|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011315 ID=TCONS_00011315|Name=TCONS_00011315|organism=Clytia hemisphaerica|type=transcript|length=1946bpRun BLAST on NCBI protein sequence of TCONS_00011315-protein >TCONS_00011315-protein ID=TCONS_00011315-protein|Name=TCONS_00011315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp MAAVTAGRRFLKSVVRDKSLLTTRCLSTSLSQAATQQLTVRDALNMAMEERun BLAST on NCBI transcript from alignment at sc0000124:484949..507262- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011315 ID=TCONS_00011315|Name=TCONS_00011315|organism=Clytia hemisphaerica|type=transcript|length=22314bp|location=Sequence derived from alignment at sc0000124:484949..507262- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000124:484949..507262- >TCONS_00011315 ID=TCONS_00011315|Name=TCONS_00011315|organism=Clytia hemisphaerica|type=CDS|length=15288bp|location=Sequence derived from alignment at sc0000124:484949..507262- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011315 vs. Swiss-Prot (Human)
Match: ODPB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3) HSP 1 Score: 491.115 bits (1263), Expect = 6.551e-169 Identity = 226/329 (68.69%), Postives = 276/329 (83.89%), Query Frame = 2
Query: 158 ATQQLTVRDALNMAMEEEITRDDRVFLLGEEVAQYDGAYKVSRGLWKKHGEKRIVDTPISEIGFAGIATGAAMAGLRPICEFMTFNFAMQAIDHIINSAAKTFYMSAGEVNVPIVFRGPNGASAGVAAQHSQCYAAWYGHVPGLKVISPWSAEDCKGLLKAAIRDNDPVVFLENEIMYGRSFEVDDKVMDPDFILPIGKAKVEREGTDVTIVAHSLGVQKAMESAEILEKEGINCEIVNLRTIRPLDKDAIIKSVKKTNRLITVEGGFPQYGVGAEVCAVVMESEAFDHLDAPIYRVTGADIPTPYANNLEVLSLPQPENVIRTIRKVL 1144
A Q+TVRDA+N M+EE+ RD++VFLLGEEVAQYDGAYKVSRGLWKK+G+KRI+DTPISE+GFAGIA GAAMAGLRPICEFMTFNF+MQAID +INSAAKT+YMS G VPIVFRGPNGASAGVAAQHSQC+AAWYGH PGLKV+SPW++ED KGL+K+AIRDN+PVV LENE+MYG FE + DF++PIGKAK+ER+GT +T+V+HS V +E+A +L KEG+ CE++N+RTIRP+D + I SV KTN L+TVEGG+PQ+GVGAE+CA +ME AF+ LDAP RVTGAD+P PYA LE S+PQ +++I I+K L
Sbjct: 29 AALQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTL 357 The following BLAST results are available for this feature:
BLAST of TCONS_00011315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.