TCONS_00011247 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011247
Unique NameTCONS_00011247
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011247 ID=TCONS_00011247|Name=TCONS_00011247|organism=Clytia hemisphaerica|type=transcript|length=518bp
CGCAAAATTTTTCTATTTTTCTCCTTTTTAGTCCCGCTAAAGGGTCCGAG
GGTCAAGAGTCGGGCGGGACATACCCGTCAGCTCGCAACCATATTAcccc
ccccccgggcaaacctccaaatgcttttcttcttgatgctcagcaattga
gggaatgatcaagggtaagtggagaaatccagggaaatgAGTGGTGCCTT
CCCCTACCTTCGCGGATGGACAGCTatagaaaagggagccttctaGTCAC
CCTCAGCTGTGTTCGCAAACTTATCTAAATAGAGCAGAAAAATACGGAAA
CTTTGATCAACGTTAGATTGTGGTAGACTTGTAGTATAACCTACCTTGTA
TCAATGGAAaaacttaaatgttttttcctAAACCAGAGAGAAAATTAGCA
ACTGTTAgctcaaatcaaatttattttccgtAAAGACAACAAAGGATTCC
AACTGAAAATACTAAGAGACATACAATGACTACTCAGTCTTATAGAAGTC
TTAATTCATCTAAAAGCC
Run BLAST on NCBI

transcript from alignment at sc0000122:365219..365736

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011247 ID=TCONS_00011247|Name=TCONS_00011247|organism=Clytia hemisphaerica|type=transcript|length=518bp|location=Sequence derived from alignment at sc0000122:365219..365736 (Clytia hemisphaerica)
GGCTTTTAGATGAATTAAGACTTCTATAAGACTGAGTAGTCATTGTATGT
CTCTTAGTATTTTCAGTTGGAATCCTTTGTTGTCTTTacggaaaataaat
ttgatttgagcTAACAGTTGCTAATTTTCTCTCTGGTTTaggaaaaaaca
tttaagtttTTCCATTGATACAAGGTAGGTTATACTACAAGTCTACCACA
ATCTAACGTTGATCAAAGTTTCCGTATTTTTCTGCTCTATTTAGATAAGT
TTGCGAACACAGCTGAGGGTGACtagaaggctcccttttctatAGCTGTC
CATCCGCGAAGGTAGGGGAAGGCACCACTcatttccctggatttctccac
ttacccttgatcattccctcaattgctgagcatcaagaagaaaagcattt
ggaggtttgcccggggggggggTAATATGGTTGCGAGCTGACGGGTATGT
CCCGCCCGACTCTTGACCCTCGGACCCTTTAGCGGGACTAAAAAGGAGAA
AAATAGAAAAATTTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006298XLOC_006298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011247-exon-sc0000122-1491911889:365219..365736TCONS_00011247-exon-sc0000122-1491911889:365219..365736Clytia hemisphaericaexon
TCONS_00011247-exon-sc0000122-1510915933:365219..365736TCONS_00011247-exon-sc0000122-1510915933:365219..365736Clytia hemisphaericaexon
TCONS_00011247-exon-sc0000122-1575043694:365219..365736TCONS_00011247-exon-sc0000122-1575043694:365219..365736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:365219..365736 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.129999	0	0	0	0.147612	0.552772	0.870769	2.99608	2.5591	0.76466	0	0.158601	0	0	0	0	0	0	0.111009	0.162439	0.263289	0.119684	0	0	0	0	0.254871	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011247 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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