TCONS_00011251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011251
Unique NameTCONS_00011251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011251 ID=TCONS_00011251|Name=TCONS_00011251|organism=Clytia hemisphaerica|type=transcript|length=300bp
AAAAAACGCAAGTACTGTTAAAGGCCTTAAAAGCAAAAtctaagaaaatg
aagaaagtgAAAACGAGATAATTTGTTGAGACAGGCTTgtaccatggagg
tataaagaaacaggagaagtatgctattgtaaccatgctcgccctacgat
taaaaaaattacgaggtatgcatgctcataaNTGAGATAAAtagtaaatt
ttttaaattttcgccAATATCCAGCGACTGTGACTTTAATGAGCCTCTAC
GACACTCCAGGATTACCCGCAGCTGAAGCACCACCTGACCTCAAATTGTG
Run BLAST on NCBI

transcript from alignment at sc0000122:417547..417846

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011251 ID=TCONS_00011251|Name=TCONS_00011251|organism=Clytia hemisphaerica|type=transcript|length=300bp|location=Sequence derived from alignment at sc0000122:417547..417846 (Clytia hemisphaerica)
CACAATTTGAGGTCAGGTGGTGCTTCAGCTGCGGGTAATCCTGGAGTGTC
GTAGAGGCTCATTAAAGTCACAGTCGCTGGATATTggcgaaaatttaaaa
aatttactaTTTATCTCANttatgagcatgcatacctcgtaattttttta
atcgtagggcgagcatggttacaatagcatacttctcctgtttctttata
cctccatggtacAAGCCTGTCTCAACAAATTATCTCGTTTTcactttctt
cattttcttagaTTTTGCTTTTAAGGCCTTTAACAGTACTTGCGTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006302XLOC_006302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011251-exon-sc0000122-1491911889:417547..417846TCONS_00011251-exon-sc0000122-1491911889:417547..417846Clytia hemisphaericaexon
TCONS_00011251-exon-sc0000122-1510915933:417547..417846TCONS_00011251-exon-sc0000122-1510915933:417547..417846Clytia hemisphaericaexon
TCONS_00011251-exon-sc0000122-1575043694:417547..417846TCONS_00011251-exon-sc0000122-1575043694:417547..417846Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:417547..417846 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15433	0.786634	1.02697	0.652664	0.00111007	1.1407	2.79597	2.52621	4.44023	3.23167	2.68389	2.73734	0.636729	1.60721	2.2094	0.829709	0.396141	1.25374	0	3.30956	0.604784	0	0	0.0236843	0	0	0	0	2.04891	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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