TCONS_00011244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011244
Unique NameTCONS_00011244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length798

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011244 ID=TCONS_00011244|Name=TCONS_00011244|organism=Clytia hemisphaerica|type=transcript|length=798bp
AGTTGAACAGTTTCCAATGGACAATCGGGTTTTTCGGACTCCCAGAAAAC
ATCGCTAATTCATCTACGTAATCTAAATATTTAATACCCAGCTTATGCAA
ATACTTTAACGGTTCCCCAGATTCAATCAGTTCCTGATTTCTTAGCTTAT
ATATCATTTTCCATATCATCTTTGAATGGTAATTGTGCTGACTTAGCTAA
AATAACTGTTGATGGAAGAGGGGGATAGGTACAACCTGATATGGTATCCA
ATGACCAATATCCAATATCCAATACAATGACGCATAATCAACATGGACAA
TAAGTTTGTATAGTTTATCAAGAGCTCTCTGATTCCCGATTGTTGATAAA
CGGATTTCCGGATTCAAAAACGGGAAATCAATTGAGTATCCAGTACAGAT
GATGAAAAGACCTACATTTTGGATGATGTCATGATTAGTCAGTACAAAAT
CACCATTCCCGTTGACATGTGATATACTTGGTTTCTCTATTACATTCTCA
GGTGCATTCACGAATATTGGTTAATCTCCTTTAATATGGCATACGTAAAC
ATTGTCACAGGTTGTAGCAACATCAAGTGAAATATCACGACCAGACGGCC
CACCACCCAAAATGATCGCATTTTTAGTTCCCATGTAATCTTCAGGGTCT
CTATGGTAATGGCTTTGTAGTTGTTTacctttgaaatgttctttgagGCC
AGGTATTTCGGGATACAGTTGAACTCATTAATTCGAACTCCTATAATTCG
AAAACTCACTTAATTCGAACAGATTCTGTGGTCCCCTCAGAATTTACC
Run BLAST on NCBI

transcript from alignment at sc0000122:135418..136215

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011244 ID=TCONS_00011244|Name=TCONS_00011244|organism=Clytia hemisphaerica|type=transcript|length=798bp|location=Sequence derived from alignment at sc0000122:135418..136215 (Clytia hemisphaerica)
GGTAAATTCTGAGGGGACCACAGAATCTGTTCGAATTAAGTGAGTTTTCG
AATTATAGGAGTTCGAATTAATGAGTTCAACTGTATCCCGAAATACCTGG
CctcaaagaacatttcaaaggtAAACAACTACAAAGCCATTACCATAGAG
ACCCTGAAGATTACATGGGAACTAAAAATGCGATCATTTTGGGTGGTGGG
CCGTCTGGTCGTGATATTTCACTTGATGTTGCTACAACCTGTGACAATGT
TTACGTATGCCATATTAAAGGAGATTAACCAATATTCGTGAATGCACCTG
AGAATGTAATAGAGAAACCAAGTATATCACATGTCAACGGGAATGGTGAT
TTTGTACTGACTAATCATGACATCATCCAAAATGTAGGTCTTTTCATCAT
CTGTACTGGATACTCAATTGATTTCCCGTTTTTGAATCCGGAAATCCGTT
TATCAACAATCGGGAATCAGAGAGCTCTTGATAAACTATACAAACTTATT
GTCCATGTTGATTATGCGTCATTGTATTGGATATTGGATATTGGTCATTG
GATACCATATCAGGTTGTACCTATCCCCCTCTTCCATCAACAGTTATTTT
AGCTAAGTCAGCACAATTACCATTCAAAGATGATATGGAAAATGATATAT
AAGCTAAGAAATCAGGAACTGATTGAATCTGGGGAACCGTTAAAGTATTT
GCATAAGCTGGGTATTAAATATTTAGATTACGTAGATGAATTAGCGATGT
TTTCTGGGAGTCCGAAAAACCCGATTGTCCATTGGAAACTGTTCAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006295XLOC_006295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011244-exon-sc0000122-1491911889:135418..136215TCONS_00011244-exon-sc0000122-1491911889:135418..136215Clytia hemisphaericaexon
TCONS_00011244-exon-sc0000122-1510915933:135418..136215TCONS_00011244-exon-sc0000122-1510915933:135418..136215Clytia hemisphaericaexon
TCONS_00011244-exon-sc0000122-1575043694:135418..136215TCONS_00011244-exon-sc0000122-1575043694:135418..136215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:135418..136215 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.120468	0.0587375	0.272799	0.200169	0.568601	0.385128	0.696961	0.217496	0.304547	0.125744	0.549225	0.0401154	0.560835	0.0832047	0.102608	0.256934	0	0.231732	0.512239	0.0670027	0.23295	0.255656	0.276252	0.37673	1.16407	1.09662	0.412963	0.088145	0.200565	0.340573
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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