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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011326 ID=TCONS_00011326|Name=TCONS_00011326|organism=Clytia hemisphaerica|type=transcript|length=1597bp
NNCTATACCGTCACATGGAGACTTTCCATGACTGGTGGCAAAGAAGATCC
ACTCTGCATCAATTCCAAAATCCTCTTGATGGTGGCAGAGATtcataaaa
tttttataattcttaTACTGGCCTGCACATCCATCTGAGAAATAATAAAG
CTTGCTAATTCGAGGaaggttttctttcaaatattctaCAACCAATGTTT
GAACTTTATAAACAAAATTAGTGTCGTGGGTGTTATCATTGGAAATGAAA
CAGAATGATTTGTGTTTGAGTGTTCCTTCACTCTGATAATAGACAACAAC
TGGATGTAAAGTACAGTATTCCTTGCTCCAGTGGTAGCTCTGAATTTCGT
CTTGTATTAAAAATTGATAGTTCTCTGCGAAATCACCAAGAACAATAGCT
TCGTTTGGCAAAAGAGACTCTTTCTTTGCTTTAAGAAATTTGGCTTGACA
TTTAGTGACGAATGAGTGTTTAGTAAGCTCATCTATGTCTTTACACAAAG
TATCAACATAGTCATTACAATTGGTTGTAATTGTCTGTAAACTTGCTCTA
TCAGTTGTATCCCACTGCATATAATGAAACTCTTCCtcttcatcaaaatc
tttgagtttttctttcacaaaaactttcaaagctTCAACTCCAGGACAAT
TTTCACAACGGTGCATCATGCATATTCTATTGGTAGAGTCACAAACAACT
TTATTGACTAAATCTTTGTAAGTTATATCCCACTGAATTGCGTCAACAAG
CAAAACAGCATTTTGATGTATGGAACATACACAAACTGAATGAGTCCCAG
ACTTTCCAGCAATTATGCAAGACTTAGGTCTCAATGcacaaaatttagaa
aagccTACCTTGATGTCAGGGTTTTGCATCTTGAATGCTGCATAAAGTTC
ACGCAAGTTACATAAGACAAGACGTTTTTGTTCATGTACATTTTTTCGTA
TGCTTACGCAGTCTTTTTTACCTGGCATTTGTCTACTATTCTCAtcactt
ttataaaaattctcGATGTCAATAATATGCTCCTGAGGTAttgttttccc
tttttttagGTAATGGTGTGGCAAGTATACCAGAATCCCTTTTTAAATCC
CTTGCTTTTCGTACTAGATATTCAGAAACATCAAAGTATTTCGAACAATA
CTCTCTGGACCAGCTATCAGGCGCAAGTGTTAGTAATTGTACCTTTTCAG
GGTATGAACTGATAAGTAACTTTTCTTTGATAGCAGTGCACAGTTTATCA
AATTCGTCTGCCTTCTTATCAATTGTCTCCCTTTTATCATTATTTGAAGG
TTCACTGTCCTTTAATTCTTCCATTGGGAAGTTGTAAACAGTGGATATTG
ACTCTTCAAATTTACTCATTacagttttaagtttttcttttgctCTATTC
ACTCTCGAATGTGGCGGAAGAGAATGAAGATTTACTGGAGATACTCCGAC
TGATTCAAAGCTCGAATTTAACCTTTTCCTTGGTGATTCTTCATACTCAA
CATGTTCATCCTcagtttcattttgactttccCCTTCAGTTTCTGTTTCT
GTATCCATTTTTTCAGGCTCTACATTAGCTCGTGAAATGATTTCCTG Run BLAST on NCBI protein sequence of TCONS_00011326-protein >TCONS_00011326-protein ID=TCONS_00011326-protein|Name=TCONS_00011326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MPGKKDCVSIRKNVHEQKRLVLCNLRELYAAFKMQNPDIKVGFSKFCALR
PKSCIIAGKSGTHSVCVCSIHQNAVLLVDAIQWDITYKDLVNKVVCDSTN
RICMMHRCENCPGVEALKVFVKEKLKDFDEEEEFHYMQWDTTDRASLQTI
TTNCNDYVDTLCKDIDELTKHSFVTKCQAKFLKAKKESLLPNEAIVLGDF
AENYQFLIQDEIQSYHWSKEYCTLHPVVVYYQSEGTLKHKSFCFISNDNT
HDTNFVYKVQTLVVEYLKENLPRISKLYYFSDGCAGQYKNYKNFMNLCHH
QEDFGIDAEWIFFATSHGKSPCDGIX Run BLAST on NCBI transcript from alignment at sc0000124:167290..168886 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011326 ID=TCONS_00011326|Name=TCONS_00011326|organism=Clytia hemisphaerica|type=transcript|length=1597bp|location=Sequence derived from alignment at sc0000124:167290..168886 (Clytia hemisphaerica)
CAGGAAATCATTTCACGAGCTAATGTAGAGCCTGAAAAAATGGATACAGA
AACAGAAACTGAAGGggaaagtcaaaatgaaactgAGGATGAACATGTTG
AGTATGAAGAATCACCAAGGAAAAGGTTAAATTCGAGCTTTGAATCAGTC
GGAGTATCTCCAGTAAATCTTCATTCTCTTCCGCCACATTCGAGAGTGAA
TAGagcaaaagaaaaacttaaaactgtAATGAGTAAATTTGAAGAGTCAA
TATCCACTGTTTACAACTTCCCAATGGAAGAATTAAAGGACAGTGAACCT
TCAAATAATGATAAAAGGGAGACAATTGATAAGAAGGCAGACGAATTTGA
TAAACTGTGCACTGCTATCAAAGAAAAGTTACTTATCAGTTCATACCCTG
AAAAGGTACAATTACTAACACTTGCGCCTGATAGCTGGTCCAGAGAGTAT
TGTTCGAAATACTTTGATGTTTCTGAATATCTAGTACGAAAAGCAAGGGA
TTTAAAAAGGGATTCTGGTATACTTGCCACACCATTACctaaaaaaaggg
aaaacaaTACCTCAGGAGCATATTATTGACATCgagaatttttataaaag
tgaTGAGAATAGTAGACAAATGCCAGGTAAAAAAGACTGCGTAAGCATAC
GAAAAAATGTACATGAACAAAAACGTCTTGTCTTATGTAACTTGCGTGAA
CTTTATGCAGCATTCAAGATGCAAAACCCTGACATCAAGGTAggcttttc
taaattttgtgCATTGAGACCTAAGTCTTGCATAATTGCTGGAAAGTCTG
GGACTCATTCAGTTTGTGTATGTTCCATACATCAAAATGCTGTTTTGCTT
GTTGACGCAATTCAGTGGGATATAACTTACAAAGATTTAGTCAATAAAGT
TGTTTGTGACTCTACCAATAGAATATGCATGATGCACCGTTGTGAAAATT
GTCCTGGAGTTGAagctttgaaagtttttgtgaaagaaaaactcaaagat
tttgatgaagaGGAAGAGTTTCATTATATGCAGTGGGATACAACTGATAG
AGCAAGTTTACAGACAATTACAACCAATTGTAATGACTATGTTGATACTT
TGTGTAAAGACATAGATGAGCTTACTAAACACTCATTCGTCACTAAATGT
CAAGCCAAATTTCTTAAAGCAAAGAAAGAGTCTCTTTTGCCAAACGAAGC
TATTGTTCTTGGTGATTTCGCAGAGAACTATCAATTTTTAATACAAGACG
AAATTCAGAGCTACCACTGGAGCAAGGAATACTGTACTTTACATCCAGTT
GTTGTCTATTATCAGAGTGAAGGAACACTCAAACACAAATCATTCTGTTT
CATTTCCAATGATAACACCCACGACACTAATTTTGTTTATAAAGTTCAAA
CATTGGTTGtagaatatttgaaagaaaaccttCCTCGAATTAGCAAGCTT
TATTATTTCTCAGATGGATGTGCAGGCCAGTAtaagaattataaaaattt
tatgaATCTCTGCCACCATCAAGAGGATTTTGGAATTGATGCAGAGTGGA
TCTTCTTTGCCACCAGTCATGGAAAGTCTCCATGTGACGGTATAGNN Coding sequence (CDS) from alignment at sc0000124:167290..168886 >TCONS_00011326 ID=TCONS_00011326|Name=TCONS_00011326|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at sc0000124:167290..168886 (Clytia hemisphaerica)
ATGCCAGGTAAAAAAGACTGCGTAAGCATACGAAAAAATGTACATGAACA
AAAACGTCTTGTCTTATGTAACTTGCGTGAACTTTATGCAGCATTCAAGA
TGCAAAACCCTGACATCAAGGTAggcttttctaaattttgtgCATTGAGA
CCTAAGTCTTGCATAATTGCTGGAAAGTCTGGGACTCATTCAGTTTGTGT
ATGTTCCATACATCAAAATGCTGTTTTGCTTGTTGACGCAATTCAGTGGG
ATATAACTTACAAAGATTTAGTCAATAAAGTTGTTTGTGACTCTACCAAT
AGAATATGCATGATGCACCGTTGTGAAAATTGTCCTGGAGTTGAagcttt
gaaagtttttgtgaaagaaaaactcaaagattttgatgaagaGGAAGAGT
TTCATTATATGCAGTGGGATACAACTGATAGAGCAAGTTTACAGACAATT
ACAACCAATTGTAATGACTATGTTGATACTTTGTGTAAAGACATAGATGA
GCTTACTAAACACTCATTCGTCACTAAATGTCAAGCCAAATTTCTTAAAG
CAAAGAAAGAGTCTCTTTTGCCAAACGAAGCTATTGTTCTTGGTGATTTC
GCAGAGAACTATCAATTTTTAATACAAGACGAAATTCAGAGCTACCACTG
GAGCAAGGAATACTGTACTTTACATCCAGTTGTTGTCTATTATCAGAGTG
AAGGAACACTCAAACACAAATCATTCTGTTTCATTTCCAATGATAACACC
CACGACACTAATTTTGTTTATAAAGTTCAAACATTGGTTGtagaatattt
gaaagaaaaccttCCTCGAATTAGCAAGCTTTATTATTTCTCAGATGGAT
GTGCAGGCCAGTAtaagaattataaaaattttatgaATCTCTGCCACCAT
CAAGAGGATTTTGGAATTGATGCAGAGTGGATCTTCTTTGCCACCAGTCA
TGGAAAGTCTCCATGTGACGGTATAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011326-exon-sc0000124-1491911889:167290..168886 | TCONS_00011326-exon-sc0000124-1491911889:167290..168886 | Clytia hemisphaerica | exon |
| TCONS_00011326-exon-sc0000124-1510915933:167290..168886 | TCONS_00011326-exon-sc0000124-1510915933:167290..168886 | Clytia hemisphaerica | exon |
| TCONS_00011326-exon-sc0000124-1575043694:167290..168886 | TCONS_00011326-exon-sc0000124-1575043694:167290..168886 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000124 | supercontig | sc0000124:167290..168886 . |
Blast
The following BLAST results are available for this feature:
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