TCONS_00011289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011289
Unique NameTCONS_00011289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1695

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011289 ID=TCONS_00011289|Name=TCONS_00011289|organism=Clytia hemisphaerica|type=transcript|length=1695bp
CCNGCATTGCTGATAACGCGATCGGATCGCCAGCACAAAGTACTGGAACA
GCTGTTGTCTTAGATAAAACAATCATCAACCGTCCTATCATTGCTCAATC
TCACGAGGTCGGATGGAAATACGCCGTTTTCTACTGTGGTTGTGAATGGG
ATCCGCGTCTTGACCTTCGCGTTGAATGGTATAAAGAGGGAATCCGCATG
GCCAAATTCGACGACCGCATTTATCTTGAGGACCGTGCAACTGGACCACC
ACGACTCCTGTATATTACGGATCTGACCATCCAAGACGCCGGAAATTACT
CTTGCCATGCCTACACTAAGGTCGGTAACGTCATCTCTGAAGCATGGGCG
TCCAATTTGTTAAAGATCAAGGGTCCACCCGAACCGCCCGCAGCGGTCAA
AGTGTCAGGAAACTGTAAGATACGTTCAGAAGTCGTCATTACTTGGAAGA
AAGGTGAAGAATTGGCNCTGACCATCCAAGACGCCGGAAATTACTCTTGC
CATGCCTACACTAAGGTCGGTAACGTCATCTCTGAAGCATGGGCGTCCAA
TTTGTTAAAGATTAAGGGTCCACCCGAACCGCCCGCAGCGGTCAAAGTGT
CAGGAAACTGTAAGATACGTTCAGAAGTCGTCATTACTTGGAAGAAAGGT
GAAGAATTGGCTGCAGAGACCAGAGggtttttcatcgaattttcAACCAA
TTCATCATCATCGTTGGGCCGATGGTTTGGGGGAAAGGGAGATCCTCTGA
TGCCCAACTCTGAGATCAGGGCTACACCAGGGACTCAAGACAGTTATGAT
GTGACACAGTATTTAGTACCAGGCGCCAACTTGATTTTCCGTGTTTTTGG
CTACTCTGATCATTTGGATGGCCGCCCGTCCCGCCCATCTGAAATCGGAA
AATGCATCACTTCGCCGGATACACCCACAATGAACCCGGTAAACGTCACA
GGTACTTCTAAAGGACAGGAAGGAAAACTCTACGTTCATTGGAGACCAAT
CGCAGACGTCTATTACGGCGCGCCCAATTTCTATTACATTGTTGGCTACC
GTCAAAAAGCGGAAGCTGGCACCACACCCCCTGATTTCGCGAAAGAACGA
GTAGACAAAAACTTGACGTACGCAAGCGAGTTCGAAATTCCGTCAACGTC
GCCGAACGTCGAATACGAATTTTACGTTCAATCTGGTAATGAGAAAGGAT
TGTCCAAAGTCGAACCCGCCATTCGCTCAGCGAAATCCGGTGACAAAAGA
CCGGATAATCCACCAAGGAACGTTCGCGTTGCAGATATTTCGCGTTTCTC
CGTCCAACTGAACTGGGATCCGGTCGAAAGAGCTACATCAtacaggatca
AATATTGGAATGTCACTGATGCCGAGGCTCTTCGGGGCCGATCTCGCCGT
GGTGCCAACGATCCTATCGTTTACCAATACCAGTACTCAGACCAACCAAA
CTTCGGCGTTCTGATCAACATGACCGCTCAAGTCGAATTTCTTGCATCCG
TTACTGCTATCAACTCCGGCGGTATGAATGAGGAAGAATCGAATGTTGTT
TCATTCAAAACGGAGCCCCGTATCCCCGGAATCCCGTCCAACGTTCATGT
CTCAGTGTACGGGCGATCCGCCCATATCAACTGGCAACCGCCAATCCACC
CTAACGGCTATATTGAACAATACGAGGTTTCATGGCAATATAACC
Run BLAST on NCBI

transcript from alignment at sc0000124:566767..577178+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011289 ID=TCONS_00011289|Name=TCONS_00011289|organism=Clytia hemisphaerica|type=transcript|length=10412bp|location=Sequence derived from alignment at sc0000124:566767..577178+ (Clytia hemisphaerica)
CCNGCATTGCTGATAACGCGATCGGATCGCCAGCACAAAGTACTGGAACA
GCTGTTGTCTTAGGTAAGAAACCTCGCTTATCACACCAAGCTCAAAATTA
GAATTACATCAATTAATAACTTGCAAGTTAAACCAAAAAATTAACGGAAA
ATCATCCACTAAAGTCCATACGTTTttagtgtgcactcttttttgcATGT
GAAAACCAAGTCAGCGTAATTTGTCTAATAGCATCTGCACTCGAGATCTC
GAGCAAACGTGccacactctgcaaactggtACATCTGTAATATTTGTCGT
CTTTTTAAAACCTTTGGCCGGGATAAGAAAGGGGAAAATCTGCATTTTTg
tacctaccccggtggaggtcctataaattaacctgtgtttgttcgtccgt
tcgtctgttcttccGTCNaaatttcagtcagcatttaaactcagtttgta
gaagcttgccttaaaaaatgctattttttgagaaatatgatttttttttg
ctaaaaagcggtttttgaagacgccattatgattttttgaagaaagtgaa
aaacttgaaattcattttcctTAAAGACTTTATTAATGACTTCCATCTCT
TAAAATTTCAGATATGTGATacaatcagtttaaagtttatgagcttgcaa
aattggccttaaaaagtNATCTGCATTTTTgtacctaccccggtggaggt
cctataaattaacctgtgtttgttcgtccgttcgtctgttcttccgtccg
ttcgttcgtctgttaccaacttttctcaggattgaatcataggaatcttt
tgatttttggtacaaaggtgcaaaatggtggttgccaaaatgtgacggag
ccacaaaaaacggctaaaaaaacgggtttttggacttcgtgaaatcattg
gatcattgtttttttctgattttttgcatgaaagtaggtaaaagatggtt
caagcagatttttgtaaaaaaagaatttttcggctcaaaaaacgcatctt
tatctataagaaccactattgataagcatatatcaatgttcttagccaaa
ttactgaattttttgatgagatagatgtcttttttgctcacgaagtcttg
aatatgaaagaatatttcaagagcatgaaattttggtttctaaacgtttt
tttataagaaacaaacgactaattttcNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNtttgtgttctgaatgattgtttaa
cggtcatgctcacgtagatatcaattatatatgtgttaaatgcataacca
ggtaggtccataaaagtataaCTTGTTCTATCCAAAAGTTTCTGTATAAC
TTTAAAGAGTAAAAGCACAGTCGACTTTATCAACCTTCATATTCGTGATA
TGTACCATGGGAGAGTCATCTgagaactttcaaatttttccacccaatac
gtcacttaaacaatagaaaaagtgacgtattggggggtggaacaaaaaca
gaaaagttgcataatatcgtgaagtcattgtagtggtgcatatcatgaat
tcagaactttttttttcCTCGTCAACAGATAAGGcggccgggtagctcag
tcggtagagcattcgccttacaatctaaggtttgtgggttcgatccctgg
TCACCGCAAACTCAGCGGACGAGTAgtttagattgggtaatctgatccag
gcggtaagttactgggagctgagagtaggtgtagCGCTCCActtcagcat
tcgatctcccaggtctagcgtaaatagaaaaggggatagactccctcact
cccggctccgccgacagccaccagatgaatatactcaCTTACTTACAATA
GATAAAACAATCATCAACCGTCCTATCATTGCTCAATCTCACGAGGTCGG
ATGGAAATACGCCGTTTTCTACTGTGGTTGTGAATGGGATCCGCGTCTTG
ACCTTCGCGTTGAATGGTATAAAGAGGGAATCCGCATGGCCAAATTCGAC
GACCGCATTTATCTTGAGGACCGTGCAACTGGACCACCACGACTCCTGTA
TATTACGGATCTGACCATCCAAGACGCCGGAAATTACTCTTGCCATGCCT
ACACTAAGGTTTGCAATCgttatttttcttgaaatccCATATTGAGTATA
GCGGTTTCTTTTTCTCAATTCACCCCCTCATCACCAAGCAGCCTCTTACA
GTGAGCTGTTTGTGACTATAATTATTGGAATCTCTGAAACAACAACGAAA
CACCATCATCCCATTTTTCAACCAAGGggctttgaaattttctttgaaat
taagAGTTTAAAGATAACTTGTTCGCCTCCCCCCACCATTAatagtaaaa
aagaaaacattcatGGGCTTTAATGAAGCCTTCTCGTTTCTCCTTCAAAA
TTAACAGGTCGGTAACGTCATCTCTGAAGCATGGGCGTCCAATTTGTTAA
AGATCAAGGGTCCACCCGAACCGCCCGCAGCGGTCAAAGTGTCAGGAAAC
TGTAAGATACGTTCAGAAGTCGTCATTACTTGGAAGAAAGGTGAAGAATT
GGCNCTGACCATCCAAGACGCCGGAAATTACTCTTGCCATGCCTACACTA
AGGTTTGCAATCgttatttttcttgaaatccCACATTGAGTATAGCGGTT
TCTTTTTCTCAATTCACCCCCTCATCATCAAGCAGCCTCTGACAGTGAGC
TGTTTGTGACTATAATTATTGGAATCTCTGAAACAACAACGAAACACCAT
CATCCCATTTTTCAACCAAGGggcttttaaattttctttgaaaataagaG
TTTAAAGATAACTTGTTCGCCTCCCCCCACCATTAatagtaaaaaagaaa
acattcatGGGCTTTAATGAAGCCTTCTCGTTTCTCCTTCAAAATTAACA
GGTCGGTAACGTCATCTCTGAAGCATGGGCGTCCAATTTGTTAAAGATTA
AGGGTCCACCCGAACCGCCCGCAGCGGTCAAAGTGTCAGGAAACTGTAAG
ATACGTTCAGAAGTCGTCATTACTTGGAAGAAAGGTGAAGAATTGGCTGC
AGAGACCAGAGggtttttcatcgaattttcAACCAATTCATCATCATCGT
TGGGCCGATGGTTTGGGGGAAAGGGAGATCCTCTGATGCCCAACTCTGAG
ATCAGGGCTACACCAGGGACTCAAGACAGTTATGATGTGACACAGTATTT
AGTACCAGGCGCCAACTTGATTTTCCGTGTTTTTGGCTACTCTGATCATT
TGGATGGCCGCCCGTCCCGCCCATCTGAAATCGGAAAATGCATCACTTCG
CCGGATAGTAAGTAATATTTACTGATTCAAAGTAACCTCATTGCTTTTCC
TATTGACGGAACGAGCGTTTGAGCGCACGAAGCGCGCGAATAGCGAGCGG
AGCATCCTTTGCCTAGATCTGCGAAAAATTTTGTTGTATATACTTGATCC
GACCGAAAAATTAGCAAGGTTACAAgtgaaatgtcaaaaataaacggggg
ggggcaTATTACCGGGATGTGGGGGGCTTAAATTGTACtgctgaaaaccc
aaaaaaggtaaatataggcaaaaatcaggctatttagagcaaaataaggt
gCCTTCTCTtcgacagctgaaaatattcttaaaaattgataaacggGGAG
TCCTAATAAGATCCAGGGGGtggaaaattaacaagcggggggcgtttatt
tggaacctaagagtaagatactttgatttttgacccttttccaatatttt
atacaTGAAAGTATGCAAAgttttgggatgagctggagtttttacaagat
actttactaattggtcatttgaagtgatagagatgacgcgttctttagaa
aaagcaacaaaattgttttattactggttaacgaccaaccaaatcaaata
agagcttgtaaaaactccagcttgtcccaaagtATTTCAtccctttttga
aaatatgaaatttcctttggttttcttattgtaaaatattctcttttttg
tcattttttcatttcagataaTTGCCCTTTTTAGCTAAATATTTCTGGTA
TATGAATGATATAATAATGCACTATACGAAGGGCTTTTGcatgggatcat
ccccccccaggaagatgggggggggaatcagattttgttgccagggggga
agtgaaaatttcaagcttgatggggggagaaaggcgaatagggggtatat
tcagtcttctacctagtggggggagtaataggataagtacagaccttcct
ggtgtgtttgggcattcaggcttatgagcctgtctttctAGGGANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagggggatttccc
aattggggggaacacgaattttaaagacaggtggggggggaaaggccaga
tgggggattttagctcatattaggggggaccaaaaagctggaggacgcca
TGTTTGATATGTTCAACAACATTCTGCTCGGcggttttaaacaaaaaaat
caggAAACTAGGAATTGAGCTGTAACATGGCGTAATAAAAGTACTCCAAT
TGTACTGATAGAACCCAGCGCAGGGAGCGTTAACTTTTGAAAGAAGCGGG
CACAGTGAGTTAACGATACTTCTCTTTGCAAAAACGAAACGCTCGTTCCG
CACCCCCTTTCATGTTGATTACAGAAAGTATCGTGTTCcgcgtgcgtgtt
cgagttgtagagactttagctaccgggtgcgccacaaaaaagtttctctc
tttaaaactaattttctcgaaatctaaaaatgttttaaaaaccgttccta
tttcattggaaagaagaaagatNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatatca
aattaaacagaagcataattacacgATACATCATTATCTTCGTTtctgtc
attaaaaatgataattagctgtctaaatgaccttttgttatataaaggag
ggttgattttcaataaaaggcagaaaattcgtcgaaaaaggcaaaaatat
ctggtaaaattcatagaaatacatcaaatatgggtttcgagatacatcca
gccttacatagactttatccaatctaaaaccaaaaatcggaagaaaattt
tggtaaaagtaaattaaagtgattttgatgaagattttaaacctttTCGG
CCTTTCAGTTTcgaaatttatgtgtttaattaccgaaaaatgcttttaat
catgtaaaggctattgtgaTTGAcaattttaatgtaaaaatttgataggt
cgattttcaacgttttcgagcactttctgaaagtaacttttttattcaat
agaggataacttttgatctaatggaccgaatttaataaatgacccatcca
AATTCAAGTTTAtcattcttctttccaatgaaataggaatggttctttta
aaatttttagatttcgagaaaattagttttaaagagagaaacttttttgt
ggcgcacccggtatattctATTGATATATTGAAAGTGtgtgacttttttt
aaaaaagtaattAACTATTAAACGTTTAAGTTCTCTTACTACTGGACACA
TgtcaaaggtaaaaaaaaaaaaaggttgtaaaaaaTAGTAAATGGTGCCG
TTCTGGTGATTCTTTCCTTTCATGTTGTATATAGCTTATCCAACAACACC
GACGTCTTTTCATGATTTGGTTGCGATGGAGTCGTTTATTATCTGTGTTA
TATATAGTAATACTTTAATGTGATTAAATCTTCTCTgtgattaaatttcg
cagaAGACACTAGGTGTTCTATGAAAATCACTGACCtatatataccctgg
accaaatttccaatcccggccaagcaaaatctttgatcggagttttttaa
aaagtggtaccctaatggaaATGCGTCGAGAGCGCTAAAcctactttccc
tcgaaaactttCGATGATGTAGCGCCGATAGACGTTAATTTTGAACACTG
CAAttgcttctttacgggtaccaactCAAAAAataacttcgatcaaagat
ggcgNaatggcttctttacgggtaccaacgcaaaaaaaacttcgatcaaa
gatggcagatatagcttggtccagggatatataaagatCAGTGATGAAAA
TACGATAATTTTTgactttcaatctttttctagCACCCACAATGAACCCG
GTAAACGTCACAGGTACTTCTAAAGGACAGGAAGGAAAACTCTACGTTCA
TTGGAGAGTAAGTCATGTTTGTCATCGTGTTTCTCGAGACGGTTCGATTT
AGAACAACTGTAATGTTTTTTTAAggaacaatagagagtttcgaaaccta
agccaatcaacaacattcttttatttgaaatctcttttgataaacatctt
ttttttcaagttttctattatgtttaaacctattaaaaagcgaattcccg
gtgggggtttATAGCagtgattttttccttatattttgtagttttttcac
ataaaaatattattgataacaatgcatGGTGGGCATGCATGCatgcatgg
tttaattgtcaataaaactgatttctgaagctggaactttctaaaaaccG
CCTGAACAGCCGAGAATCTCTGGAAAAACGGTTTCTCTTGAATTTctgga
gctgtactttatactttttcatgaaattttgcacactgatgcgaAATGGC
AatatctaaaatgtgacggagcctgatttttgggaaaaaaattcccGCTA
AATATGCCGGGAAAACTGGTGTTtgggcattttctcgagattttctcatt
agatttttctggatttttgcacaaagatataaattagtAATGCCTAAAAT
ATGACCGAGTCCGATTCAGTTAGGCCCAATATACATTGTGCTTGTTTTAA
TTAATCTTTTCGTTTTTCATTAGCCAATCGCAGACGTCTATTACGGCGCG
CCCAATTTCTATTACATTGTTGGCTACCGTCAAAAAGCGGAAGCTGGCAC
CACACCCCCTGATTTCGCGAAAGAACGAGTAGACAAAAACTTGACGTACG
CAAGCGAGTTCGAAATTCCGTCAACGTCGCCGAACGTCGAATACGAATTT
TACGTTCAATCTGGTAATGAGAAAGGATTGTCCAAAGTCGAACCCGCCAT
TCGCTCAGCGAAATCCGGTGACAAAAGTAAGTCGTATTATTTCATTCTTT
CTTAATATTTTCCACTTGTGGAAGAATTCTCTGTTTTCACCTTGATACTT
TGAGTTTCCCGTATTGTATCAGTTGTGTGCGGTCTCTTTCCGAATCACCT
TACACAAATTTTTTAGATAAGCAACCCCAATCTTCTGCTCAGGGCTGacg
ttgcttagcattctagctcaatttctgagaaatttgttTTGACCGCCCCT
TATATTATGACATAATTTATTTacttattgggtcaagggctacCGTTCAT
CATGGTCAGATTATCTAGTTTTGTTTATCATACCTTCTCAAATTCtttat
ttgtatatttttcCTATCGCCCCTTATGAAACTATGCAAAAACATTCCAG
AGCTAATTTATTGAGTAAACTAAATGTTGGTGAATCAAGGATCCAATACC
AAATTGAATGAACAGTTGTGGGAACGGGTGggcatttttggacctaccgg
gaggtcctttaatttgaccgttgtccgttcgtctgttacaagcttttctc
gggattggctcattaatttttttttattttttgcacaatgatacaaaata
gcaatgcctaaaaagtgacggagcccgatttttgaaaaaaaatttttttg
gggggggggggcaatttgggccaaaaactacctaaaaaaaaggttttttg
gactttgtgcaaaattacttcattagtttttcctgatttttggcaaaaag
atGGAGAACAAGGTTctctaaaatgtggctgaagtaatttttctcggaaa
attttttttcgtcgtaaaatacggatttccGCAAGTTTGgcccaaaaact
acctaaaaataagttttttttggactttgtgcaaaattgcttcattagtt
tttcctgatttttggcaaaaagatGGAGaacaaggttctctaaaaagtga
ctgaagcagttctttaaaaagtgactgaagcagtttttttcggaaaattt
ttcccttatgtcatttttagggaaaaagaacatttctcgcgattggatcg
atattcttttctgattttttgcactttgatgtaaaatggtaatcNNatgg
ggttttctggactttgtgtgaaattgcttcattagttttttcaaattttt
tggacaaagataaaAGGCAAGTATCTCTAAAACGTAACTCAAGCTGTTTT
TTgcggaaaaattttttggctgtaaaaatcggattttcttatttggggaa
actcccttttgtcatatttagggaaaataagcatttctcgagattggctt
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAAGCTGCTCAttacactttcttactctcttgctatttgtcctattt
ttatctgattttgatcaccaggtaggtccgttcagcatgttgcttgtttt
ctttataagcaaccagTTTGCTAAGCCTCGAGCCCTGAAACCAGccatat
tttttactttctcctaaaataaaagctttttcaagtctatttcaaattag
ctggcagtgtttttttcaaacttcaataatttttgatagaatttgaatta
gttagcggttctgtgctcgttaaaaagataattcggagtgtggaatatta
tcaaaaaagaaaaaattgaagaaaatggaagataaacattttttctgaCG
TTCATTTACTTAAGGCCGGTATCCACTTTCGTGCGAAAttggcgacagtt
tttttctcaacattttttgccaaaagaaaagattacgtcgtttcgtgcga
acaaaaaaaaagttgaaggaagttcatcttttttcaaccgttacgtcaat
tttgaccaatggaatttcttcatttttcaaccgaccaatgttCTTACaaa
cacgtcaaaaagttttcgctcatgtcgcgcgaaaatggagaccggccttt
atagCTTAAGACTGCGTTTACATTCACTCACTCTTTCTCTGTTTTACTTT
AGGACCGGATAATCCACCAAGGAACGTTCGCGTTGCAGATATTTCGCGTT
TCTCCGTCCAACTGAACTGGGATCCGGTCGAAAGAGCTACATCAtacagg
gtaaacgcgaaacTCTATGGATTATATTTTTCTTATCAAATACGAGATTA
ATGGAAGCAACGGAATTATTTTGTACAATGGGAGATCAATTGGGCTTTAA
TTCTCTAGATTTCATATTTAATTCTATTctgatttttgacattttgacgc
ttatttttttcagatcaAATATTGGAATGTCACTGATGCCGAGGCTCTTC
GGGGCCGATCTCGCCGTGGTGCCAACGATCCTATCGTTTACCAATACCAG
TACTCAGACCAACCAAACTTCGGCGTTCTGATCAACATGACCGCTCAAGT
CGAATTTCTTGCATCCGTTACTGCTATCAACTCCGGCGGTATGAATGAGG
AAGAATCGAATGTTGTTTCATTCAAAACGGAGCCCCGTATCCCCGGAATC
CCGTCCAACGTTCATGTCTCAGTGTACGGGCGATCCGCCCATATCAACTG
GCAACCGCCAATCCACCCTAACGGCTATATTGAACAATACGAGGTTTCAT
GGCAATATAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006328XLOC_006328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011289-exon-sc0000124-1491911889:566767..566829TCONS_00011289-exon-sc0000124-1491911889:566767..566829Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1510915933:566767..566829TCONS_00011289-exon-sc0000124-1510915933:566767..566829Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1575043694:566767..566829TCONS_00011289-exon-sc0000124-1575043694:566767..566829Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1491911889:568618..568874TCONS_00011289-exon-sc0000124-1491911889:568618..568874Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1510915933:568618..568874TCONS_00011289-exon-sc0000124-1510915933:568618..568874Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1575043694:568618..568874TCONS_00011289-exon-sc0000124-1575043694:568618..568874Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1491911889:569174..569368TCONS_00011289-exon-sc0000124-1491911889:569174..569368Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1510915933:569174..569368TCONS_00011289-exon-sc0000124-1510915933:569174..569368Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1575043694:569174..569368TCONS_00011289-exon-sc0000124-1575043694:569174..569368Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1491911889:569668..570073TCONS_00011289-exon-sc0000124-1491911889:569668..570073Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1510915933:569668..570073TCONS_00011289-exon-sc0000124-1510915933:569668..570073Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1575043694:569668..570073TCONS_00011289-exon-sc0000124-1575043694:569668..570073Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1491911889:573400..573473TCONS_00011289-exon-sc0000124-1491911889:573400..573473Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1510915933:573400..573473TCONS_00011289-exon-sc0000124-1510915933:573400..573473Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1575043694:573400..573473TCONS_00011289-exon-sc0000124-1575043694:573400..573473Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1491911889:574140..574392TCONS_00011289-exon-sc0000124-1491911889:574140..574392Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1510915933:574140..574392TCONS_00011289-exon-sc0000124-1510915933:574140..574392Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1575043694:574140..574392TCONS_00011289-exon-sc0000124-1575043694:574140..574392Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1491911889:576569..576666TCONS_00011289-exon-sc0000124-1491911889:576569..576666Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1510915933:576569..576666TCONS_00011289-exon-sc0000124-1510915933:576569..576666Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1575043694:576569..576666TCONS_00011289-exon-sc0000124-1575043694:576569..576666Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1491911889:576830..577178TCONS_00011289-exon-sc0000124-1491911889:576830..577178Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1510915933:576830..577178TCONS_00011289-exon-sc0000124-1510915933:576830..577178Clytia hemisphaericaexon
TCONS_00011289-exon-sc0000124-1575043694:576830..577178TCONS_00011289-exon-sc0000124-1575043694:576830..577178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000124supercontigsc0000124:566767..577178 +
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00011289 vs. Swiss-Prot (Human)
Match: NRCAM (Neuronal cell adhesion molecule OS=Homo sapiens GN=NRCAM PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 6.565e-27
Identity = 148/601 (24.63%), Postives = 234/601 (38.94%), Query Frame = 3 
Query:   15 NAIGSPAQSTGTAVVLDKTIINRPIIAQSHEVGWKYAVFYCGCEWDPRLDLRVEWYKEGIRMAKFDDRIYLEDRATGPPRLLYITDLTIQDAGNYSCHAYTKVGNVISEAWASNLLKIKGP----PEPPAAV-----KVSGNCKIRSE----VVITW-KKGEELA----------------LTIQDAGNYSCHAYTKVGNVISEAWASNLLKIKGP------PEPPAAVKVSGNCKIRSEVVITWKKGEELAAETRGFFIEFSTNSSSSLGRWFGGKGDPLMPNSEIRATPGTQDSYDVTQYLVPGANLIFRVFGYSDHLDGRPSRPSEIGKCITSPDTPTMNPVNVTGTSKGQEGKLYVHWRPIADVYYGAPNFYYIVGYRQKAEAGTTPPDFAKERVDKNLTYASEFEIPSTSPNVEYEFYVQSGNEKGLSKVEPAIRSAKSGDKRPDNPPRNVRVADISRFSVQLNWDPVERAT------SYRIKYWNVTDAEALRGRSRRGANDPIVYQYQYSDQPNFGVLINMTAQVEFLASVTAINSGGMNEEESNVVSFKTEPRIPGIPSNVH-VSVYGRSAHINWQPPIHPNGYIEQYEVSWQ 1688
            N +  P +    A  L + I NRP            A+  C     P     +EW+K     A  +D   L +  T     L I        G Y+C A  K+G   +E      L+IK P     +P  AV      VS  CK++ +    + + W K   EL                 ++  D+G Y+C A T + +V + A  S +     P      P PP  ++++   ++   V ++W  G++  +    F IE+  ++    G W           +E+    GTQ +  +   L P  N  FRV   +      PS  SE  + +T    P  NP  V G    +   L + W+P+       P   Y V +RQK        D   E     +   S++ +  T   V Y   VQ+ N+ G +  EPA+    SG+  P   P NVRV  ++    +++WDPV   +       YRI YW    +     R+RR     I+    +      G+L  +     +  +V  +N  G      + V F T   +P  PS++  V+    S  + W PP HPNG + +Y + +Q
Sbjct:  448 NVLAEPPRILTPANTLYQVIANRP------------ALLDCAFFGSPLP--TIEWFKGAKGSALHEDIYVLHENGT-----LEIPVAQKDSTGTYTCVARNKLGMAKNEVH----LEIKDPTWIVKQPEYAVVQRGSMVSFECKVKHDHTLSLTVLWLKDNRELPSDERFTVDKDHLVVADVSDDDSGTYTCVANTTLDSVSASAVLSVVAPTPTPAPVYDVPNPPFDLELTD--QLDKSVQLSWTPGDDNNSPITKFIIEYE-DAMHKPGLWHH--------QTEVS---GTQTTAQLK--LSPYVNYSFRVMAVNSIGKSLPSEASE--QYLTKASEPDKNPTAVEGLG-SEPDNLVITWKPLNGFESNGPGLQYKVSWRQK--------DGDDEWTSVVVANVSKYIVSGTPTFVPYLIKVQALNDMGFAP-EPAVVMGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSK---RNRRHIEKKIL---TFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRV-FNTPEGVPSAPSSLKIVNPTLDSLTLEWDPPSHPNGILTEYTLKYQ 990
The following BLAST results are available for this feature:
BLAST of TCONS_00011289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NRCAM6.565e-2724.63Neuronal cell adhesion molecule OS=Homo sapiens GN... [more]
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