TCONS_00011290 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011290
Unique NameTCONS_00011290
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011290 ID=TCONS_00011290|Name=TCONS_00011290|organism=Clytia hemisphaerica|type=transcript|length=1500bp
CCNGCATTGCTGATAACGCGATCGGATCGCCAGCACAAAGTACTGGAACA
GCTGTTGTCTTAGATAAAACAATCATCAACCGTCCTATCATTGCTCAATC
TCACGAGGTCGGATGGAAATACGCCGTTTTCTACTGTGGTTGTGAATGGG
ATCCGCGTCTTGACCTTCGCGTTGAATGGTATAAAGAGGGAATCCGCATG
GCCAAATTCGACGACCGCATTTATCTTGAGGACCGTGCAACTGGACCACC
ACGACTCCTGTATATTACGGATCTGACCATCCAAGACGCCGGAAATTACT
CTTGCCATGCCTACACTAAGGTCGGTAACGTCATCTCTGAAGCATGGGCG
TCCAATTTGTTAAAGATTAAGGGTCCACCCGAACCGCCCGCAGCGGTCAA
AGTGTCAGGAAACTGTAAGATACGTTCAGAAGTCGTCATTACTTGGAAGA
AAGGTGAAGAATTGGCTGCAGAGACCAGAGggtttttcatcgaattttcA
ACCAATTCATCATCATCGTTGGGCCGATGGTTTGGGGGAAAGGGAGATCC
TCTGATGCCCAACTCTGAGATCAGGGCTACACCAGGGACTCAAGACAGTT
ATGATGTGACACAGTATTTAGTACCAGGCGCCAACTTGATTTTCCGTGTT
TTTGGCTACTCTGATCATTTGGATGGCCGCCCGTCCCGCCCATCTGAAAT
CGGAAAATGCATCACTTCGCCGGATACACCCACAATGAACCCGGTAAACG
TCACAGGTACTTCTAAAGGACAGGAAGGAAAACTCTACGTTCATTGGAGA
CCAATCGCAGACGTCTATTACGGCGCGCCCAATTTCTATTACATTGTTGG
CTACCGTCAAAAAGCGGAAGCTGGCACCACACCCCCTGATTTCGCGAAAG
AACGAGTAGACAAAAACTTGACGTACGCAAGCGAGTTCGAAATTCCGTCA
ACGTCGCCGAACGTCGAATACGAATTTTACGTTCAATCTGGTAATGAGAA
AGGATTGTCCAAAGTCGAACCCGCCATTCGCTCAGCGAAATCCGGTGACA
AAAGACCGGATAATCCACCAAGGAACGTTCGCGTTGCAGATATTTCGCGT
TTCTCCGTCCAACTGAACTGGGATCCGGTCGAAAGAGCTACATCAtacag
gatcaAATATTGGAATGTCACTGATGCCGAGGCTCTTCGGGGCCGATCTC
GCCGTGGTGCCAACGATCCTATCGTTTACCAATACCAGTACTCAGACCAA
CCAAACTTCGGCGTTCTGATCAACATGACCGCTCAAGTCGAATTTCTTGC
ATCCGTTACTGCTATCAACTCCGGCGGTATGAATGAGGAAGAATCGAATG
TTGTTTCATTCAAAACGGAGCCCCGTATCCCCGGAATCCCGTCCAACGTT
CATGTCTCAGTGTACGGGCGATCCGCCCATATCAACTGGCAACCGCCAAT
CCACCCTAACGGCTATATTGAACAATACGAGGTTTCATGGCAATATAACC
Run BLAST on NCBI

transcript from alignment at sc0000124:566767..577178+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011290 ID=TCONS_00011290|Name=TCONS_00011290|organism=Clytia hemisphaerica|type=transcript|length=10412bp|location=Sequence derived from alignment at sc0000124:566767..577178+ (Clytia hemisphaerica)
CCNGCATTGCTGATAACGCGATCGGATCGCCAGCACAAAGTACTGGAACA
GCTGTTGTCTTAGGTAAGAAACCTCGCTTATCACACCAAGCTCAAAATTA
GAATTACATCAATTAATAACTTGCAAGTTAAACCAAAAAATTAACGGAAA
ATCATCCACTAAAGTCCATACGTTTttagtgtgcactcttttttgcATGT
GAAAACCAAGTCAGCGTAATTTGTCTAATAGCATCTGCACTCGAGATCTC
GAGCAAACGTGccacactctgcaaactggtACATCTGTAATATTTGTCGT
CTTTTTAAAACCTTTGGCCGGGATAAGAAAGGGGAAAATCTGCATTTTTg
tacctaccccggtggaggtcctataaattaacctgtgtttgttcgtccgt
tcgtctgttcttccGTCNaaatttcagtcagcatttaaactcagtttgta
gaagcttgccttaaaaaatgctattttttgagaaatatgatttttttttg
ctaaaaagcggtttttgaagacgccattatgattttttgaagaaagtgaa
aaacttgaaattcattttcctTAAAGACTTTATTAATGACTTCCATCTCT
TAAAATTTCAGATATGTGATacaatcagtttaaagtttatgagcttgcaa
aattggccttaaaaagtNATCTGCATTTTTgtacctaccccggtggaggt
cctataaattaacctgtgtttgttcgtccgttcgtctgttcttccgtccg
ttcgttcgtctgttaccaacttttctcaggattgaatcataggaatcttt
tgatttttggtacaaaggtgcaaaatggtggttgccaaaatgtgacggag
ccacaaaaaacggctaaaaaaacgggtttttggacttcgtgaaatcattg
gatcattgtttttttctgattttttgcatgaaagtaggtaaaagatggtt
caagcagatttttgtaaaaaaagaatttttcggctcaaaaaacgcatctt
tatctataagaaccactattgataagcatatatcaatgttcttagccaaa
ttactgaattttttgatgagatagatgtcttttttgctcacgaagtcttg
aatatgaaagaatatttcaagagcatgaaattttggtttctaaacgtttt
tttataagaaacaaacgactaattttcNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNtttgtgttctgaatgattgtttaa
cggtcatgctcacgtagatatcaattatatatgtgttaaatgcataacca
ggtaggtccataaaagtataaCTTGTTCTATCCAAAAGTTTCTGTATAAC
TTTAAAGAGTAAAAGCACAGTCGACTTTATCAACCTTCATATTCGTGATA
TGTACCATGGGAGAGTCATCTgagaactttcaaatttttccacccaatac
gtcacttaaacaatagaaaaagtgacgtattggggggtggaacaaaaaca
gaaaagttgcataatatcgtgaagtcattgtagtggtgcatatcatgaat
tcagaactttttttttcCTCGTCAACAGATAAGGcggccgggtagctcag
tcggtagagcattcgccttacaatctaaggtttgtgggttcgatccctgg
TCACCGCAAACTCAGCGGACGAGTAgtttagattgggtaatctgatccag
gcggtaagttactgggagctgagagtaggtgtagCGCTCCActtcagcat
tcgatctcccaggtctagcgtaaatagaaaaggggatagactccctcact
cccggctccgccgacagccaccagatgaatatactcaCTTACTTACAATA
GATAAAACAATCATCAACCGTCCTATCATTGCTCAATCTCACGAGGTCGG
ATGGAAATACGCCGTTTTCTACTGTGGTTGTGAATGGGATCCGCGTCTTG
ACCTTCGCGTTGAATGGTATAAAGAGGGAATCCGCATGGCCAAATTCGAC
GACCGCATTTATCTTGAGGACCGTGCAACTGGACCACCACGACTCCTGTA
TATTACGGATCTGACCATCCAAGACGCCGGAAATTACTCTTGCCATGCCT
ACACTAAGGTTTGCAATCgttatttttcttgaaatccCATATTGAGTATA
GCGGTTTCTTTTTCTCAATTCACCCCCTCATCACCAAGCAGCCTCTTACA
GTGAGCTGTTTGTGACTATAATTATTGGAATCTCTGAAACAACAACGAAA
CACCATCATCCCATTTTTCAACCAAGGggctttgaaattttctttgaaat
taagAGTTTAAAGATAACTTGTTCGCCTCCCCCCACCATTAatagtaaaa
aagaaaacattcatGGGCTTTAATGAAGCCTTCTCGTTTCTCCTTCAAAA
TTAACAGGTCGGTAACGTCATCTCTGAAGCATGGGCGTCCAATTTGTTAA
AGATCAAGGGTCCACCCGAACCGCCCGCAGCGGTCAAAGTGTCAGGAAAC
TGTAAGATACGTTCAGAAGTCGTCATTACTTGGAAGAAAGGTGAAGAATT
GGCNCTGACCATCCAAGACGCCGGAAATTACTCTTGCCATGCCTACACTA
AGGTTTGCAATCgttatttttcttgaaatccCACATTGAGTATAGCGGTT
TCTTTTTCTCAATTCACCCCCTCATCATCAAGCAGCCTCTGACAGTGAGC
TGTTTGTGACTATAATTATTGGAATCTCTGAAACAACAACGAAACACCAT
CATCCCATTTTTCAACCAAGGggcttttaaattttctttgaaaataagaG
TTTAAAGATAACTTGTTCGCCTCCCCCCACCATTAatagtaaaaaagaaa
acattcatGGGCTTTAATGAAGCCTTCTCGTTTCTCCTTCAAAATTAACA
GGTCGGTAACGTCATCTCTGAAGCATGGGCGTCCAATTTGTTAAAGATTA
AGGGTCCACCCGAACCGCCCGCAGCGGTCAAAGTGTCAGGAAACTGTAAG
ATACGTTCAGAAGTCGTCATTACTTGGAAGAAAGGTGAAGAATTGGCTGC
AGAGACCAGAGggtttttcatcgaattttcAACCAATTCATCATCATCGT
TGGGCCGATGGTTTGGGGGAAAGGGAGATCCTCTGATGCCCAACTCTGAG
ATCAGGGCTACACCAGGGACTCAAGACAGTTATGATGTGACACAGTATTT
AGTACCAGGCGCCAACTTGATTTTCCGTGTTTTTGGCTACTCTGATCATT
TGGATGGCCGCCCGTCCCGCCCATCTGAAATCGGAAAATGCATCACTTCG
CCGGATAGTAAGTAATATTTACTGATTCAAAGTAACCTCATTGCTTTTCC
TATTGACGGAACGAGCGTTTGAGCGCACGAAGCGCGCGAATAGCGAGCGG
AGCATCCTTTGCCTAGATCTGCGAAAAATTTTGTTGTATATACTTGATCC
GACCGAAAAATTAGCAAGGTTACAAgtgaaatgtcaaaaataaacggggg
ggggcaTATTACCGGGATGTGGGGGGCTTAAATTGTACtgctgaaaaccc
aaaaaaggtaaatataggcaaaaatcaggctatttagagcaaaataaggt
gCCTTCTCTtcgacagctgaaaatattcttaaaaattgataaacggGGAG
TCCTAATAAGATCCAGGGGGtggaaaattaacaagcggggggcgtttatt
tggaacctaagagtaagatactttgatttttgacccttttccaatatttt
atacaTGAAAGTATGCAAAgttttgggatgagctggagtttttacaagat
actttactaattggtcatttgaagtgatagagatgacgcgttctttagaa
aaagcaacaaaattgttttattactggttaacgaccaaccaaatcaaata
agagcttgtaaaaactccagcttgtcccaaagtATTTCAtccctttttga
aaatatgaaatttcctttggttttcttattgtaaaatattctcttttttg
tcattttttcatttcagataaTTGCCCTTTTTAGCTAAATATTTCTGGTA
TATGAATGATATAATAATGCACTATACGAAGGGCTTTTGcatgggatcat
ccccccccaggaagatgggggggggaatcagattttgttgccagggggga
agtgaaaatttcaagcttgatggggggagaaaggcgaatagggggtatat
tcagtcttctacctagtggggggagtaataggataagtacagaccttcct
ggtgtgtttgggcattcaggcttatgagcctgtctttctAGGGANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagggggatttccc
aattggggggaacacgaattttaaagacaggtggggggggaaaggccaga
tgggggattttagctcatattaggggggaccaaaaagctggaggacgcca
TGTTTGATATGTTCAACAACATTCTGCTCGGcggttttaaacaaaaaaat
caggAAACTAGGAATTGAGCTGTAACATGGCGTAATAAAAGTACTCCAAT
TGTACTGATAGAACCCAGCGCAGGGAGCGTTAACTTTTGAAAGAAGCGGG
CACAGTGAGTTAACGATACTTCTCTTTGCAAAAACGAAACGCTCGTTCCG
CACCCCCTTTCATGTTGATTACAGAAAGTATCGTGTTCcgcgtgcgtgtt
cgagttgtagagactttagctaccgggtgcgccacaaaaaagtttctctc
tttaaaactaattttctcgaaatctaaaaatgttttaaaaaccgttccta
tttcattggaaagaagaaagatNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatatca
aattaaacagaagcataattacacgATACATCATTATCTTCGTTtctgtc
attaaaaatgataattagctgtctaaatgaccttttgttatataaaggag
ggttgattttcaataaaaggcagaaaattcgtcgaaaaaggcaaaaatat
ctggtaaaattcatagaaatacatcaaatatgggtttcgagatacatcca
gccttacatagactttatccaatctaaaaccaaaaatcggaagaaaattt
tggtaaaagtaaattaaagtgattttgatgaagattttaaacctttTCGG
CCTTTCAGTTTcgaaatttatgtgtttaattaccgaaaaatgcttttaat
catgtaaaggctattgtgaTTGAcaattttaatgtaaaaatttgataggt
cgattttcaacgttttcgagcactttctgaaagtaacttttttattcaat
agaggataacttttgatctaatggaccgaatttaataaatgacccatcca
AATTCAAGTTTAtcattcttctttccaatgaaataggaatggttctttta
aaatttttagatttcgagaaaattagttttaaagagagaaacttttttgt
ggcgcacccggtatattctATTGATATATTGAAAGTGtgtgacttttttt
aaaaaagtaattAACTATTAAACGTTTAAGTTCTCTTACTACTGGACACA
TgtcaaaggtaaaaaaaaaaaaaggttgtaaaaaaTAGTAAATGGTGCCG
TTCTGGTGATTCTTTCCTTTCATGTTGTATATAGCTTATCCAACAACACC
GACGTCTTTTCATGATTTGGTTGCGATGGAGTCGTTTATTATCTGTGTTA
TATATAGTAATACTTTAATGTGATTAAATCTTCTCTgtgattaaatttcg
cagaAGACACTAGGTGTTCTATGAAAATCACTGACCtatatataccctgg
accaaatttccaatcccggccaagcaaaatctttgatcggagttttttaa
aaagtggtaccctaatggaaATGCGTCGAGAGCGCTAAAcctactttccc
tcgaaaactttCGATGATGTAGCGCCGATAGACGTTAATTTTGAACACTG
CAAttgcttctttacgggtaccaactCAAAAAataacttcgatcaaagat
ggcgNaatggcttctttacgggtaccaacgcaaaaaaaacttcgatcaaa
gatggcagatatagcttggtccagggatatataaagatCAGTGATGAAAA
TACGATAATTTTTgactttcaatctttttctagCACCCACAATGAACCCG
GTAAACGTCACAGGTACTTCTAAAGGACAGGAAGGAAAACTCTACGTTCA
TTGGAGAGTAAGTCATGTTTGTCATCGTGTTTCTCGAGACGGTTCGATTT
AGAACAACTGTAATGTTTTTTTAAggaacaatagagagtttcgaaaccta
agccaatcaacaacattcttttatttgaaatctcttttgataaacatctt
ttttttcaagttttctattatgtttaaacctattaaaaagcgaattcccg
gtgggggtttATAGCagtgattttttccttatattttgtagttttttcac
ataaaaatattattgataacaatgcatGGTGGGCATGCATGCatgcatgg
tttaattgtcaataaaactgatttctgaagctggaactttctaaaaaccG
CCTGAACAGCCGAGAATCTCTGGAAAAACGGTTTCTCTTGAATTTctgga
gctgtactttatactttttcatgaaattttgcacactgatgcgaAATGGC
AatatctaaaatgtgacggagcctgatttttgggaaaaaaattcccGCTA
AATATGCCGGGAAAACTGGTGTTtgggcattttctcgagattttctcatt
agatttttctggatttttgcacaaagatataaattagtAATGCCTAAAAT
ATGACCGAGTCCGATTCAGTTAGGCCCAATATACATTGTGCTTGTTTTAA
TTAATCTTTTCGTTTTTCATTAGCCAATCGCAGACGTCTATTACGGCGCG
CCCAATTTCTATTACATTGTTGGCTACCGTCAAAAAGCGGAAGCTGGCAC
CACACCCCCTGATTTCGCGAAAGAACGAGTAGACAAAAACTTGACGTACG
CAAGCGAGTTCGAAATTCCGTCAACGTCGCCGAACGTCGAATACGAATTT
TACGTTCAATCTGGTAATGAGAAAGGATTGTCCAAAGTCGAACCCGCCAT
TCGCTCAGCGAAATCCGGTGACAAAAGTAAGTCGTATTATTTCATTCTTT
CTTAATATTTTCCACTTGTGGAAGAATTCTCTGTTTTCACCTTGATACTT
TGAGTTTCCCGTATTGTATCAGTTGTGTGCGGTCTCTTTCCGAATCACCT
TACACAAATTTTTTAGATAAGCAACCCCAATCTTCTGCTCAGGGCTGacg
ttgcttagcattctagctcaatttctgagaaatttgttTTGACCGCCCCT
TATATTATGACATAATTTATTTacttattgggtcaagggctacCGTTCAT
CATGGTCAGATTATCTAGTTTTGTTTATCATACCTTCTCAAATTCtttat
ttgtatatttttcCTATCGCCCCTTATGAAACTATGCAAAAACATTCCAG
AGCTAATTTATTGAGTAAACTAAATGTTGGTGAATCAAGGATCCAATACC
AAATTGAATGAACAGTTGTGGGAACGGGTGggcatttttggacctaccgg
gaggtcctttaatttgaccgttgtccgttcgtctgttacaagcttttctc
gggattggctcattaatttttttttattttttgcacaatgatacaaaata
gcaatgcctaaaaagtgacggagcccgatttttgaaaaaaaatttttttg
gggggggggggcaatttgggccaaaaactacctaaaaaaaaggttttttg
gactttgtgcaaaattacttcattagtttttcctgatttttggcaaaaag
atGGAGAACAAGGTTctctaaaatgtggctgaagtaatttttctcggaaa
attttttttcgtcgtaaaatacggatttccGCAAGTTTGgcccaaaaact
acctaaaaataagttttttttggactttgtgcaaaattgcttcattagtt
tttcctgatttttggcaaaaagatGGAGaacaaggttctctaaaaagtga
ctgaagcagttctttaaaaagtgactgaagcagtttttttcggaaaattt
ttcccttatgtcatttttagggaaaaagaacatttctcgcgattggatcg
atattcttttctgattttttgcactttgatgtaaaatggtaatcNNatgg
ggttttctggactttgtgtgaaattgcttcattagttttttcaaattttt
tggacaaagataaaAGGCAAGTATCTCTAAAACGTAACTCAAGCTGTTTT
TTgcggaaaaattttttggctgtaaaaatcggattttcttatttggggaa
actcccttttgtcatatttagggaaaataagcatttctcgagattggctt
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAAGCTGCTCAttacactttcttactctcttgctatttgtcctattt
ttatctgattttgatcaccaggtaggtccgttcagcatgttgcttgtttt
ctttataagcaaccagTTTGCTAAGCCTCGAGCCCTGAAACCAGccatat
tttttactttctcctaaaataaaagctttttcaagtctatttcaaattag
ctggcagtgtttttttcaaacttcaataatttttgatagaatttgaatta
gttagcggttctgtgctcgttaaaaagataattcggagtgtggaatatta
tcaaaaaagaaaaaattgaagaaaatggaagataaacattttttctgaCG
TTCATTTACTTAAGGCCGGTATCCACTTTCGTGCGAAAttggcgacagtt
tttttctcaacattttttgccaaaagaaaagattacgtcgtttcgtgcga
acaaaaaaaaagttgaaggaagttcatcttttttcaaccgttacgtcaat
tttgaccaatggaatttcttcatttttcaaccgaccaatgttCTTACaaa
cacgtcaaaaagttttcgctcatgtcgcgcgaaaatggagaccggccttt
atagCTTAAGACTGCGTTTACATTCACTCACTCTTTCTCTGTTTTACTTT
AGGACCGGATAATCCACCAAGGAACGTTCGCGTTGCAGATATTTCGCGTT
TCTCCGTCCAACTGAACTGGGATCCGGTCGAAAGAGCTACATCAtacagg
gtaaacgcgaaacTCTATGGATTATATTTTTCTTATCAAATACGAGATTA
ATGGAAGCAACGGAATTATTTTGTACAATGGGAGATCAATTGGGCTTTAA
TTCTCTAGATTTCATATTTAATTCTATTctgatttttgacattttgacgc
ttatttttttcagatcaAATATTGGAATGTCACTGATGCCGAGGCTCTTC
GGGGCCGATCTCGCCGTGGTGCCAACGATCCTATCGTTTACCAATACCAG
TACTCAGACCAACCAAACTTCGGCGTTCTGATCAACATGACCGCTCAAGT
CGAATTTCTTGCATCCGTTACTGCTATCAACTCCGGCGGTATGAATGAGG
AAGAATCGAATGTTGTTTCATTCAAAACGGAGCCCCGTATCCCCGGAATC
CCGTCCAACGTTCATGTCTCAGTGTACGGGCGATCCGCCCATATCAACTG
GCAACCGCCAATCCACCCTAACGGCTATATTGAACAATACGAGGTTTCAT
GGCAATATAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006328XLOC_006328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011290-exon-sc0000124-1491911889:566767..566829TCONS_00011290-exon-sc0000124-1491911889:566767..566829Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1510915933:566767..566829TCONS_00011290-exon-sc0000124-1510915933:566767..566829Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1575043694:566767..566829TCONS_00011290-exon-sc0000124-1575043694:566767..566829Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1491911889:568618..568874TCONS_00011290-exon-sc0000124-1491911889:568618..568874Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1510915933:568618..568874TCONS_00011290-exon-sc0000124-1510915933:568618..568874Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1575043694:568618..568874TCONS_00011290-exon-sc0000124-1575043694:568618..568874Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1491911889:569668..570073TCONS_00011290-exon-sc0000124-1491911889:569668..570073Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1510915933:569668..570073TCONS_00011290-exon-sc0000124-1510915933:569668..570073Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1575043694:569668..570073TCONS_00011290-exon-sc0000124-1575043694:569668..570073Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1491911889:573400..573473TCONS_00011290-exon-sc0000124-1491911889:573400..573473Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1510915933:573400..573473TCONS_00011290-exon-sc0000124-1510915933:573400..573473Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1575043694:573400..573473TCONS_00011290-exon-sc0000124-1575043694:573400..573473Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1491911889:574140..574392TCONS_00011290-exon-sc0000124-1491911889:574140..574392Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1510915933:574140..574392TCONS_00011290-exon-sc0000124-1510915933:574140..574392Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1575043694:574140..574392TCONS_00011290-exon-sc0000124-1575043694:574140..574392Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1491911889:576569..576666TCONS_00011290-exon-sc0000124-1491911889:576569..576666Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1510915933:576569..576666TCONS_00011290-exon-sc0000124-1510915933:576569..576666Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1575043694:576569..576666TCONS_00011290-exon-sc0000124-1575043694:576569..576666Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1491911889:576830..577178TCONS_00011290-exon-sc0000124-1491911889:576830..577178Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1510915933:576830..577178TCONS_00011290-exon-sc0000124-1510915933:576830..577178Clytia hemisphaericaexon
TCONS_00011290-exon-sc0000124-1575043694:576830..577178TCONS_00011290-exon-sc0000124-1575043694:576830..577178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000124supercontigsc0000124:566767..577178 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.15539	5.05096	20.3392	22.3121	75.9974	83.5478	35.0743	42.7448	35.5182	57.1734	33.5284	30.5867	33.4188	30.0023	22.2571	29.5753	34.0805	31.875	14.1307	24.5965	23.8728	25.8684	3.30769	11.0596	25.0372	19.1608	17.8268	13.9166	13.5132	16.1842
Blast
[Close]
BLAST of TCONS_00011290 vs. Swiss-Prot (Human)
Match: NRCAM (Neuronal cell adhesion molecule OS=Homo sapiens GN=NRCAM PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 1.617e-27
Identity = 119/468 (25.43%), Postives = 193/468 (41.24%), Query Frame = 3 
Query:  129 FYCGCEWDPRLDLRVEWYKEGIRMAKFDDRIYLEDRATGPPRLLYITDLTIQDAGNYSCHAYTKVGNVISEAWASNLLKIKGP------PEPPAAVKVSGNCKIRSEVVITWKKGEELAAETRGFFIEFSTNSSSSLGRWFGGKGDPLMPNSEIRATPGTQDSYDVTQYLVPGANLIFRVFGYSDHLDGRPSRPSEIGKCITSPDTPTMNPVNVTGTSKGQEGKLYVHWRPIADVYYGAPNFYYIVGYRQKAEAGTTPPDFAKERVDKNLTYASEFEIPSTSPNVEYEFYVQSGNEKGLSKVEPAIRSAKSGDKRPDNPPRNVRVADISRFSVQLNWDPVERAT------SYRIKYWNVTDAEALRGRSRRGANDPIVYQYQYSDQPNFGVLINMTAQVEFLASVTAINSGGMNEEESNVVSFKTEPRIPGIPSNVH-VSVYGRSAHINWQPPIHPNGYIEQYEVSWQ 1493
            F C  + D  L L V W K+  R    D+R  ++         L + D++  D+G Y+C A T + +V + A  S +     P      P PP  ++++   ++   V ++W  G++  +    F IE+  ++    G W           +E+    GTQ +  +   L P  N  FRV   +      PS  SE  + +T    P  NP  V G    +   L + W+P+       P   Y V +RQK        D   E     +   S++ +  T   V Y   VQ+ N+ G +  EPA+    SG+  P   P NVRV  ++    +++WDPV   +       YRI YW    +     R+RR     I+    +      G+L  +     +  +V  +N  G      + V F T   +P  PS++  V+    S  + W PP HPNG + +Y + +Q
Sbjct:  565 FECKVKHDHTLSLTVLWLKDN-RELPSDERFTVDKDH------LVVADVSDDDSGTYTCVANTTLDSVSASAVLSVVAPTPTPAPVYDVPNPPFDLELTD--QLDKSVQLSWTPGDDNNSPITKFIIEYE-DAMHKPGLWHH--------QTEVS---GTQTTAQLK--LSPYVNYSFRVMAVNSIGKSLPSEASE--QYLTKASEPDKNPTAVEGLG-SEPDNLVITWKPLNGFESNGPGLQYKVSWRQK--------DGDDEWTSVVVANVSKYIVSGTPTFVPYLIKVQALNDMGFAP-EPAVVMGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSK---RNRRHIEKKIL---TFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRV-FNTPEGVPSAPSSLKIVNPTLDSLTLEWDPPSHPNGILTEYTLKYQ 990
The following BLAST results are available for this feature:
BLAST of TCONS_00011290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NRCAM1.617e-2725.43Neuronal cell adhesion molecule OS=Homo sapiens GN... [more]
back to top