TCONS_00011250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011250
Unique NameTCONS_00011250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011250 ID=TCONS_00011250|Name=TCONS_00011250|organism=Clytia hemisphaerica|type=transcript|length=478bp
TTGAAAATGACCCGATCGCGTAACCCGAAATAGGATGATAAATAGTTCGT
AAAGCTTCATACACCGGAAAGGACTTCCCAGATTCAAATTGAAACATTAG
AATGAAAGTTACGTGCTTTTCTTGAGAAGGCAACGAGTTTACTTCGGTAT
ATACTTTTGTCCAATCTGTCCATTTTTAATTTCGCcacctagcgaaagta
ttacgatactGGCTTTGGCGGTACGGAATAAAATTTAGAAACCGAAAGTG
GTTGACACGGTGTAATAAACATTTAATCATTCTCTAATATTGTAAAGAAT
ATCGCTAAAAACTAATGTGATCGAACatcaaattaataaataatTGTGCA
CAATGTCAGCATATCTGATTTATTATAAGcacctactttataagaatcaa
atcaataactcttgataaactgTGATAAACCTTAAAACATCGACTTTAAA
GCTTGATATTTCGCAAACgagaaaaaat
Run BLAST on NCBI

transcript from alignment at sc0000122:416599..417076

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011250 ID=TCONS_00011250|Name=TCONS_00011250|organism=Clytia hemisphaerica|type=transcript|length=478bp|location=Sequence derived from alignment at sc0000122:416599..417076 (Clytia hemisphaerica)
attttttctcGTTTGCGAAATATCAAGCTTTAAAGTCGATGTTTTAAGGT
TTATCAcagtttatcaagagttattgatttgattcttataaagtaggtgC
TTATAATAAATCAGATATGCTGACATTGTGCACAattatttattaatttg
atGTTCGATCACATTAGTTTTTAGCGATATTCTTTACAATATTAGAGAAT
GATTAAATGTTTATTACACCGTGTCAACCACTTTCGGTTTCTAAATTTTA
TTCCGTACCGCCAAAGCCagtatcgtaatactttcgctaggtgGCGAAAT
TAAAAATGGACAGATTGGACAAAAGTATATACCGAAGTAAACTCGTTGCC
TTCTCAAGAAAAGCACGTAACTTTCATTCTAATGTTTCAATTTGAATCTG
GGAAGTCCTTTCCGGTGTATGAAGCTTTACGAACTATTTATCATCCTATT
TCGGGTTACGCGATCGGGTCATTTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006301XLOC_006301Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011250-exon-sc0000122-1491911889:416599..417076TCONS_00011250-exon-sc0000122-1491911889:416599..417076Clytia hemisphaericaexon
TCONS_00011250-exon-sc0000122-1510915933:416599..417076TCONS_00011250-exon-sc0000122-1510915933:416599..417076Clytia hemisphaericaexon
TCONS_00011250-exon-sc0000122-1575043694:416599..417076TCONS_00011250-exon-sc0000122-1575043694:416599..417076Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:416599..417076 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.33711	1.88195	0.743141	0.266996	0	0	0	0.158742	0	0.275327	0	0.0946313	0.736218	0.323608	3.58385	3.31177	0.864784	1.01804	0	0	0.276501	0.397678	1.48862	1.47414	0.171824	0	0.46521	0.591241	5.91123	8.19227
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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