|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011278 ID=TCONS_00011278|Name=TCONS_00011278|organism=Clytia hemisphaerica|type=transcript|length=1188bp
caaaaaaacatgtatgacGATGCAAagtaaaaatcatttaaaatataTTG
GTTGGAACGGGTAGTGTAGTCACTATAGTGCATGTGCAGTCAACATCTAT
GCTTACAGGGCTATAAATTTTCTATACAGGGTACCTGGCAACTAAACCTT
TTAGAAAGTCGTGTGATTGATTTCACGACGTCCACGGCTAGCAGCATCGG
CTATCTATGATCTGACCGGAATCTTCGTAAGAAGCAGGGATTCGAGCCGA
GAAACCCTGGACTGTGGCATTGACACCTTATACTATTGCCAACAGACGAC
TGATAgataaccaaaatttcatgaacgTACTAAATTTGGATATCATGAGT
GCAGGTACTAAGGAACGATTTTTGTGTGCCCTTTGTGGGGCATCTGGAGT
TGCAATATTTCTATCGTTTACAATTTTAATGGTTGGTGTGTTTCTTGGAC
CACTATGGCTTATAGCGCTGGCTGTGTTTGTTGGATGTTGCTCAATATTC
GTTATCGCATATGTTTTAACCAATAAAAGGAACTTTAGAACTGATACACG
TCATCAGGCGTCTCCAAGGCAACAGAGTGACCATAGTGATTTGTTTTATG
GAGCACCATTTTGTTTGCATAATATTAAATTACCGAGTTATGATGAATCG
ATGCGAGATGAAAACTCATTTTCAGATCGCCCGTCTATAACTTCGTCAAC
ACCTGTTCAATTGTTCTCAGTGGAGCACCAAAGAGTGGATGGTATAAATA
ATCGATCAATTACTCCCCCTCCAGCTTACGAAGAAAGCATCAAAGATAAT
ACTGCTGAAACGGCAATAGATACTTGACCTCAATGCTGTACCCAGAGCTA
CTTGCGCCACTTTTTAAATTTACTGTTGGACGTCGTGATACAATATCTTT
CCAAGCGCCGAACTGGCAATAGATAATTGATCTCAATGTTGTTCCTAGAG
CCACCTGCACCACTTTTGAGTTTTGAGTTTACCGGGACATGAGCTATTAT
GATATCCTTTCGGGAGAGAAAATATCAATCTCGTTACCAGAGTCACTTGG
AcaaattttcgattttactGATGGCAAGAAAATCAAACAAGGACTGGGAA
CgagtttgatttgatttttgatttactGAGTTAACAATAACTTTTTGCAG
CTATGAAAGCCATTtcctatatttttcaaatgttatca Run BLAST on NCBI protein sequence of TCONS_00011278-protein >TCONS_00011278-protein ID=TCONS_00011278-protein|Name=TCONS_00011278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MNVLNLDIMSAGTKERFLCALCGASGVAIFLSFTILMVGVFLGPLWLIAL
AVFVGCCSIFVIAYVLTNKRNFRTDTRHQASPRQQSDHSDLFYGAPFCLH
NIKLPSYDESMRDENSFSDRPSITSSTPVQLFSVEHQRVDGINNRSITPP
PAYEESIKDNTAETAIDT Run BLAST on NCBI transcript from alignment at sc0000124:356672..359280+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011278 ID=TCONS_00011278|Name=TCONS_00011278|organism=Clytia hemisphaerica|type=transcript|length=2609bp|location=Sequence derived from alignment at sc0000124:356672..359280+ (Clytia hemisphaerica)
caaaaaaacatgtatgacGATGCAAagtaaaaatcatttaaaatataTTG
GTTGGAACGGGTAGTGTAGTCACTATAGTGCATGTGCAGTCAACATCTAT
GCTTACAGGGCTATAAATTTTCTATACAGGGTACCTGGCAACTAAACCTT
TTAGAAAGTCGTGTGATTGATTTCACGACGTCCACGGCTAGCAGCATCGG
CTATCTATGATCTGACCGGAATCTTCGTAAGAAGCAGGGATTCGAGCCGA
GAAACCCTGGACTGTGGCATTGACACCTTATACTATTGCCAACAGACGAC
TGATAgataaccaaaatttcatgaacgTACTAAATTTGGATATCATGAGT
GCAGGTACTAAGGAACGATTTTTGTGTGCCCTTTGTGGGGCATCTGGAGT
TGCAATATTTCTATCGTTTACAATTTTAATGGTTGGTGTGTTTCTTGGAC
CACTATGGCTTATAGCGCTGGCTGTGTTTGTTGGATGTTGCTCAATATTC
GTTATCGCATATGTTTTAACCAATAAAAGGAACTTTAGAACTGATACACG
TCATCAGGCGTCTCCAAGGCAACAGAGTGACCATAGTGATTTGTTTTATG
GAGCACCATTTTGTTTGCATAATATTAAATTACCGAGTTATGATGAATCG
ATGCGAGATGAAAACTCATTTTCAGGTAAGAGGAACTATACGTCTATTTA
CGTCCATTTACAATCATGGACTTtttaatgtttgagaaaaacactggaaa
atgcGGGAAAAACAATGTTTAGTGCGAATGGCCTTCCTACTGACTTTTCC
AATGCCCTTCAACATTGTCCCTGGGAGTGGTAAAGCTTATATTCTACTCT
TGTCTCAAAACTTTCGTCCatgattataagaaaaaaatgaaacgatatca
caaaaatttatataatGAAGTCTCTATAACTCCAATGCACTCGGGTTAAT
TGAGAAATTTCGAGATATAAACTAAAGTTTTAGAAGGCAACTTAAAGAAG
GGGCGACTAGAAAACTTGTTCAAAtaaggagacatttgaattATAGAGGG
TCGAATTACAGAAACTCGACTGTAAAAGAATTACCATTTATCATAGAATT
GctcaatttcaaacaatttagTGCCAAATAGTAAAAGttgggtataacgc
ctaaaaCACCTAAAAAACATTATAGTTTTGAAGGATACCGAAATTTTAAG
CTGTAACTGTAAAAgctgtaaaaaaagaaaattctaaaTCCCAACCCATT
GAAAGAGTTGACTTCTGTGTTCAAATTTTCCCCAACTAGCAGTCCGGGGA
GGGGggactcaaggtaaacgacctaccgtacTTGCGGCCCTTGAGGGTCC
CTTTTCCAAGCTTCCTaaagtgcactataagggtcgaaatgagcaaagat
gagaaaaagggaactttaagggtgtaaaattttgaaaatctgaccatgta
ttttgcctaaaaacggtcaaaaatcttcaagaaattgcactgtaagggtc
gatttttcgcccaaatttgGCTAAGTTTTCTTTGTACAGTAAGGATCCGA
TTTCAAAAGCCTGATTTTGGCCTGCACGTATGGTGGCTTTttaatcgagt
gcccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AGTCCCGGGGAGGGGGGGGTGGCTCAAGGTAAACGACGTACCgtacgttc
ggcccttaaggatcccttttccaagctttcaaagtgcactgtaagggtcg
aaatgagcaaagatgagaaaatgTGCACTCTAATGGTGTATTTGAAAATC
TGACCAtgtattttgcctaaaaacggtcaaaaatcttcaagaaagtgcac
tgtaagggtcgatttttctcccaaatttgctcaaatttggctaaattttt
caaaggcctaattttgggccgcatgTATGGGGTCGCTTTTTAATCGAATG
CCCCCCCACGGGTGTGTAGTCTAAATATCTCTTTCTGTCGTTTTAGATCG
CCCGTCTATAACTTCGTCAACACCTGTTCAATTGTTCTCAGTGGAGCACC
AAAGAGTGGATGGTATAAATAATCGATCAATTACTCCCCCTCCAGCTTAC
GAAGAAAGCATCAAAGATAATACTGCTGAAACGGCAATAGATACTTGACC
TCAATGCTGTACCCAGAGCTACTTGCGCCACTTTTTAAATTTACTGTTGG
ACGTCGTGATACAATATCTTTCCAAGCGCCGAACTGGCAATAGATAATTG
ATCTCAATGTTGTTCCTAGAGCCACCTGCACCACTTTTGAGTTTTGAGTT
TACCGGGACATGAGCTATTATGATATCCTTTCGGGAGAGAAAATATCAAT
CTCGTTACCAGAGTCACTTGGAcaaattttcgattttactGATGGCAAGA
AAATCAAACAAGGACTGGGAACgagtttgatttgatttttgatttactGA
GTTAACAATAACTTTTTGCAGCTATGAAAGCCATTtcctatatttttcaa
atgttatca Coding sequence (CDS) from alignment at sc0000124:356672..359280+ >TCONS_00011278 ID=TCONS_00011278|Name=TCONS_00011278|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at sc0000124:356672..359280+ (Clytia hemisphaerica)
atgaacgTACTAAATTTGGATATCATGAGTGCAGGTACTAAGGAACGATT
TTTGTGTGCCCTTTGTGGGGCATCTGGAGTTGCAATATTTCTATCGTTTA
CAATTTTAATGGTTGGTGTGTTTCTTGGACCACTATGGCTTATAGCGCTG
GCTGTGTTTGTTGGATGTTGCTCAATATTCGTTATCGCATATGTTTTAAC
CAATAAAAGGAACTTTAGAACTGATACACGTCATCAGGCGTCTCCAAGGC
AACAGAGTGACCATAGTGATTTGTTTTATGGAGCACCATTTTGTTTGCAT
AATATTAAATTACCGAGTTATGATGAATCGATGCGAGATGAAAACTCATT
TTCAGATCGCCCGTCTATAACTTCGTCAACACCTGTTCAATTGTTCTCAG
TGGAGCACCAAAGAGTGGATGGTATAAATAATCGATCAATTACTCCCCCT
CCAGCTTACGAAGAAAGCATCAAAGATAATACTGCTGAAACGGCAATAGA
TACTTGAatgaacgTACTAAATTTGGATATCATGAGTGCAGGTACTAAGG
AACGATTTTTGTGTGCCCTTTGTGGGGCATCTGGAGTTGCAATATTTCTA
TCGTTTACAATTTTAATGGTTGGTGTGTTTCTTGGACCACTATGGCTTAT
AGCGCTGGCTGTGTTTGTTGGATGTTGCTCAATATTCGTTATCGCATATG
TTTTAACCAATAAAAGGAACTTTAGAACTGATACACGTCATCAGGCGTCT
CCAAGGCAACAGAGTGACCATAGTGATTTGTTTTATGGAGCACCATTTTG
TTTGCATAATATTAAATTACCGAGTTATGATGAATCGATGCGAGATGAAA
ACTCATTTTCAGATCGCCCGTCTATAACTTCGTCAACACCTGTTCAATTG
TTCTCAGTGGAGCACCAAAGAGTGGATGGTATAAATAATCGATCAATTAC
TCCCCCTCCAGCTTACGAAGAAAGCATCAAAGATAATACTGCTGAAACGG
CAATAGATACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011278-exon-sc0000124-1491911889:356672..357346 | TCONS_00011278-exon-sc0000124-1491911889:356672..357346 | Clytia hemisphaerica | exon |
| TCONS_00011278-exon-sc0000124-1510915933:356672..357346 | TCONS_00011278-exon-sc0000124-1510915933:356672..357346 | Clytia hemisphaerica | exon |
| TCONS_00011278-exon-sc0000124-1575043694:356672..357346 | TCONS_00011278-exon-sc0000124-1575043694:356672..357346 | Clytia hemisphaerica | exon |
| TCONS_00011278-exon-sc0000124-1491911889:358768..359280 | TCONS_00011278-exon-sc0000124-1491911889:358768..359280 | Clytia hemisphaerica | exon |
| TCONS_00011278-exon-sc0000124-1510915933:358768..359280 | TCONS_00011278-exon-sc0000124-1510915933:358768..359280 | Clytia hemisphaerica | exon |
| TCONS_00011278-exon-sc0000124-1575043694:358768..359280 | TCONS_00011278-exon-sc0000124-1575043694:358768..359280 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000124 | supercontig | sc0000124:356672..359280 + |
Blast
The following BLAST results are available for this feature:
|
