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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011333 ID=TCONS_00011333|Name=TCONS_00011333|organism=Clytia hemisphaerica|type=transcript|length=2136bp
CTGTACTGTAGTCCATTGTTATAATACAATAGTTATATACTTAGCAAATC
CAGTCTTAGCAACCAAGtcaataaggaactcgataaagaactttgaggct
gaaattatctggaaaaataaggttccttataaaaaaaaacgtgtattctg
cAAAATGTGCACAATGCACAAGAATCCATATAGACTCCGAATGCTTTATA
AGGGTGATGTTTTGGAGCCAAAGATGAAGTTTTCATGAACTCATAAGGGT
GGCCTTCACATTAATTTGTGATATTGGtcacacattttcaattttgattc
gATTTATGAAACAGCcctatgaattttttttagttCTTGATCAGTCTGGC
ATTGTTCATTGAATACATACTAAACATTATCTAAGTCATTTGAGTCGAGA
TGTTTTCAATGTTTTCACATTATCTGGCAAGACGATCCGGCACCATCAAC
ACTTTCAGTACTACATTCCTCGAAGACGAAATATTTCCGAAGAGTTATTG
GTGGATTTTGATCAATATCTTTCATGATACGTTCAAGACGTCCCTTCATA
TTCGAGATAGTGGAGCGGTTTAAATCTTGCAATAAATTACATTCCTGGTC
GTGGAACAATGGAATTTTACCGTCACTCAAATATTGAAGTAACCTTTTTA
GACATTCAATGTAAAGAGTATCCAGATTTCTATCAAGCCAGCGTTGGTTA
TCCAAAACAAGCATAACCAGTGTTTTCAGATAATAACTGGAGAGCTTTTT
CCATGGTGAACCTTGCATGTCTCGAAACCTCTTAAGAAGCTTGACAACTT
TCTTAGCACAGCTTTGGTCATGAAAAATCCGGCGTTCCCTGTCTGGATAA
GATAATCGCCATAGATACTTAGATTGACGAGGGTACGGTTTTGGAACTAA
AACCACTGATGATGAACTGAGTTGAAACACAGGGACAAGATCCACATCAA
TAAACATACCAGAATCAGATACAACCTTCAACGTATAAGCCGGACCAGCT
TTATGATAACTAAAAGAAACCTTTTCTCCATTTCCGACAGAGATCTTACT
ACTCCACCAAGACGTGTATTTCGCATTAACTTTATCAGTAGTTTTATACA
CAATCCCCTGAAACCAACTGCTCAATTGTTGCGGTAAAAGGACGTATCTG
TATTCGCAAAATCCAGGTATTACACCAGAATAGTGAAAAGATTCGAAGAA
CGATCTCAAAAATTTGTAATCGCTATACCGGGGATGTGTGCTCGGCATGA
GTTGGTCAAACGTCTTTTTAGTGCAGTAAACAGCGGACCCAGGGACAACA
TTGAAGATAAGAGCATCCTCATGAGAAGTTGTAACGAGATCAAAATCACC
TCCGTAAAATGGTAAATTAAAAACGACGTTCAAATCAAACTCTGTTGCTG
CACCAACTCTTAAACCATCATAAAATGAGCCTGAATAATAGATGTCTTGG
TAAATGGCCTCACTCAATTCACGCATTTCAGGGAAAAATTTATTCCCAAC
AAAATCCGTTAAGATCCCTTTGGCGCGTGCGGTGGCTGCGTCATCCATGG
CAATTGTTTCGACATAAACGTCGTTCAAAACTCTCATCATTGTATAAGAT
TCTGCCATTTCAaggaataatttttttgacaagTGCGTGGTTTACAGTTA
GGTGTGTATGATTAGTTCCTCTACagttttttgtagatttttcacagGTT
TTGAGGGAactcaaattttagtataatAGCGCTATTATGTGAGCAGCTAG
CAGAACTACTGGTGAAGGTATCTTCTATATAACAAGTTCACTACAATAGA
ATCTTCAGGAAAATGGTCCAGTCCAAAATGTGAGCAAGGTTAAAATATTA
TAGAAGCAAACTTCACGTGTTTACGATTGTACTGTATTCAGTTCCTCTTT
AGAACActtgtcaaatgtttttcacAAATAGTATGGAGAACACCAGTATG
ATAACTCTTTGATGCAAGCCAGAGGAATTATTGAAACCAATGGAACACAA
AATGAAGCTTTGGATGGCAATTTACATACGGTAGAATTTCCATGAGAATC
CAGGCCAGAATGCAGTATTGATAGAGTGAATATTTAATGATAAATTGATA
TGTAGCAACACGCAATATAGTGTTCCTGTTAACAGC Run BLAST on NCBI protein sequence of TCONS_00011333-protein >TCONS_00011333-protein ID=TCONS_00011333-protein|Name=TCONS_00011333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp
MAESYTMMRVLNDVYVETIAMDDAATARAKGILTDFVGNKFFPEMRELSE
AIYQDIYYSGSFYDGLRVGAATEFDLNVVFNLPFYGGDFDLVTTSHEDAL
IFNVVPGSAVYCTKKTFDQLMPSTHPRYSDYKFLRSFFESFHYSGVIPGF
CEYRYVLLPQQLSSWFQGIVYKTTDKVNAKYTSWWSSKISVGNGEKVSFS
YHKAGPAYTLKVVSDSGMFIDVDLVPVFQLSSSSVVLVPKPYPRQSKYLW
RLSYPDRERRIFHDQSCAKKVVKLLKRFRDMQGSPWKKLSSYYLKTLVML
VLDNQRWLDRNLDTLYIECLKRLLQYLSDGKIPLFHDQECNLLQDLNRST
ISNMKGRLERIMKDIDQNPPITLRKYFVFEECSTESVDGAGSSCQIM Run BLAST on NCBI transcript from alignment at sc0000124:530672..532807 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011333 ID=TCONS_00011333|Name=TCONS_00011333|organism=Clytia hemisphaerica|type=transcript|length=2136bp|location=Sequence derived from alignment at sc0000124:530672..532807 (Clytia hemisphaerica)
GCTGTTAACAGGAACACTATATTGCGTGTTGCTACATATCAATTTATCAT
TAAATATTCACTCTATCAATACTGCATTCTGGCCTGGATTCTCATGGAAA
TTCTACCGTATGTAAATTGCCATCCAAAGCTTCATTTTGTGTTCCATTGG
TTTCAATAATTCCTCTGGCTTGCATCAAAGAGTTATCATACTGGTGTTCT
CCATACTATTTgtgaaaaacatttgacaagTGTTCTAAAGAGGAACTGAA
TACAGTACAATCGTAAACACGTGAAGTTTGCTTCTATAATATTTTAACCT
TGCTCACATTTTGGACTGGACCATTTTCCTGAAGATTCTATTGTAGTGAA
CTTGTTATATAGAAGATACCTTCACCAGTAGTTCTGCTAGCTGCTCACAT
AATAGCGCTattatactaaaatttgagtTCCCTCAAAACctgtgaaaaat
ctacaaaaaactGTAGAGGAACTAATCATACACACCTAACTGTAAACCAC
GCActtgtcaaaaaaattattcctTGAAATGGCAGAATCTTATACAATGA
TGAGAGTTTTGAACGACGTTTATGTCGAAACAATTGCCATGGATGACGCA
GCCACCGCACGCGCCAAAGGGATCTTAACGGATTTTGTTGGGAATAAATT
TTTCCCTGAAATGCGTGAATTGAGTGAGGCCATTTACCAAGACATCTATT
ATTCAGGCTCATTTTATGATGGTTTAAGAGTTGGTGCAGCAACAGAGTTT
GATTTGAACGTCGTTTTTAATTTACCATTTTACGGAGGTGATTTTGATCT
CGTTACAACTTCTCATGAGGATGCTCTTATCTTCAATGTTGTCCCTGGGT
CCGCTGTTTACTGCACTAAAAAGACGTTTGACCAACTCATGCCGAGCACA
CATCCCCGGTATAGCGATTACAAATTTTTGAGATCGTTCTTCGAATCTTT
TCACTATTCTGGTGTAATACCTGGATTTTGCGAATACAGATACGTCCTTT
TACCGCAACAATTGAGCAGTTGGTTTCAGGGGATTGTGTATAAAACTACT
GATAAAGTTAATGCGAAATACACGTCTTGGTGGAGTAGTAAGATCTCTGT
CGGAAATGGAGAAAAGGTTTCTTTTAGTTATCATAAAGCTGGTCCGGCTT
ATACGTTGAAGGTTGTATCTGATTCTGGTATGTTTATTGATGTGGATCTT
GTCCCTGTGTTTCAACTCAGTTCATCATCAGTGGTTTTAGTTCCAAAACC
GTACCCTCGTCAATCTAAGTATCTATGGCGATTATCTTATCCAGACAGGG
AACGCCGGATTTTTCATGACCAAAGCTGTGCTAAGAAAGTTGTCAAGCTT
CTTAAGAGGTTTCGAGACATGCAAGGTTCACCATGGAAAAAGCTCTCCAG
TTATTATCTGAAAACACTGGTTATGCTTGTTTTGGATAACCAACGCTGGC
TTGATAGAAATCTGGATACTCTTTACATTGAATGTCTAAAAAGGTTACTT
CAATATTTGAGTGACGGTAAAATTCCATTGTTCCACGACCAGGAATGTAA
TTTATTGCAAGATTTAAACCGCTCCACTATCTCGAATATGAAGGGACGTC
TTGAACGTATCATGAAAGATATTGATCAAAATCCACCAATAACTCTTCGG
AAATATTTCGTCTTCGAGGAATGTAGTACTGAAAGTGTTGATGGTGCCGG
ATCGTCTTGCCAGATAATGTGAAAACATTGAAAACATCTCGACTCAAATG
ACTTAGATAATGTTTAGTATGTATTCAATGAACAATGCCAGACTGATCAA
GaactaaaaaaaattcataggGCTGTTTCATAAATcgaatcaaaattgaa
aatgtgtgaCCAATATCACAAATTAATGTGAAGGCCACCCTTATGAGTTC
ATGAAAACTTCATCTTTGGCTCCAAAACATCACCCTTATAAAGCATTCGG
AGTCTATATGGATTCTTGTGCATTGTGCACATTTTgcagaatacacgttt
ttttttataaggaaccttatttttccagataatttcagcctcaaagttct
ttatcgagttccttattgaCTTGGTTGCTAAGACTGGATTTGCTAAGTAT
ATAACTATTGTATTATAACAATGGACTACAGTACAG Coding sequence (CDS) from alignment at sc0000124:530672..532807 >TCONS_00011333 ID=TCONS_00011333|Name=TCONS_00011333|organism=Clytia hemisphaerica|type=CDS|length=1194bp|location=Sequence derived from alignment at sc0000124:530672..532807 (Clytia hemisphaerica)
ATGGCAGAATCTTATACAATGATGAGAGTTTTGAACGACGTTTATGTCGA
AACAATTGCCATGGATGACGCAGCCACCGCACGCGCCAAAGGGATCTTAA
CGGATTTTGTTGGGAATAAATTTTTCCCTGAAATGCGTGAATTGAGTGAG
GCCATTTACCAAGACATCTATTATTCAGGCTCATTTTATGATGGTTTAAG
AGTTGGTGCAGCAACAGAGTTTGATTTGAACGTCGTTTTTAATTTACCAT
TTTACGGAGGTGATTTTGATCTCGTTACAACTTCTCATGAGGATGCTCTT
ATCTTCAATGTTGTCCCTGGGTCCGCTGTTTACTGCACTAAAAAGACGTT
TGACCAACTCATGCCGAGCACACATCCCCGGTATAGCGATTACAAATTTT
TGAGATCGTTCTTCGAATCTTTTCACTATTCTGGTGTAATACCTGGATTT
TGCGAATACAGATACGTCCTTTTACCGCAACAATTGAGCAGTTGGTTTCA
GGGGATTGTGTATAAAACTACTGATAAAGTTAATGCGAAATACACGTCTT
GGTGGAGTAGTAAGATCTCTGTCGGAAATGGAGAAAAGGTTTCTTTTAGT
TATCATAAAGCTGGTCCGGCTTATACGTTGAAGGTTGTATCTGATTCTGG
TATGTTTATTGATGTGGATCTTGTCCCTGTGTTTCAACTCAGTTCATCAT
CAGTGGTTTTAGTTCCAAAACCGTACCCTCGTCAATCTAAGTATCTATGG
CGATTATCTTATCCAGACAGGGAACGCCGGATTTTTCATGACCAAAGCTG
TGCTAAGAAAGTTGTCAAGCTTCTTAAGAGGTTTCGAGACATGCAAGGTT
CACCATGGAAAAAGCTCTCCAGTTATTATCTGAAAACACTGGTTATGCTT
GTTTTGGATAACCAACGCTGGCTTGATAGAAATCTGGATACTCTTTACAT
TGAATGTCTAAAAAGGTTACTTCAATATTTGAGTGACGGTAAAATTCCAT
TGTTCCACGACCAGGAATGTAATTTATTGCAAGATTTAAACCGCTCCACT
ATCTCGAATATGAAGGGACGTCTTGAACGTATCATGAAAGATATTGATCA
AAATCCACCAATAACTCTTCGGAAATATTTCGTCTTCGAGGAATGTAGTA
CTGAAAGTGTTGATGGTGCCGGATCGTCTTGCCAGATAATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011333-exon-sc0000124-1491911889:530672..532807 | TCONS_00011333-exon-sc0000124-1491911889:530672..532807 | Clytia hemisphaerica | exon |
| TCONS_00011333-exon-sc0000124-1510915933:530672..532807 | TCONS_00011333-exon-sc0000124-1510915933:530672..532807 | Clytia hemisphaerica | exon |
| TCONS_00011333-exon-sc0000124-1575043694:530672..532807 | TCONS_00011333-exon-sc0000124-1575043694:530672..532807 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000124 | supercontig | sc0000124:530672..532807 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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