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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011245 ID=TCONS_00011245|Name=TCONS_00011245|organism=Clytia hemisphaerica|type=transcript|length=1230bp
TTCTGGCTCACCCGTAGAACACAGAATAtctaacaaaaatattttgatat
aacATAATTTATTAGGAATTGTTTCTATTCTATTTTTGAGGGGAAGTGGT
CCCGAAATCTTTCCTCGTAAAAAGATTACCAATAAACCACTACTTTATGT
GAATAAAATCAttattaaataaaatattacAAAACTGGCACAAAATAAGG
ATGACTTATGAAAAGTGATAAGCTCTTCCACGATCACATAAACAAAAATA
CCTGAAAATAGTTTTTATCGTAATTTGAGAGATATACATCTATCATCAAC
CCTTTGCAACGTGGTTGGCTTTTGAGGGGACTGGTAAGTAGGGCACATAT
CTTTTCGGTGACATTTCCATCCGTGAATGAGACAATTTACCAGTAACTCT
ACTGTATAGCTTTTTTAAAACCTCTGAATCAAGGGCATCTTTCACTTTTT
CAAATTAGTACTTACTACATTCTTTATAATGTCGCCGAAAAGAAATGCCC
TTAACTCTACACCATTCACCTAACAAGTCGACTGCAGCTGCCAAGGATTG
TTAATTAAATCTGTATTAAATAGGTTACTAAAAGATTCAAGTTTTCATTC
ATTGTACCCCATACCTACATAAGGTCGAAAAACTGTGTTTTAACAATATC
TCTGATCCATAAACAAACTATTTCCCTCGATTATTCAAATCGGACAACCG
AAATTTTCCCGATTCCGATAACTTCCAATTTGGTAAACTATTGTTCCTGG
AGCTTGTGCGTGATGTCATTGTCGAAGATCTTCGACTCGATCTCCCAGTA
TGAATAGCGGGTAATTTGTCTCGCTCAACCgaactttttatttcttttgt
ctTACTTTGTGGTCTGAATGAATGACAACAAGTTTGACTTTGTATGTCCC
GTAACATAGGAAGAATAACATTGTAATTGAACTTGATTGGTGGATTTTTT
ATTGGGACGCTATGTACAGGGGTATTTATGTTCGCTAGTTCGATGGGAGG
TGAGGGCGTGCTTTTGGTAACCGAGGGCGTGCTTTTGATAACCGCGTCTT
CATGGTTTTCGTCGATCACTGAAAGTCCGCGTTGTTTCTTCGCTGACCTG
TTTGACTTTTgctttcgcttgttttttcgtTTCACGTTGTCACCCATACT
GTTCGATTGGTTTTCATCTGGATGTTTTGTAGGAGTTTAGGTattctttt
ttctaagaatACATATTTATTCTTTGGCTG Run BLAST on NCBI protein sequence of TCONS_00011245-protein >TCONS_00011245-protein ID=TCONS_00011245-protein|Name=TCONS_00011245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MGDNVKRKNKRKQKSNRSAKKQRGLSVIDENHEDAVIKSTPSVTKSTPSP
PIELANINTPVHSVPIKNPPIKFNYNVILPMLRDIQSQTCCHSFRPQSKT
KEIKSSVERDKLPAIHTGRSSRRSSTMTSRTSSRNNSLPNWKLSESGKFR
LSDLNNRGK Run BLAST on NCBI transcript from alignment at sc0000122:309963..311192 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011245 ID=TCONS_00011245|Name=TCONS_00011245|organism=Clytia hemisphaerica|type=transcript|length=1230bp|location=Sequence derived from alignment at sc0000122:309963..311192 (Clytia hemisphaerica)
CAGCCAAAGAATAAATATGTattcttagaaaaaagaatACCTAAACTCCT
ACAAAACATCCAGATGAAAACCAATCGAACAGTATGGGTGACAACGTGAA
acgaaaaaacaagcgaaagcAAAAGTCAAACAGGTCAGCGAAGAAACAAC
GCGGACTTTCAGTGATCGACGAAAACCATGAAGACGCGGTTATCAAAAGC
ACGCCCTCGGTTACCAAAAGCACGCCCTCACCTCCCATCGAACTAGCGAA
CATAAATACCCCTGTACATAGCGTCCCAATAAAAAATCCACCAATCAAGT
TCAATTACAATGTTATTCTTCCTATGTTACGGGACATACAAAGTCAAACT
TGTTGTCATTCATTCAGACCACAAAGTAagacaaaagaaataaaaagttc
GGTTGAGCGAGACAAATTACCCGCTATTCATACTGGGAGATCGAGTCGAA
GATCTTCGACAATGACATCACGCACAAGCTCCAGGAACAATAGTTTACCA
AATTGGAAGTTATCGGAATCGGGAAAATTTCGGTTGTCCGATTTGAATAA
TCGAGGGAAATAGTTTGTTTATGGATCAGAGATATTGTTAAAACACAGTT
TTTCGACCTTATGTAGGTATGGGGTACAATGAATGAAAACTTGAATCTTT
TAGTAACCTATTTAATACAGATTTAATTAACAATCCTTGGCAGCTGCAGT
CGACTTGTTAGGTGAATGGTGTAGAGTTAAGGGCATTTCTTTTCGGCGAC
ATTATAAAGAATGTAGTAAGTACTAATTTGAAAAAGTGAAAGATGCCCTT
GATTCAGAGGTTTTAAAAAAGCTATACAGTAGAGTTACTGGTAAATTGTC
TCATTCACGGATGGAAATGTCACCGAAAAGATATGTGCCCTACTTACCAG
TCCCCTCAAAAGCCAACCACGTTGCAAAGGGTTGATGATAGATGTATATC
TCTCAAATTACGATAAAAACTATTTTCAGGTATTTTTGTTTATGTGATCG
TGGAAGAGCTTATCACTTTTCATAAGTCATCCTTATTTTGTGCCAGTTTT
gtaatattttatttaataaTGATTTTATTCACATAAAGTAGTGGTTTATT
GGTAATCTTTTTACGAGGAAAGATTTCGGGACCACTTCCCCTCAAAAATA
GAATAGAAACAATTCCTAATAAATTATgttatatcaaaatatttttgtta
gaTATTCTGTGTTCTACGGGTGAGCCAGAA Coding sequence (CDS) from alignment at sc0000122:309963..311192 >TCONS_00011245 ID=TCONS_00011245|Name=TCONS_00011245|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0000122:309963..311192 (Clytia hemisphaerica)
ATGGGTGACAACGTGAAacgaaaaaacaagcgaaagcAAAAGTCAAACAG
GTCAGCGAAGAAACAACGCGGACTTTCAGTGATCGACGAAAACCATGAAG
ACGCGGTTATCAAAAGCACGCCCTCGGTTACCAAAAGCACGCCCTCACCT
CCCATCGAACTAGCGAACATAAATACCCCTGTACATAGCGTCCCAATAAA
AAATCCACCAATCAAGTTCAATTACAATGTTATTCTTCCTATGTTACGGG
ACATACAAAGTCAAACTTGTTGTCATTCATTCAGACCACAAAGTAagaca
aaagaaataaaaagttcGGTTGAGCGAGACAAATTACCCGCTATTCATAC
TGGGAGATCGAGTCGAAGATCTTCGACAATGACATCACGCACAAGCTCCA
GGAACAATAGTTTACCAAATTGGAAGTTATCGGAATCGGGAAAATTTCGG
TTGTCCGATTTGAATAATCGAGGGAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011245-exon-sc0000122-1491911889:309963..311192 | TCONS_00011245-exon-sc0000122-1491911889:309963..311192 | Clytia hemisphaerica | exon |
| TCONS_00011245-exon-sc0000122-1510915933:309963..311192 | TCONS_00011245-exon-sc0000122-1510915933:309963..311192 | Clytia hemisphaerica | exon |
| TCONS_00011245-exon-sc0000122-1575043694:309963..311192 | TCONS_00011245-exon-sc0000122-1575043694:309963..311192 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000122 | supercontig | sc0000122:309963..311192 . |
Blast
The following BLAST results are available for this feature:
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