TCONS_00011253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011253
Unique NameTCONS_00011253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011253 ID=TCONS_00011253|Name=TCONS_00011253|organism=Clytia hemisphaerica|type=transcript|length=569bp
CCCACTCGTTTGCTTCACGAAAGTTCGGGAAAGTCATTGTCGGTAAAATC
TCGATCTTCCCTTGTCGCTCCATTTCTTTCACCTTACCATTTCGAACATG
TGGAAAGCGCATATAACGTTCAGCCGTACAAATTGTTATATAGCCGTTTT
TACGAACTAATTgagtaagggttggaaaaacaTCATATCCTGGATGAGAt
tgtgaaataaaaaaacagccaGATGAAATCAATAAATCATAATGTTTTTG
CTTTATAACAGAATGATCATCAAAACTTCCCACTTGGTATAAATTTCGAA
AGATATAAGTTTTCTCTGCAGATTCGAGAAACGTTTCGTTAGGCTCTGAC
CCATCAATATGACCATAACCTCGGAACGCAAAACTAGAAGCTATACGACC
AGAACCACATCCATAGTCtaaaatggaaatatttttgtttccttggtaCC
ATTCTTGAGCCTTTTGGTAAATCAACAAAGCGTCTTGATATTCTGTTTTC
GCATACATCTCATCATAATTTTGCGCATATTGACTGTACAAATCTTGTTG
TTGGTGATATTCCTCGGAT
Run BLAST on NCBI

protein sequence of TCONS_00011253-protein

>TCONS_00011253-protein ID=TCONS_00011253-protein|Name=TCONS_00011253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
SEEYHQQQDLYSQYAQNYDEMYAKTEYQDALLIYQKAQEWYQGNKNISIL
DYGCGSGRIASSFAFRGYGHIDGSEPNETFLESAEKTYIFRNLYQVGSFD
DHSVIKQKHYDLLISSGCFFISQSHPGYDVFPTLTQLVRKNGYITICTAE
RYMRFPHVRNGKVKEMERQGKIEILPTMTFPNFREANEW
Run BLAST on NCBI

transcript from alignment at sc0000122:421744..422312

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011253 ID=TCONS_00011253|Name=TCONS_00011253|organism=Clytia hemisphaerica|type=transcript|length=569bp|location=Sequence derived from alignment at sc0000122:421744..422312 (Clytia hemisphaerica)
ATCCGAGGAATATCACCAACAACAAGATTTGTACAGTCAATATGCGCAAA
ATTATGATGAGATGTATGCGAAAACAGAATATCAAGACGCTTTGTTGATT
TACCAAAAGGCTCAAGAATGGtaccaaggaaacaaaaatatttccatttt
aGACTATGGATGTGGTTCTGGTCGTATAGCTTCTAGTTTTGCGTTCCGAG
GTTATGGTCATATTGATGGGTCAGAGCCTAACGAAACGTTTCTCGAATCT
GCAGAGAAAACTTATATCTTTCGAAATTTATACCAAGTGGGAAGTTTTGA
TGATCATTCTGTTATAAAGCAAAAACATTATGATTTATTGATTTCATCtg
gctgtttttttatttcacaaTCTCATCCAGGATATGAtgtttttccaacc
cttactcAATTAGTTCGTAAAAACGGCTATATAACAATTTGTACGGCTGA
ACGTTATATGCGCTTTCCACATGTTCGAAATGGTAAGGTGAAAGAAATGG
AGCGACAAGGGAAGATCGAGATTTTACCGACAATGACTTTCCCGAACTTT
CGTGAAGCAAACGAGTGGG

Coding sequence (CDS) from alignment at sc0000122:421744..422312

>TCONS_00011253 ID=TCONS_00011253|Name=TCONS_00011253|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at sc0000122:421744..422312 (Clytia hemisphaerica)
TCCGAGGAATATCACCAACAACAAGATTTGTACAGTCAATATGCGCAAAA
TTATGATGAGATGTATGCGAAAACAGAATATCAAGACGCTTTGTTGATTT
ACCAAAAGGCTCAAGAATGGtaccaaggaaacaaaaatatttccatttta
GACTATGGATGTGGTTCTGGTCGTATAGCTTCTAGTTTTGCGTTCCGAGG
TTATGGTCATATTGATGGGTCAGAGCCTAACGAAACGTTTCTCGAATCTG
CAGAGAAAACTTATATCTTTCGAAATTTATACCAAGTGGGAAGTTTTGAT
GATCATTCTGTTATAAAGCAAAAACATTATGATTTATTGATTTCATCtgg
ctgtttttttatttcacaaTCTCATCCAGGATATGAtgtttttccaaccc
ttactcAATTAGTTCGTAAAAACGGCTATATAACAATTTGTACGGCTGAA
CGTTATATGCGCTTTCCACATGTTCGAAATGGTAAGGTGAAAGAAATGGA
GCGACAAGGGAAGATCGAGATTTTACCGACAATGACTTTCCCGAACTTTC
GTGAAGCAAACGAGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006304XLOC_006304Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011253-proteinTCONS_00011253-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011253-exon-sc0000122-1491911889:421744..422312TCONS_00011253-exon-sc0000122-1491911889:421744..422312Clytia hemisphaericaexon
TCONS_00011253-exon-sc0000122-1510915933:421744..422312TCONS_00011253-exon-sc0000122-1510915933:421744..422312Clytia hemisphaericaexon
TCONS_00011253-exon-sc0000122-1575043694:421744..422312TCONS_00011253-exon-sc0000122-1575043694:421744..422312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:421744..422312 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.315056	4.68792	2.96539	4.56751	1.64585	2.49609	4.5287	2.55614	2.65458	3.24565	6.48574	2.2934	1.21324	0.5238	0.876991	0.190566	0.139427	0.112995	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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