TCONS_00011299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011299
Unique NameTCONS_00011299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011299 ID=TCONS_00011299|Name=TCONS_00011299|organism=Clytia hemisphaerica|type=transcript|length=2245bp
TTTGCCGTGTGGCTTCGAGTTATGAGGACTCAATCATTTATGTACATTTt
aattgtttgaattttttttatttcagaaaagaagaaagcaaagacaatta
tcaaaatatattgtTAAATTATTTAGGTATGAACGCAATGTTAAGAAATA
TGAGGACAGGCAATTACATTAAAgttcacatgaaaaaattgtTCATTGTT
TGCCTTTTGGTGATTTTCACAATTGGCGTCACATTGAACACTTATCTTAA
TAACATAGAAATGGAGCACGCCATACGTACTATGATAATACAACGTTATT
ACCAGCGGCTCCAAATGCGACGCCATTCTTCATCGTCAGGTTTGGAGAGC
CGCGAGAAACCTGGATCAGTATGTAAGATACCTGATTTAAATCCATTTGG
AGTTGAAAGATTGAAAGCCTGGGTTTTGAAAGAGAAACAATATTGTACCG
TGCAGAAATTTGGTAAAATTGTTGATAATTTCTTTGAAGTTGATAACAAT
GCTGGGGAAATCAAAAATGTCGAAATAAGTTATGTGATTAGAGGTCGAAG
AAGAACAAAAGATGGTAAATTAGATCCTCCAAAAGTATTTACAAGACACA
TGGACAAACAGTTTGACTATTACCAAGTATTAAATGATGATTTTCACATC
CATTTTTCACCAAATCATATATTGGAATATTCagagaaattgaaaaagtt
taaaTCTAATCTGTTGGAGggagatttctttcaagctaTGATAACGAAAA
TGAGTGGTATCAAAGTTAGAGAATACCATGCCACTATATCTAATCGTTCA
CTTGTATGTCAAAAACATGGCCGTGAATTGAATCCGAAATTCGATTCGGG
GAAATTGAAATCCGATAATCGGGAAAAATCGGGATTACCTTACAATATAC
ATATGGTGATGCTGGATGCTATATCAAATGCAAATATGTATCGACAATTA
CCAAAGtttatggaaattttagaaGATGATGAAAATGCGATGATATTCAA
AGGTCATGGAATACACGGGGATGGTACAACTTGCCAACTGATGGCTACTT
TAGCTGGCTATATGTACAGACAAGAGGACAGTAACCCTTGGCAACTACCA
AACAATAACAGCTGTGATTCGATACCActtatttttaaagatttcaatAA
AGCAGGTTACACCACTCTTTATAATGAAGATTTCATTGATGGCAGTACAT
TCCACTACAAAATGAATGGCTTTGATAAACCACCTGTTGACTGGTACCCA
AGACCTTATTGGATTGCCGCCCATGAATGGGATGAAGACATATACAACTT
CTTCAAAGCTAAGGAGAGAATCAACAATACAATTTTAATTCTGTTTTCGG
ACCATGGCGCTCGTACAGGAGCCGATAACAATTTCCGTAACACTAAAGAA
GGTCGTCTAGAGGAGTACAACCCGTTTTATTCTATTATATTACCCCCGGA
ATTTAAACACAAATATAAGGATATGTACCATAATATCAAAGCCAACACGG
AGGTATTAACCTCTCATTTTGATGTACACTGGACGTTAAAACATATACTT
TCGTATCCTAACATTGAGGCGAACCGAAATTACGGACAAAGTTTATTCAC
GGAGATTAATCCTAAAACGAGAACTTGTAGCCAGACTGGTATCCCAAGCA
AATATTGTTTCTGCTTGAGCTCACAAAAATTAGACACTGGATTACCAGAA
GCGAAGCTCGTCACTAACAAAGCTATACAATTTATAAATTTGAAACTGGA
TTCGCATAGTCAGACTAGAACACTATGCTCTCAATTATCTCTCAAGACGA
TTATTAGTTTAGAATATGCCATTGATGAACAAACTAAAGAGGGGATGTAT
TACGTCATTTTTGAAGTAGCCCCTAGCAGTGGCACCTATGACGTCCGAGT
TCGGAAAGATTTGAAGACGGGGACCTTGTTTGTGGACCCGGAAATAAGCC
GGACTAATCGTTATGGTGACCAACCGGCCTGTATTAAAACGACACATCCG
AAATTAGCTCCGTATTGTTATTGTAAATCACTACTCGGTTAGATAGTGGT
AGAACTACAGTTATCGGTCTCTAATTCAAGGGGATTGTATTTTTATCGAA
TGAGggagtgtatcgaatagtagattAACAGTATCGTAGGAACATTTAct
taggagagcagatttaaaCCATTTTGTAATTATGTTTTAATACcaccatg
gatttatcatagaactctggatacaCAACGAGCTGGTTTTTCANN
Run BLAST on NCBI

transcript from alignment at sc0000124:151979..161323-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011299 ID=TCONS_00011299|Name=TCONS_00011299|organism=Clytia hemisphaerica|type=transcript|length=9345bp|location=Sequence derived from alignment at sc0000124:151979..161323- (Clytia hemisphaerica)
TTTGCCGTGTGGCTTCGAGTTATGAGGACTCAATCATTTATGTACATTTT
AATTGTTTGAATTTTTTTTATTTCAGAAAAGAAGAAAGCAAAGACAATTA
TCAAAATATATTGTTAAATTATTTAGGTATGAACGCAATGTTAAGAAATA
TGAGGACAGGCAATTACATTAAAGTTCACATGAAAAAATTGTTCATTGTT
TGCCTTTTGGTGATTTTCACAATTGGCGTCACATTGAACACTTATCTTAA
TAACATAGAAATGGAGCACGCCATACGTACTATGATAATACAACGTTATT
ACCAGCGGCTCCAAATGCGACGCCATTCTTCATCGTCAGGTTTGGAGAGC
CGCGAGAAACCTGGATCAGTATGTAAGATACCTGATTTAAATCCATTTGG
AGTTGAAAGATTGAAAGCCTGGGTTTTGAAAGAGAAACAATATTGTACCG
TGCAGAAATTTGGTAAAATTGTTGATAATTTCTTTGAAGTTGATAACAAT
GCTGGGGAAATCAAAAATGTCGAAATAAGTTATGTGATTAGAGGTCGAAG
AAGAACAAAAGATGGTAAATTAGATCCTCCAAAAGTATTTACAAGACACA
TGGACAAACAGTTTGACTATTACCAAGTATTAAATGATGATTTTCACATC
CATTTTTCACCAAATCATATATTGGAATATTCAGAGAAATTGAAAAAGTT
TAAATCTAATCTGTTGGAGGGAGATTTCTTTCAAGCTATGATAACGAAAA
TGAGTGGTATCAAAGTTAGAGAATACCATGCCACTATATCTAATCGTTCA
CTTGTATGTCAAAAACATGGCCGTGAATTGAATCCGAAATTCGATTCGGG
GAAATTGAAATCCGATAATCGGGAAAAATCGGGATTACCTTACAATATAC
ATATGGTGATGCTGGATGCTATATCAAATGCAAATATGTATCGACAATTA
CCAAAGTTTATGGAAATTTTAGAAGATGATGAAAATGCGATGATATTCAA
AGGTCATGGAATACACGGGGATGGTACAACTTGCCAACTGATGGCTACTT
TAGCTGGTACGTCGTCGTTTATTTTTTTGTTCATAAGAATTCAAGTCTTA
TTATGCAATAGGCCATTTCATAGTCGCAAAGCGTAATGGGTAATAAGGAT
CACTGCGAGTTAACGTCGACTTACTATTGGTCCAAAGATTTGAAAACTTT
TGAAGATTTTTGCGTCTAATTAACGGGAAACCGTTATCGGGGCGCAATCA
GTCCTGACTACCTATGATCTGTTTCGACTTTGAAATGGCCTATGCAGTGT
ATCTTGGAAAAAGCAAAACAAATTTTATATAAAGTGAAACCCACAAATTC
GTTATCTCCCAGCATCTCCTGGAAGCTTGGTAGAACAATTGAAAAATAAT
AGAATTTCTTTGTACAATCAGATAGATATTCAAATATTCAGGTTAGGTTT
TTTAATGTATACCTTCCCCAATTACGGCAGAGACTTTTGAACTTGTGTAA
GAGCATGAGTCTGCTAATGTCACCCATTTTCGGTTTTGTTAACTTTTCAA
CTTTAAGGCTCCAGTGAAAAATCTAGGTGCATGCAATAATGATACCAGNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGTATGTTGCG
GACATAACTATTAAAGTATTTTATCAGATTTTTGACCCCCTTAAGCAGTT
ATGCTAACACTTTGACAATACTAAAGAGTTACATTTGTAGAAACCATGCA
TTTCCTTGTTTTTTTAATTTTTTGTGTCCTCTAGAAGGTCGTTCTTCTAT
TAGAAATATGAGAAAGTTCTAATATCATTGATAAGTCTTCTTTTATTCTT
TTCAAAGAAAAACATGTAATAAAACTGAAATCAAACCAAACCANNNNNNN
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ATAAAAGAATTATCCAGGAATAAAAGTGAAATTCAAAACTTTATTTTTTC
CAAATTTTTTCACCTATTTGGGTGACATTACCAGACTCATGCTCGTAAGA
AAGTGTCTCAGCAAATTCGAATGTCTTGTTTTAAGTTATGTAACTTTGCA
ACCCTATAAGAAATTTATAACTGATAGCATTAATAATATAATGACATTTA
CAAATTCAAGCTCTATATAAGACAAAGATCTCATTATGTATCTTAGACAC
TTGCCGTAGGCCCAAATTCCTCGCTGTTTTTTTTCATTTTTTAAAGAATG
TCTTTTTTATCTTGATCGAAATATCCAAGGCTAAAAAATATATACGTACA
TTTTCAAACTTTTTTGGTTTCTGTAAAAATTTTAACGAAAACTCTTCCCA
GCTCTCAAACAGAACTATTATAATTTGTCATGGACTATTATCTTTTTTCT
GACAATTGAAAAAATCAATAACAAATACGATATATAGATTTCAATTTCAA
ATTTTCATGTCTCCTCTCTTTTAGGCTATATGTACAGACAAGAGGACAGT
AACCCTTGGCAACTACCAAACAATAACAGCTGTGATTCGATACCACTTAT
TTTTAAAGATTTCAATAAAGCAGGTTACACCACTCTTTATAATGAAGATT
TCATTGATGGTGAGTTTGCTTGCTTATTTTTCATTTCTTCATTTGCTCGT
CATATACTGTAAGGCTGGACTTATTGGTTTGCCGTCACCTAACCCTAGAT
TTTGAACATTGAGATTTTGACAATTTATGGAAAGTCAAAATTTGCCATAT
GGGTAATTTTGAAATCTTCGAGTAATGGAGGCTCAAACATATCATAGAAA
TCTTTTAGAATTTATCGGTAAAGAAATATTGCGATTTTCAATTTTCACCT
TGTAAAATTTTTTAATCCGCGAAACTTTCATCCTACATTATTCTCATATT
TTTCAGGCAGTACATTCCACTACAAAATGAATGGCTTTGATAAACCACCT
GTTGACTGGTACCCAAGACCTTATTGGATTGCCGCCCATGAATGGGATGA
AGGTATTGTTTCTAAAACTACTCTCGATGAAGCGATCAATGAAATAAGTT
TCTTTTATTTTGTTTTTACACTTTTCTTTAAAAATACTTCTCTGGTCGGC
TACAATCGTTGCCAATGTATTATGGCACATTTCCGGTGGTCAAATTTAGA
TACATTGCAATAACCTCCCCCTCCCCCTCCGAACAATGTTGGTGGGAAAG
AAATATTGCTTGGCCGGTCCTTAGCTCGCCCCGACAACATTGTTTGGGGG
AAGAGGGGGGATGCTCATTTATGTGCTCTGTGCCATAGGTTTTGTCAATG
ATTGGAGCTCAGCCAGTAGAGCATTCGCTTGATAATCCAAGGGTTGTGGG
TTCGATCCCCTGTCACCACCCACTGAGCGAATGAGTAGCTGATTTAGGCG
GTTAGTTACTGGGATCTGAGAGTAGATATGGTGCTCCTCCTCAGGGACGA
CATGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGATCGTTAACCAGTA
ATAAAACAATTTTGTTACTTTTTCTAAAGAACGCGTCATTTTTATTACTT
CAAATGGCCGATTATAAAAGTATCTTATAAAAATTCCATCTCATCTGCTA
GCCTAGAAATCTAAGCTAGTTTGATTCAGTCTCTTGGATAAATCTGATGG
TTAAGTTGTGACTAAATAACAGTATTCCAAGGCAAACTTAAAATCCGTAA
ATATAAAAAAATCTTTAAAGCGCCGAAAATGCTATATCGCAATAAGCCGT
GTGTCCTAGCCTTGTGAATACGGGCTTAGTTAACTAGGCTACTCATCTGC
CTCCTCAGCATTCGACATACCAGGTCTAGCGGAAATAAAAAAGGATAGAC
ACCTCAAATCTACCAGACAGTCACTAGATGAAAATACTTTATTCTACTTT
ACTAATACTTTTGTTTTTAGTAGTTTAAAGTCCATCTGCTTTCAGTGTGC
GGACTCTCCACTTTTTTACCTCGGGGAACCTATGTTAGCGTATTCAGAAG
AGTTTCCACAGGATAGTAAAAATAGAGTGAACGGACTTTAGAACAGGTTT
AAGCTTAAAGTGCAAAAAAACACGACCAGCGACCGTATTGCAGTGGTAGA
GCATCCGTTTACGGTTCGCAAGGTTGTGGGTTCAACCCCCAGCCGGGTCA
TACCAAAGATTCTCAAAATGGTACTTGATGCCTCTCTGCTTGTTGCTCAG
CAATTAAGAGAAGGATCAAGAGTAAGTTGAGTAATCTAGAGAGAAAGAGT
TGCGCTATGTTAGCGCATTCAGAAGGGTTTCCACAGGATAGTAAAAATAG
AGTGTGACCTTAAGTGAACGGACTTTAGAACAGGTTTAAGCTTAAAGTGC
GAGAAAAAACACTGGTTCTTAAAAAAAAGTTATTTCCATAGGTTGTGGTA
AAAAGCCTTGTATTTGTGAAGACCAACAAATGATGAACATACTAAAGACC
TTTACAACCGTTTGTGAAAAGGAGAAGAAATTCTCTATACAAGTGACAGC
TAATGCACACGATGATCTTAACATGCTTTTCCAAATTGAAGACGAAATTC
GAGGTTGGTGTTTGTTTTTGTTTGTTTGTTTTGTTTTAAAGGGACATAAA
AATAGTAAAATCTACACATTGCGCGAACCACGTGTTATTAAAGAGAACAA
TCAAAATCAGCCATATTTGTTTTGATTTTTGATTTTGACATGTGACATTT
GTTTTTATTTTGTATCCCGCTGTATATACGGTTTGTTTACAAATTTCGTC
AGTACTTTTATGTCCCTTTAATGTCTTGATACTTTAGGCATTTTATAGAG
TCAAAACTTTACTGCTGCAGAAATCTTTAAGGCTTTTAGGAAATTATTCC
GGTTGTTTTAACTTGCGCCTCTAAGTAACACAACGCACCGGATTCAAAAA
CAGCACAGGTGACTCTCGTTAGTTCGAGCTTCTATTATTCGAATTTTTCT
ATGGTTCGAACTGATTCTTAGTCCCCGTCAAGGAGGATCCTTCATAAATT
GCTTTCCATAATTCGAGTCTCTCTTTTATTCGAACAAATTAGATTCCTAG
CTCGAGTTCGAATTCGAGTACTTAATAGCCGTCCCCCCGCTAATTAATTT
TTCGAAAATTTTCCACCCAGGACATTCTTATTCCAACCCCCCCCCCCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNCCCCCCCCCCCCGCTTATTCCAACCCCCCCGACTATTAGG
TACCCGAGAGTATGTGGACACTTTAATTGTCCTTTAGTATTAAGCACTGT
GGAGTTGGTAATTTTTGCTGTTTTTGGTCATTTTTGGCCGTTTTAGGACT
ACTTATAGGGCTGTAACTTTTTATCCAAGAAAGATACGAAAAATCTGAAT
ACATATTTGAAATCAGCAAGCTTTTTTCGAAATAGCCCAATGTCATAGAA
AAATTTTCATTTTTTCATCTTCATATTTCTTCTTTAGATTATTCTCCTTG
GAAATATCTTTCCAACGGTATATAGCTTTCTAACATATTATAAATAGGTG
TTGAGAAAATGCTAAAAAACTTTTTTATTAGCAACTCCAATTTACGGGTC
AGGACAGGCCTTGAGTTGCGTAGTGTAGTTTTTTGAAATTTGTTTTGACT
ACCCCTGGTATTATTTATACCTTATATTTATGTTTGAGCCTTAGCAACCT
GCAACCTTATAAAAAATGTGAATTTCTTCTCTTTCAGACATATACAACTT
CTTCAAAGCTAAGGAGAGAATCAACAATACAATTTTAATTCTGTTTTCGG
ACCATGGCGCTCGTACAGGAGCCGATAACAATTTCCGTAACACTAAAGAA
GGTCGTCTAGAGGAGTACAACCCGTTTTATTCTATTATATTACCCCCGGA
ATTTAAACACAAATATAAGGATATGTACCATAATATCAAAGCCAACACGG
AGGTATTAACCTCTCATTTTGATGTACACTGGACGTTAAAACATATACTT
TCGTATCCTAACATTGAGGCGAACCGAAATTACGGACAAAGTTTATTCAC
GGAGATTAATCCTAAAACGAGAACTTGTAGCCAGACTGGTATCCCAAGCA
AATATTGTTTCTGCTTGAGCTCACAAAAATTAGACACTGGATTACCAGAA
GCGAAGCTCGTCACTAACAAAGCTATACAATTTATAAATTTGAAACTGGA
TTCGCATAGTCAGACTAGAACACTATGCTCTCAATTATCTCTCAAGACGA
TTATTAGTTTAGAATATGCCATTGATGAACAAACTAAAGAGGGGATGTAT
TACGTCATTTTTGAAGTAGCCCCTAGCAGTGGCACCTATGACGTCCGAGT
TCGGAAAGATTTGAAGACGGGGACCTTGTTTGTGGACCCGGAAATAAGCC
GGACTAATCGTTATGGTGACCAACCGGCCTGTATTAAAACGACACATCCG
AAATTAGCTCCGTATTGTTATTGTAAATCACTACTCGGTTAGATAGTGGT
AGAACTACAGTTATCGGTCTCTAATTCAAGGGGATTGTATTTTTATCGAA
TGAGGGAGTGTATCGAATAGTAGATTAACAGTATCGTAGGAACATTTACT
TAGGAGAGCAGATTTAAACCATTTTGTAATTATGTTTTAATACCACCATG
GATTTATCATAGAACTCTGGATACACAACGAGCTGGTTTTTCANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006332XLOC_006332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011299-exon-sc0000124-1575043694:160268..161323TCONS_00011299-exon-sc0000124-1575043694:160268..161323Clytia hemisphaericaexon
TCONS_00011299-exon-sc0000124-1575043694:156615..156749TCONS_00011299-exon-sc0000124-1575043694:156615..156749Clytia hemisphaericaexon
TCONS_00011299-exon-sc0000124-1575043694:156222..156317TCONS_00011299-exon-sc0000124-1575043694:156222..156317Clytia hemisphaericaexon
TCONS_00011299-exon-sc0000124-1575043694:151979..152936TCONS_00011299-exon-sc0000124-1575043694:151979..152936Clytia hemisphaericaexon
TCONS_00011299-exon-sc0000124-1510915933:160268..161323TCONS_00011299-exon-sc0000124-1510915933:160268..161323Clytia hemisphaericaexon
TCONS_00011299-exon-sc0000124-1510915933:156615..156749TCONS_00011299-exon-sc0000124-1510915933:156615..156749Clytia hemisphaericaexon
TCONS_00011299-exon-sc0000124-1510915933:156222..156317TCONS_00011299-exon-sc0000124-1510915933:156222..156317Clytia hemisphaericaexon
TCONS_00011299-exon-sc0000124-1510915933:151979..152936TCONS_00011299-exon-sc0000124-1510915933:151979..152936Clytia hemisphaericaexon
TCONS_00011299-exon-sc0000124-1491911889:160268..161323TCONS_00011299-exon-sc0000124-1491911889:160268..161323Clytia hemisphaericaexon
TCONS_00011299-exon-sc0000124-1491911889:156615..156749TCONS_00011299-exon-sc0000124-1491911889:156615..156749Clytia hemisphaericaexon
TCONS_00011299-exon-sc0000124-1491911889:156222..156317TCONS_00011299-exon-sc0000124-1491911889:156222..156317Clytia hemisphaericaexon
TCONS_00011299-exon-sc0000124-1491911889:151979..152936TCONS_00011299-exon-sc0000124-1491911889:151979..152936Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000124supercontigsc0000124:151979..161323 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000187539	0	0.170155	0	1.6633	0.924936	0.000159925	0.955451	0.00259647	0.286515	0	0	0.824349	0	0	0.781277	8.80578e-10	0	0.595318	0.493866	1.39072	1.43204e-05	0.600142	0.739275	0.529703	0.45991	0	0.327448	0.874688	0.14835
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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