|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011273 ID=TCONS_00011273|Name=TCONS_00011273|organism=Clytia hemisphaerica|type=transcript|length=1239bp
atgtaggcgttaataatgtgcgcgcgctctttcgcgagcgtgatgcgtga
tggaaggcggtcgtttcagtgtggtttagatccacactgtgacctagtac
tACTTGATGAAGCTACATCTGCGCTAGATTCTGAAAGTGAAAAGATTGTA
CAAGAAGCACTAGACCATGCCATGGAGGGTCGCACGTCAATCGTCATCGC
ACATCGTCTATCAACCATacaaaatgctgacgtcattgCTGTCATACAAG
GTGGAAAAATAGTTGAAATGGGCAACCATTTTGAATTATTAGCAATGAAG
GGTGCTTACCATTTATTAACAGAAGCTCAAATGTAAACTTGTTTCAACGT
TATGTTTTCTTCCTAAATAACAGAAACTATATTATATTGTTTTTGGATAA
AACATTTCTGGAATTATCAGTAATTGCCATCCTCGACAATGTTATTACCG
GGTTATTACAATGAAGATAAGCAAAAAATTCCAACAATGTGCTTCGAAAA
AGTTTCTGTAATATCGGTACCGGTTCTTTACATCGAAGATTTTATAATCG
AAATAGGTAGACCTTCTCAATATGTCACTATCAAGACTTGACACAAGATA
TCAAGTATTCTTTAGACACGGATTGGATAGATTTTGTGGGTTGTCAAGAT
TATGGAACCAAGTACGCGCAAGTTATGTCAAATGCCAATAGAAATTTATT
ATGGAAGtcaaatgaaaacttttaagGGTTCTTTACTAGCTTGAATCCTA
AGATTGTCAGCAGGATGTAAATTTGCATCACCTTTTCATGTAAATAGTGT
ATTATatgagtttttacaagctccatttcatttttcaatgtgAACAACTA
TGAATTCCCTAATTCAAATTGTCCCttaaaagtctctcaaaggggtacaa
aaaccattaaaaagaaaatcgaGTGCTTGTAAGGGTCCAAAAGGCACGAA
ATTggattttttgatgaaaactttgcaaaattttgagaaaatcgagTGAA
ACTCGACaacaattttgagaaaaagtttctctaagggtcccaaaaacgcc
aatttttCCTCTCTCTAATGGTTTATTTATTTGGCTCGGACATGTACATG
TCACCTCGCAAACGGGGGTCCCCTTTAATCGTTTAAGTCGAACTACTCCG
TAAGGGTGGGAGGGTTgaaggggttcgaaataccgttttcccgtcaaatt
ctttgctgaatcccggaatcccgaaaaattgaaaaaaat Run BLAST on NCBI protein sequence of TCONS_00011273-protein >TCONS_00011273-protein ID=TCONS_00011273-protein|Name=TCONS_00011273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MCARSFASVMRDGRRSFQCGLDPHCDLVLLDEATSALDSESEKIVQEALD
HAMEGRTSIVIAHRLSTIQNADVIAVIQGGKIVEMGNHFELLAMKGAYHL
LTEAQM Run BLAST on NCBI transcript from alignment at sc0000124:237749..239528+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011273 ID=TCONS_00011273|Name=TCONS_00011273|organism=Clytia hemisphaerica|type=transcript|length=1780bp|location=Sequence derived from alignment at sc0000124:237749..239528+ (Clytia hemisphaerica)
atgtaggcgttaataatgtgcgcgcgctctttcgcgagcgtgatgcgtga
tggaaggcggtcgtttcagtgtggtttagatccacactgtgacctagtac
tACTTGATGAAGCTACATCTGCGCTAGATTCTGAAAGTGAAAAGGTGAGC
CTTTTAGGTTTTCACAGAAAGTGAAAGTGTTTTGTTCCAAAATAGATTTT
TCTGAGATAACGCTCAGAACTTTGGTTCTTTGAGCACTCTATAGACTCTG
TCGGGGAGCAAGCTCTGCATAGCAGTCTATGCTTACTTATCCGAGCCACA
CTGATGAGTCATGTGAAGGACGAAACACGTGTCTGATGATAGACgtattt
ttaaatataatttttcataatgcataatgcataatgcataagaACTTAGA
GTTTCGGAATAACTGTCCAATTTGGACACAATTATGTACATGGCAGCCTA
TATTAGCTTAAAATTTATGTACATAACAAACCCACACATTTATAAAaccc
aaagggctagatttcGTGTTTCGCTGATGAAAAGTCTGCCGTATTTCATT
TGTTAAGTTATGGGGCTCCACTAGCACTATAAAATTGTATATAACAATAC
CCCAAAAAAAACCAACGAATACCCCCAAAGGTTGAAATCAGGAGATtgca
aaaaatttaatgattttgttttattatttccAAAGATTGTACAAGAAGCA
CTAGACCATGCCATGGAGGGTCGCACGTCAATCGTCATCGCACATCGTCT
ATCAACCATacaaaatgctgacgtcattgCTGTCATACAAGGTGGAAAAA
TAGTTGAAATGGGCAACCATTTTGAATTATTAGCAATGAAGGGTGCTTAC
CATTTATTAACAGAAGCTCAAATGTAAACTTGTTTCAACGTTATGTTTTC
TTCCTAAATAACAGAAACTATATTATATTGTTTTTGGATAAAACATTTCT
GGAATTATCAGTAATTGCCATCCTCGACAATGTTATTACCGGGTTATTAC
AATGAAGATAAGCAAAAAATTCCAACAATGTGCTTCGAAAAAGTTTCTGT
AATATCGGTACCGGTTCTTTACATCGAAGATTTTATAATCGAAATAGGTA
GACCTTCTCAATATGTCACTATCAAGACTTGACACAAGATATCAAGTATT
CTTTAGACACGGATTGGATAGATTTTGTGGGTTGTCAAGATTATGGAACC
AAGTACGCGCAAGTTATGTCAAATGCCAATAGAAATTTATTATGGAAGtc
aaatgaaaacttttaagGGTTCTTTACTAGCTTGAATCCTAAGATTGTCA
GCAGGATGTAAATTTGCATCACCTTTTCATGTAAATAGTGTATTATatga
gtttttacaagctccatttcatttttcaatgtgAACAACTATGAATTCCC
TAATTCAAATTGTCCCttaaaagtctctcaaaggggtacaaaaaccatta
aaaagaaaatcgaGTGCTTGTAAGGGTCCAAAAGGCACGAAATTggattt
tttgatgaaaactttgcaaaattttgagaaaatcgagTGAAACTCGACaa
caattttgagaaaaagtttctctaagggtcccaaaaacgccaatttttCC
TCTCTCTAATGGTTTATTTATTTGGCTCGGACATGTACATGTCACCTCGC
AAACGGGGGTCCCCTTTAATCGTTTAAGTCGAACTACTCCGTAAGGGTGG
GAGGGTTgaaggggttcgaaataccgttttcccgtcaaattctttgctga
atcccggaatcccgaaaaattgaaaaaaat Coding sequence (CDS) from alignment at sc0000124:237749..239528+ >TCONS_00011273 ID=TCONS_00011273|Name=TCONS_00011273|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0000124:237749..239528+ (Clytia hemisphaerica)
atgtgcgcgcgctctttcgcgagcgtgatgcgtgatggaaggcggtcgtt
tcagtgtggtttagatccacactgtgacctagtactACTTGATGAAGCTA
CATCTGCGCTAGATTCTGAAAGTGAAAAGATTGTACAAGAAGCACTAGAC
CATGCCATGGAGGGTCGCACGTCAATCGTCATCGCACATCGTCTATCAAC
CATacaaaatgctgacgtcattgCTGTCATACAAGGTGGAAAAATAGTTG
AAATGGGCAACCATTTTGAATTATTAGCAATGAAGGGTGCTTACCATTTA
TTAACAGAAGCTCAAATGTAAatgtgcgcgcgctctttcgcgagcgtgat
gcgtgatggaaggcggtcgtttcagtgtggtttagatccacactgtgacc
tagtactACTTGATGAAGCTACATCTGCGCTAGATTCTGAAAGTGAAAAG
ATTGTACAAGAAGCACTAGACCATGCCATGGAGGGTCGCACGTCAATCGT
CATCGCACATCGTCTATCAACCATacaaaatgctgacgtcattgCTGTCA
TACAAGGTGGAAAAATAGTTGAAATGGGCAACCATTTTGAATTATTAGCA
ATGAAGGGTGCTTACCATTTATTAACAGAAGCTCAAATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011273-exon-sc0000124-1491911889:237749..237892 | TCONS_00011273-exon-sc0000124-1491911889:237749..237892 | Clytia hemisphaerica | exon |
| TCONS_00011273-exon-sc0000124-1510915933:237749..237892 | TCONS_00011273-exon-sc0000124-1510915933:237749..237892 | Clytia hemisphaerica | exon |
| TCONS_00011273-exon-sc0000124-1575043694:237749..237892 | TCONS_00011273-exon-sc0000124-1575043694:237749..237892 | Clytia hemisphaerica | exon |
| TCONS_00011273-exon-sc0000124-1491911889:238434..239528 | TCONS_00011273-exon-sc0000124-1491911889:238434..239528 | Clytia hemisphaerica | exon |
| TCONS_00011273-exon-sc0000124-1510915933:238434..239528 | TCONS_00011273-exon-sc0000124-1510915933:238434..239528 | Clytia hemisphaerica | exon |
| TCONS_00011273-exon-sc0000124-1575043694:238434..239528 | TCONS_00011273-exon-sc0000124-1575043694:238434..239528 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000124 | supercontig | sc0000124:237749..239528 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
BLAST of TCONS_00011273 vs. Swiss-Prot (Human)
Match: MDR1 (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3) HSP 1 Score: 108.997 bits (271), Expect = 2.819e-25 Identity = 55/83 (66.27%), Postives = 64/83 (77.11%), Query Frame = 1
Query: 82 PHCDLVLLDEATSALDSESEKIVQEALDHAMEGRTSIVIAHRLSTIQNADVIAVIQGGKIVEMGNHFELLAMKGAYHLLTEAQ 330
PH ++LLDEATSALD+ESEK+VQEALD A EGRT IVIAHRLSTIQNAD+I V Q G++ E G H +LLA KG Y + Q
Sbjct: 1194 PH--ILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSMVSVQ 1274 HSP 2 Score: 98.5969 bits (244), Expect = 6.281e-22 Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 1
Query: 94 LVLLDEATSALDSESEKIVQEALDHAMEGRTSIVIAHRLSTIQNADVIAVIQGGKIVEMGNHFELLAMKGAYHLLTEAQ 330
++LLDEATSALD+ESE +VQ ALD A +GRT+IVIAHRLST++NADVIA G IVE GNH EL+ KG Y L Q
Sbjct: 551 ILLLDEATSALDTESEAVVQVALDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEKGIYFKLVTMQ 629
The following BLAST results are available for this feature:
|
