TCONS_00011330 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011330
Unique NameTCONS_00011330
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011330 ID=TCONS_00011330|Name=TCONS_00011330|organism=Clytia hemisphaerica|type=transcript|length=829bp
CTTGGCACATGAAGCTAATGTATCTTTATCTGCCCATTTAGGCCATATCT
CTCCCAAGATAGTCATAAAAACCTCACGATTTATGTTTTGCATGGGATTA
AAAAGGGATTCTTTAGCTTTTTGATATTCATGGTGAAGATTTTTGTTGAC
TTGATCAAGTAGCTGGGTTACACCAGTCCTATCTGGAGGTGATATTAATA
ACCAAATCTTTTTCGAAAGATCATAGTCAAATCTGGAGCTGTGATCATCA
GAGAGTAGAACCACCAGGCCTTTGTATCCCCCTCTCTGCTAGGTAAGAAT
CGAACTCTTCACAAGCATCTTTGAATGTTTTGCCATCTGAAACCCCACTT
TCTGAACATATTGTAGACAATGCAGTTTCCAAAATCATTTCAACACGATT
AGAAAAACATGTAAGCCttaatttttacatacaaaACACCTAtatgaaat
acaaaatcaattgtCAAAAAGTTTCAGGTAGAAATATAACGAGAGGCACA
TCTATTGTGGGTTCTGTGGTGTAATAGGTAATTCTATTGAGACTAACTTA
TCAAAATATGAATAGTTCTAAAACAAACTTACCTAGATGTAAAGGTGCAA
AATTTTACCTTGATTGACCCAGTGGATTTAAAGATATCGTCAATAGTATA
Aatgtgggttttgaggtacgtattcaaaaaaagtgaaaattttaaaaagc
aatgacataaaaacaatctaacatataacattgaaaaatatCAGGAAGAA
CTCTTTTCATGGGACTCCTCGCACCATCAAACAAGTTTCTTGATAAAGGC
AGCCCAAAATATAATTATTTAGATCAGAA
Run BLAST on NCBI

transcript from alignment at sc0000124:509242..510070

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011330 ID=TCONS_00011330|Name=TCONS_00011330|organism=Clytia hemisphaerica|type=transcript|length=829bp|location=Sequence derived from alignment at sc0000124:509242..510070 (Clytia hemisphaerica)
TTCTGATCTAAATAATTATATTTTGGGCTGCCTTTATCAAGAAACTTGTT
TGATGGTGCGAGGAGTCCCATGAAAAGAGTTCTTCCTGatatttttcaat
gttatatgttagattgtttttatgtcattgctttttaaaattttcacttt
ttttgaatacgtacctcaaaacccacatTTATACTATTGACGATATCTTT
AAATCCACTGGGTCAATCAAGGTAAAATTTTGCACCTTTACATCTAGGTA
AGTTTGTTTTAGAACTATTCATATTTTGATAAGTTAGTCTCAATAGAATT
ACCTATTACACCACAGAACCCACAATAGATGTGCCTCTCGTTATATTTCT
ACCTGAAACTTTTTGacaattgattttgtatttcataTAGGTGTtttgta
tgtaaaaattaaGGCTTACATGTTTTTCTAATCGTGTTGAAATGATTTTG
GAAACTGCATTGTCTACAATATGTTCAGAAAGTGGGGTTTCAGATGGCAA
AACATTCAAAGATGCTTGTGAAGAGTTCGATTCTTACCTAGCAGAGAGGG
GGATACAAAGGCCTGGTGGTTCTACTCTCTGATGATCACAGCTCCAGATT
TGACTATGATCTTTCGAAAAAGATTTGGTTATTAATATCACCTCCAGATA
GGACTGGTGTAACCCAGCTACTTGATCAAGTCAACAAAAATCTTCACCAT
GAATATCAAAAAGCTAAAGAATCCCTTTTTAATCCCATGCAAAACATAAA
TCGTGAGGTTTTTATGACTATCTTGGGAGAGATATGGCCTAAATGGGCAG
ATAAAGATACATTAGCTTCATGTGCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006351XLOC_006351Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011330-exon-sc0000124-1491911889:509242..510070TCONS_00011330-exon-sc0000124-1491911889:509242..510070Clytia hemisphaericaexon
TCONS_00011330-exon-sc0000124-1510915933:509242..510070TCONS_00011330-exon-sc0000124-1510915933:509242..510070Clytia hemisphaericaexon
TCONS_00011330-exon-sc0000124-1575043694:509242..510070TCONS_00011330-exon-sc0000124-1575043694:509242..510070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000124supercontigsc0000124:509242..510070 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.124754	0.192831	0.204078	0.131803	0.708208	0.499887	0.481225	0.556791	0.39183	0.313563	0.431983	0.378407	0.0834472	0.26532	0.0974779	0.0697392	0	0.137161	0	0.0775808	0.126315	0.172776	0	0.153627	0.255459	0.344067	0.0892699	0	0	0.0695285
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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