TCONS_00011279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011279
Unique NameTCONS_00011279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011279 ID=TCONS_00011279|Name=TCONS_00011279|organism=Clytia hemisphaerica|type=transcript|length=636bp
GGTTCGAAGTCTCTCTCTTTTCATGTAACTCAAAGATGGAGATGATTTCT
TGTTCCACAATTGTTGCTAAAAATTCATCTACTCAACCAGGATGCCTAAA
ACATTTGTATTTTCCATCATTTGAAGAAATCTGTAATTGCTACATTCGTA
ATTTAAAGGATTACAACGAATTCAACCAATCATATAGATTGTAAGCGACC
AAAACATTATATTGTCGTAACCATCTTTAAAATACTAACCCAATGTACCA
TGGCATCTTTCTTTCATTGCTGGCAATACTGACAGGAAAAGTGGCTGAAA
TCCATACTTTGTCACCGAAATCTTGACAAAGTCCTCCAGTCGTTCAGAGT
GTAATTCATTAAAAGTATCATGTGCATTATTTTAGTTATCCATCCTTAAA
ATACTAATCCTTGGTTTTTCTTAGCTGACCATGCGTCATCTTCAGCTTGA
TTAACTTTCACTTGTGTAGGCTGTTGGTAGGCTGGTGGTTCTTTCCCTGA
TTCAGTACTGTCATCTGTAAAAATAATTGCTTGAACAACTATCACGCTTA
CATTGAATATACCCCTCTTCACAAACCCGGTGGGCTCTTCCCATTGataa
aattggctaaaatatcgTTCCCAGTGGTAAATATTA
Run BLAST on NCBI

transcript from alignment at sc0000124:360043..360760+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011279 ID=TCONS_00011279|Name=TCONS_00011279|organism=Clytia hemisphaerica|type=transcript|length=718bp|location=Sequence derived from alignment at sc0000124:360043..360760+ (Clytia hemisphaerica)
GGTTCGAAGTCTCTCTCTTTTCATGTAACTCAAAGATGGAGATGATTTCT
TGTTCCACAATTGTTGCTAAAAATTCATCTACTCAACCAGGATGCCTAAA
ACATTTgtactgggaagtacattagtgcaggatccgttgattcattaccc
ataaataatacgcacttgatttcacacaTAAAACATTTGTATTTTCCATC
ATTTGAAGAAATCTGTAATTGCTACATTCGTAATTTAAAGGATTACAACG
AATTCAACCAATCATATAGATTGTAAGCGACCAAAACATTATATTGTCGT
AACCATCTTTAAAATACTAACCCAATGTACCATGGCATCTTTCTTTCATT
GCTGGCAATACTGACAGGAAAAGTGGCTGAAATCCATACTTTGTCACCGA
AATCTTGACAAAGTCCTCCAGTCGTTCAGAGTGTAATTCATTAAAAGTAT
CATGTGCATTATTTTAGTTATCCATCCTTAAAATACTAATCCTTGGTTTT
TCTTAGCTGACCATGCGTCATCTTCAGCTTGATTAACTTTCACTTGTGTA
GGCTGTTGGTAGGCTGGTGGTTCTTTCCCTGATTCAGTACTGTCATCTGT
AAAAATAATTGCTTGAACAACTATCACGCTTACATTGAATATACCCCTCT
TCACAAACCCGGTGGGCTCTTCCCATTGataaaattggctaaaatatcgT
TCCCAGTGGTAAATATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006324XLOC_006324Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011279-exon-sc0000124-1491911889:360043..360144TCONS_00011279-exon-sc0000124-1491911889:360043..360144Clytia hemisphaericaexon
TCONS_00011279-exon-sc0000124-1510915933:360043..360144TCONS_00011279-exon-sc0000124-1510915933:360043..360144Clytia hemisphaericaexon
TCONS_00011279-exon-sc0000124-1575043694:360043..360144TCONS_00011279-exon-sc0000124-1575043694:360043..360144Clytia hemisphaericaexon
TCONS_00011279-exon-sc0000124-1491911889:360227..360760TCONS_00011279-exon-sc0000124-1491911889:360227..360760Clytia hemisphaericaexon
TCONS_00011279-exon-sc0000124-1510915933:360227..360760TCONS_00011279-exon-sc0000124-1510915933:360227..360760Clytia hemisphaericaexon
TCONS_00011279-exon-sc0000124-1575043694:360227..360760TCONS_00011279-exon-sc0000124-1575043694:360227..360760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000124supercontigsc0000124:360043..360760 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.10634	0.5408	2.09546	3.79308	0.256094	0.21493	0	0.215871	1.68253	0.582281	0	0.0506303	0.070315	0	2.8216	2.20153	0	0.19757	0	0.173423	0	1.38583	0	0.145555	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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