	2.45783	1.83778	2.09848	1.71152	2.44136	1.70612	2.67138	6.413	3.14434	3.13711	1.35594	2.1573	3.80909	3.82446	3.04044	3.02852	7.38329	4.01195
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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