|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011291 ID=TCONS_00011291|Name=TCONS_00011291|organism=Clytia hemisphaerica|type=transcript|length=3778bpRun BLAST on NCBI transcript from alignment at sc0000124:566767..584208+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011291 ID=TCONS_00011291|Name=TCONS_00011291|organism=Clytia hemisphaerica|type=transcript|length=17442bp|location=Sequence derived from alignment at sc0000124:566767..584208+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011291 vs. Swiss-Prot (Human)
Match: L1CAM (Neural cell adhesion molecule L1 OS=Homo sapiens GN=L1CAM PE=1 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 5.268e-27 Identity = 133/517 (25.73%), Postives = 206/517 (39.85%), Query Frame = 3
Query: 123 AVFYCGCEWDPRLDLRVEWYKEGIRMAKF--DDRIYLEDRATGPPRLLYITDLTIQDAGNYSCHAYTKVGNVISEAWASNLLKIKGPPEPPAAVKVSGNCKIRSEVVITWKKGEELAAETRGFFIEFSTNSSSSLGRWFGGKGDPLMPNSEIRATPGTQDSYDVTQYLVPGANLIFRVFGYSDHLDGRPSRPSEIGKCITSPDTPTMNPVNVTGTSKGQEGKLYVHWRPIADVYYGAPNFYYIVGYRQKAEAGTTPPDFAKERVDKNLTYASEFEIPSTSPNVEYEFYVQSGNEKGLSKVEPAIRSAKSGDKRPDNPPRNVRVADISRFSVQLNWDPVERAT------SYRIKYWNVTDAEALRGRSRRGANDPIVYQYQYSDQPNFGVLINMTAQVEFLASVTAINSGGMNEEESNVVSFKTEPRIPGIPSNVHVSVYGR-SAHINWQPPIHPNGYIEQYEVSWQYNQDAGVSQTQGRTRITKDRRSREAYLIDIFQPYTYYDLQLSARNRVGDGE 1646
F C +DP L + W +G + + D+ ++ED L I L D GNYSC A T++ V S A LL + P P V + +S+V ++W E+ A + IEF + + +W+ + PG Q S T L P + FRV + + G PS SE +T P NPV+V G + + + W+P+ + + AP Y V +R + GT P + D L + +TS V YE VQ+ N +G EP + SG+ P P + ++ +V + W PV+ A Y + YW + + R D +V + +L + + V A N G ++ +F T +PG P +H+ S + WQPP+ NG + Y +S+ + G Q R D R L D+ P+ Y QL A + G GE
Sbjct: 535 VTFTCQASFDPSLQPSITWRGDGRDLQELGDSDKYFIEDGR------LVIHSLDYSDQGNYSCVASTELDVVESRA---QLLVVGSPGPVPRLVLSDLHLLTQSQVRVSWSPAEDHNAPIEKYDIEFE-DKEMAPEKWYS-----------LGKVPGNQTS--TTLKLSPYVHYTFRVTAINKYGPGEPSPVSET--VVTPEAAPEKNPVDVKGEGN-ETTNMVITWKPLRWMDWNAPQVQYRVQWRPQ---GTRGPWQEQIVSDPFLV------VSNTSTFVPYEIKVQAVNSQGKGP-EPQVTIGYSGEDYPQAIPELEGIEILNSSAVLVKWRPVDLAQVKGHLRGYNVTYWR--EGSQRKHSKRHIHKDHVVVPANTTSV----ILSGLRPYSSYHLEVQAFN--GRGSGPASEFTFSTPEGVPGHPEALHLECQSNTSLLLRWQPPLSHNGVLTGYVLSYHPLDEGGKGQLSFNLR---DPELRTHNLTDL-SPHLRYRFQLQATTKEGPGE 1003 The following BLAST results are available for this feature:
BLAST of TCONS_00011291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.