TCONS_00011260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011260
Unique NameTCONS_00011260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011260 ID=TCONS_00011260|Name=TCONS_00011260|organism=Clytia hemisphaerica|type=transcript|length=349bp
GCGCCAGAGGCGATCCTGGAAAATTATGAAAACTATGCATGATTGACGTT
CAACCTGAAGACACGTTTCCCTAAGATCAACACTGAAATTCAACTGTAAA
TGATATAAACAGATTTGAGAGAGCACAAGGATGATATATTTTGTTGGCAA
TAtgttttttgatgagaaaatgcacttttattgacttaaagCCATGTTTA
CGGGTTGTACGTACGCAGAGTTGACGCAAAATACTTGGAGATTCCCGGAG
CACGTGGaaggccatttttttcaaaaaacttggactattttagtatttcc
agtaccttttcaacattaaaagtTATGTGTCAATCCATTTTGGCCAACC
Run BLAST on NCBI

transcript from alignment at sc0000122:530570..530918

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011260 ID=TCONS_00011260|Name=TCONS_00011260|organism=Clytia hemisphaerica|type=transcript|length=349bp|location=Sequence derived from alignment at sc0000122:530570..530918 (Clytia hemisphaerica)
GGTTGGCCAAAATGGATTGACACATAacttttaatgttgaaaaggtactg
gaaatactaaaatagtccaagttttttgaaaaaaatggccttCCACGTGC
TCCGGGAATCTCCAAGTATTTTGCGTCAACTCTGCGTACGTACAACCCGT
AAACATGGctttaagtcaataaaagtgcattttctcatcaaaaaacaTAT
TGCCAACAAAATATATCATCCTTGTGCTCTCTCAAATCTGTTTATATCAT
TTACAGTTGAATTTCAGTGTTGATCTTAGGGAAACGTGTCTTCAGGTTGA
ACGTCAATCATGCATAGTTTTCATAATTTTCCAGGATCGCCTCTGGCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006311XLOC_006311Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011260-exon-sc0000122-1491911889:530570..530918TCONS_00011260-exon-sc0000122-1491911889:530570..530918Clytia hemisphaericaexon
TCONS_00011260-exon-sc0000122-1510915933:530570..530918TCONS_00011260-exon-sc0000122-1510915933:530570..530918Clytia hemisphaericaexon
TCONS_00011260-exon-sc0000122-1575043694:530570..530918TCONS_00011260-exon-sc0000122-1575043694:530570..530918Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:530570..530918 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.4919	15.3163	5.89612	2.76949	28.8514	26.8326	24.8364	27.6723	29.1715	33.9693	47.9654	30.0005	22.9433	24.1883	12.2481	17.3267	10.3625	13.4444	20.9758	19.2593	7.7681	16.4983	7.69238	11.9102	9.15687	9.82666	25.8972	13.5778	10.4531	11.403
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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