TCONS_00011249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011249
Unique NameTCONS_00011249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011249 ID=TCONS_00011249|Name=TCONS_00011249|organism=Clytia hemisphaerica|type=transcript|length=492bp
tatattttgaccgatatTGTAGTCAGAATGAAAATGCTCTCTAATAAAAT
CATAGcttaaaagttaaaagttaGGACAAAAATCTCGTGTCAAAATGGAG
TGCACTAACTGAAAACGTCGTCATTCTTATCACGACTGATAAGTCTGTGa
agataaaacaaaaataaggaGACAAGTTAGAGGTTATTTAAAAAAGTCAT
GTTCAATagtattatttttcaaagttatttttcaaaatttattttctaaa
attacAAGAAAACATATTTCATCATATCTTATTTAACAAGGTGTCTGTAC
CAAAAATTGAACGAAATACAGAAGAACTTAATAGACCCCAGGCATACTTT
TAAGGATCGAAACGTCTagaaaattttggtccattaaccttttcagcccg
gcggacgtgtatacacgtcgagcatacgttccggcagacgtgtatacacg
tctttttgacatagtgatcttctaagctatatttctCCCTNN
Run BLAST on NCBI

transcript from alignment at sc0000122:394437..394928

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011249 ID=TCONS_00011249|Name=TCONS_00011249|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at sc0000122:394437..394928 (Clytia hemisphaerica)
NNAGGGagaaatatagcttagaagatcactatgtcaaaaagacgtgtata
cacgtctgccggaacgtatgctcgacgtgtatacacgtccgccgggctga
aaaggttaatggaccaaaattttctAGACGTTTCGATCCTTAAAAGTATG
CCTGGGGTCTATTAAGTTCTTCTGTATTTCGTTCAATTTTTGGTACAGAC
ACCTTGTTAAATAAGATATGATGAAATATGTTTTCTTgtaattttagaaa
ataaattttgaaaaataactttgaaaaataatactATTGAACATGACTTT
TTTAAATAACCTCTAACTTGTCtccttatttttgttttatcttCACAGAC
TTATCAGTCGTGATAAGAATGACGACGTTTTCAGTTAGTGCACTCCATTT
TGACACGAGATTTTTGTCCtaacttttaacttttaagCTATGATTTTATT
AGAGAGCATTTTCATTCTGACTACAatatcggtcaaaatata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006300XLOC_006300Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011249-exon-sc0000122-1491911889:394437..394928TCONS_00011249-exon-sc0000122-1491911889:394437..394928Clytia hemisphaericaexon
TCONS_00011249-exon-sc0000122-1510915933:394437..394928TCONS_00011249-exon-sc0000122-1510915933:394437..394928Clytia hemisphaericaexon
TCONS_00011249-exon-sc0000122-1575043694:394437..394928TCONS_00011249-exon-sc0000122-1575043694:394437..394928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:394437..394928 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.9356	22.483	32.6275	39.8553	18.0893	11.3554	14.1833	16.1451	9.82462	8.24377	9.32192	7.18023	6.85039	6.66711	7.99738	7.51261	7.95727	10.1434	6.83588	7.46442	10.2469	10.1334	13.6552	13.307	5.92226	8.99531	18.3767	11.5134	15.8464	10.9159
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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