|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011272 ID=TCONS_00011272|Name=TCONS_00011272|organism=Clytia hemisphaerica|type=transcript|length=3722bpRun BLAST on NCBI transcript from alignment at sc0000124:218439..236777+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011272 ID=TCONS_00011272|Name=TCONS_00011272|organism=Clytia hemisphaerica|type=transcript|length=18339bp|location=Sequence derived from alignment at sc0000124:218439..236777+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011272 vs. Swiss-Prot (Human)
Match: MDR1 (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3) HSP 1 Score: 973.77 bits (2516), Expect = 0.000e+0 Identity = 526/1163 (45.23%), Postives = 747/1163 (64.23%), Query Frame = 1
Query: 301 LFRYASTTDWVFMFFASISACINGVLQPVSFIIFGELINDFVD-----------------EDSGKTIDLNKEMEKFGIYYVYIGLGAIVFGYFQNMLWLRASINQAFRIRTLAFESILKQDIGFFDTNDAGELSSRLADGVTKVQNGIGDKIGSLQHAIAMLVGGIIIGFIYGWKLTLVIIAMSPLLFIGAFATGKVIGMITSQEQTSYAKAGSIAEEVLSSIRTVVAFGSERKEIDRYRVNLKDAEKAGIRKGL----STGFAFALFNSTLFGCMALGFWYGGTLIGDGEINAGDLLIVFFSVMIGANQFGQVGPNIEAFSSARGAAYTIFKLIERKPVIDSLTDAGEKT-KIEGDIKFVDCQFSYPSRPDIKILRGLNLNIKPGTTCALVGESGCGKSTTVKLIQRFYDAAGGRVQIDGVDIKRINVKHLRKHIGVVSQEPVLFDASIKKNILMGHPEATEDMVIEAAKNANAHDFISKLPQGYDTNVGEGGAQLSGGQKQRIAIARALVRDPKILLLDEATSALDTGSEAIVQAALDKASLGRTTVIIAHRLSTVKNADSIAVVSAGQVSELGSHKELMDKRGEYFKLVMXXXXXXXXXXXXXXXXGXXXXXXXXXXXXARKMMRSLSQLSNTGSETDQQLVKELIDREITHRKSIRRVKSTVGTQKQVSKLDRQLSQTXXXXXXXXXXXXXXXXXXXSRILKLNAKEWPYIVTGIFFSAIAGTMPVLFAIILAEILQSFAE-NDPQEMEKKMEFWAIMFMVIGLVIGVAFFIAQYLFAKAGEALTTRLREMAFTSLLRQEIGYFDLPQHSTGXXXXXXXXXXXXVQGATSTRLNTLTQVVVTGLSSLIVAFAYSWQLSLLVLAFVPFIAMFGAIQTSLNTSFAGDAQKKLSQAGAISTEAIMQIRTVASLGKEDFFFDKYKSLLMGPTQGSRKGAHIYGIAYGFSIGVMLFSNGACFRLGGYLAERDGLSLSSIVKVIIGIQFGAMTAGQVASFAPDYVKAKTAAGRILALFDRKPAIDSYSTEGI-KNEIKGDITFTDVEFTYPTRQNVPILQKLNIKIPRGRTVAFVGASGCGKSTSVSLLERFYEVAGGEVLIDDIPIKDYNIRALRSQIGIVQQEPVLFDRSIRDNILYGIEDPSQITQEQIEEACRNSNIHHVI 3717
+FRY++ D ++M +++A I+G P+ ++FGE+ + F + D+G ++L ++M ++ YY IG G +V Y Q W A+ Q +IR F +I++Q+IG+FD +D GEL++RL D V+K+ GIGDKIG ++A G I+GF GWKLTLVI+A+SP+L + A K++ T +E +YAKAG++AEEVL++IRTV+AFG ++KE++RY NL++A++ GI+K + S G AF L ++ AL FWYG TL+ GE + G +L VFFSV+IGA GQ P+IEAF++ARGAAY IFK+I+ KP IDS + +G K I+G+++F + FSYPSR ++KIL+GLNL ++ G T ALVG SGCGKSTTV+L+QR YD G V +DG DI+ INV+ LR+ IGVVSQEPVLF +I +NI G T D + +A K ANA+DFI KLP +DT VGE GAQLSGGQKQRIAIARALVR+PKILLLDEATSALDT SEA+VQ ALDKA GRTT++IAHRLSTV+NAD IA G + E G+H ELM ++G YFKLV + E A + + L + +++ L+ R+ + R+S+R G+Q Q DR+LS + + E P RI+KLN EWPY V G+F + I G + FAII ++I+ F +DP+ + ++++F+ +G++ + FF+ + F KAGE LT RLR M F S+LRQ++ +FD P+++TGAL+ RL+ DA+ V+GA +RL +TQ + + +I++F Y WQL+LL+LA VP IA+ G ++ + + A +K+L +G I+TEAI RTV SL +E F Y L P + S + AHI+GI + F+ +M FS CFR G YL +S ++ V + FGAM GQV+SFAPDY KAK +A I+ + ++ P IDSYSTEG+ N ++G++TF +V F YPTR ++P+LQ L++++ +G+T+A VG+SGCGKST V LLERFY+ G+VL+D IK N++ LR+ +GIV QEP+LFD SI +NI YG ++ ++QE+I A + +NIH I
Sbjct: 39 MFRYSNWLDKLYMVVGTLAAIIHGAGLPLMMLVFGEMTDIFANAGNLEDLMSNITNRSDINDTGFFMNLEEDMTRYAYYYSGIGAGVLVAAYIQVSFWCLAAGRQIHKIRKQFFHAIMRQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQSMATFFTGFIVGFTRGWKLTLVILAISPVLGLSAAVWAKILSSFTDKELLAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNKNLEEAKRIGIKKAITANISIGAAFLL----IYASYALAFWYGTTLVLSGEYSIGQVLTVFFSVLIGAFSVGQASPSIEAFANARGAAYEIFKIIDNKPSIDSYSKSGHKPDNIKGNLEFRNVHFSYPSRKEVKILKGLNLKVQSGQTVALVGNSGCGKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLREIIGVVSQEPVLFATTIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQVALDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEKGIYFKLVTM----------------QTAGNEVELENAADESKSEIDALEMSSNDSRSSLI-----RKRSTRRSVR------GSQAQ----DRKLSTKEALDESIPPVSFW-------RIMKLNLTEWPYFVVGVFCAIINGGLQPAFAIIFSKIIGVFTRIDDPETKRQNSNLFSLLFLALGIISFITFFLQGFTFGKAGEILTKRLRYMVFRSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGAIGSRLAVITQNIANLGTGIIISFIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTQEQKFEHMYAQSLQVPYRNSLRKAHIFGITFSFTQAMMYFSYAGCFRFGAYLVAHKLMSFEDVLLVFSAVVFGAMAVGQVSSFAPDYAKAKISAAHIIMIIEKTPLIDSYSTEGLMPNTLEGNVTFGEVVFNYPTRPDIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGKVLLDGKEIKRLNVQWLRAHLGIVSQEPILFDCSIAENIAYG-DNSRVVSQEEIVRAAKEANIHAFI 1158 HSP 2 Score: 445.277 bits (1144), Expect = 5.366e-134 Identity = 239/568 (42.08%), Postives = 351/568 (61.80%), Query Frame = 1
Query: 322 TDWVFMFFASISACINGVLQPVSFIIFGELINDFVDEDSGKTIDLNKEMEKFGIYYVYIGLGAIVFGYFQNMLWLRASINQAFRIRTLAFESILKQDIGFFD--TNDAGELSSRLADGVTKVQNGIGDKIGSLQHAIAMLVGGIIIGFIYGWKLTLVIIAMSPLLFIGAFATGKVIGMITSQEQTSYAKAGSIAEEVLSSIRTVVAFGSERKEIDRYRVNLKDAEKAGIRKGLSTGFAFALFNSTLFGCMALGFWYGGTLIGDGEINAGDLLIVFFSVMIGANQFGQVGPNIEAFSSARGAAYTIFKLIERKPVIDSLTDAG-EKTKIEGDIKFVDCQFSYPSRPDIKILRGLNLNIKPGTTCALVGESGCGKSTTVKLIQRFYDAAGGRVQIDGVDIKRINVKHLRKHIGVVSQEPVLFDASIKKNILMGHPE--ATEDMVIEAAKNANAHDFISKLPQGYDTNVGEGGAQLSGGQKQRIAIARALVRDPKILLLDEATSALDTGSEAIVQAALDKASLGRTTVIIAHRLSTVKNADSIAVVSAGQVSELGSHKELMDKRGEYFKLV 2010
T+W + A ING LQP IIF ++I F D +T N + F + ++ +G+ + + + Q + +A R+R + F S+L+QD+ +FD N G L++RLA+ +V+ IG ++ + IA L GIII FIYGW+LTL+++A+ P++ I K++ +++ +G IA E + + RTVV+ E+K Y +L+ + +RK G F+ + ++ A F +G L+ ++ D+L+VF +V+ GA GQV ++ A+ +A I +IE+ P+IDS + G +EG++ F + F+YP+RPDI +L+GL+L +K G T ALVG SGCGKST V+L++RFYD G+V +DG +IKR+NV+ LR H+G+VSQEP+LFD SI +NI G +++ ++ AAK AN H FI LP Y T VG+ G QLSGGQKQRIAIARALVR P ILLLDEATSALDT SE +VQ ALDKA GRT ++IAHRLST++NAD I V G+V E G+H++L+ ++G YF +V
Sbjct: 706 TEWPYFVVGVFCAIINGGLQPAFAIIFSKIIGVFTRIDDPETKRQNSNL--FSLLFLALGIISFITFFLQGFTFGKAGEILTKRLRYMVFRSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGAIGSRLAVITQNIANLGTGIIISFIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTQEQKFEHMYAQSLQVPYRNSLRKAHIFGITFSFTQAMMYFSYAGCFRFGAYLVAHKLMSFEDVLLVFSAVVFGAMAVGQVSSFAPDYAKAKISAAHIIMIIEKTPLIDSYSTEGLMPNTLEGNVTFGEVVFNYPTRPDIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGKVLLDGKEIKRLNVQWLRAHLGIVSQEPILFDCSIAENIAYGDNSRVVSQEEIVRAAKEANIHAFIESLPNKYSTKVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSMV 1271 HSP 3 Score: 226.483 bits (576), Expect = 4.276e-60 Identity = 151/470 (32.13%), Postives = 240/470 (51.06%), Query Frame = 1
Query: 2374 YIVTGIFFSAIAGTMPVLFAIILAEILQSFAE-----------------NDP---QEMEKKMEFWAIMFMVIGLVIGVAFFIAQYLFAKAGEALTTRLREMAFTSLLRQEIGYFDLPQHSTGXXXXXXXXXXXXVQGATSTRLNTLTQVVVTGLSSLIVAFAYSWQLSLLVLAFVPFIAMFGAIQTSLNTSFAGDAQKKLSQAGAISTEAIMQIRTVASLGKEDFFFDKYKSLLMGPTQGSRKGAHIYGIAYGFSIGVMLFSNGACFRLGGYLAERDGLSLSSIVKVIIGIQFGAMTAGQVASFAPDYVKAKTAAGRILALFDRKPAIDSYSTEGIK-NEIKGDITFTDVEFTYPTRQNVPILQKLNIKIPRGRTVAFVGASGCGKSTSVSLLERFYEVAGGEVLIDDIPIKDYNIRALRSQIGIVQQEPVLFDRSIRDNILYGIEDPSQITQEQIEEACRNSNIHHVIM 3720
Y+V G + I G L ++ E+ FA ND +E+ M +A + IG + VA +I + A ++R+ F +++RQEIG+FD+ H G L+ RL+ D S + ++ Q + T + IV F W+L+L++LA P + + A+ + +SF ++AGA++ E + IRTV + G + ++Y L + K A I+ G + ++ S F G L S+ ++ V + GA + GQ + + A+ AA I + D KP+IDSYS G K + IKG++ F +V F+YP+R+ V IL+ LN+K+ G+TVA VG SGCGKST+V L++R Y+ G V +D I+ N+R LR IG+V QEPVLF +I +NI YG E+ +T ++IE+A + +N + IM
Sbjct: 50 YMVVGTLAAIIHGAGLPLMMLVFGEMTDIFANAGNLEDLMSNITNRSDINDTGFFMNLEEDMTRYAYYYSGIGAGVLVAAYIQVSFWCLAAGRQIHKIRKQFFHAIMRQEIGWFDV--HDVGELNTRLTDDVSKINEGIGDKIGMFFQSMATFFTGFIVGFTRGWKLTLVILAISPVLGLSAAVWAKILSSFTDKELLAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNKNLEEAKRIGIKKAITANISIGAAFLLIYASYALAFWYGTTLVLSGEYSIGQVLTVFFSVLIGAFSVGQASPSIEAFANARGAAYEIFKIIDNKPSIDSYSKSGHKPDNIKGNLEFRNVHFSYPSRKEVKILKGLNLKVQSGQTVALVGNSGCGKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLREIIGVVSQEPVLFATTIAENIRYGREN---VTMDEIEKAVKEANAYDFIM 514 The following BLAST results are available for this feature:
BLAST of TCONS_00011272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.