TCONS_00011241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011241
Unique NameTCONS_00011241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011241 ID=TCONS_00011241|Name=TCONS_00011241|organism=Clytia hemisphaerica|type=transcript|length=605bp
atttatagaaTGGCTTTCAGATAAAAAAGATCAATGAATGGGGTGTAGGA
AGAAAATAAAATGCTTTCTGAGAAGACATCAAAGCTCATTGAAGCACTCT
TGGGTGACTTCAAGATAATACATAATGAATGTAAAAGAAAATTTCCTCAA
TTGAAAGGGTCTTTGGATATTGGTATCGTACGTCTTCGGATGCTGTCATC
ATCAAAAGATGGAGATACAAATGCTATGGAAGttttggGAACAAGTTCTG
AAATCTACAGCCCAATTTTTCACGGTTTGGAATCAAAGTATTTGAAGATT
ATTCCCACATGCCTGACTTGCATTCAACGACTGGCATCTGCCGCAGCTCT
CGCAGAGGCGCATGCGGCCAAGGTGATCTCACACTTGAGTCTACTTGCAG
ATGAGGATATTGAAGCATTGCGTGTGTTGCAGACTATTATTGTGATGATG
ACAACATCACATGTCATTCAAAAAGAATCTCTTGCTCAGACGTTAGTGTT
ATGCTTCAAGCTTTACTTCAGTACTGACGGAACAACTAGCAACACAGCCT
CAGCAGCCATCAGACAAGGAGTGGCTGTTGTCATTGACCAAATGATTGAA
GAAGA
Run BLAST on NCBI

protein sequence of TCONS_00011241-protein

>TCONS_00011241-protein ID=TCONS_00011241-protein|Name=TCONS_00011241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MLSEKTSKLIEALLGDFKIIHNECKRKFPQLKGSLDIGIVRLRMLSSSKD
GDTNAMEVLGTSSEIYSPIFHGLESKYLKIIPTCLTCIQRLASAAALAEA
HAAKVISHLSLLADEDIEALRVLQTIIVMMTTSHVIQKESLAQTLVLCFK
LYFSTDGTTSNTASAAIRQGVAVVIDQMIEE
Run BLAST on NCBI

transcript from alignment at sc0000122:573741..577418-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011241 ID=TCONS_00011241|Name=TCONS_00011241|organism=Clytia hemisphaerica|type=transcript|length=3678bp|location=Sequence derived from alignment at sc0000122:573741..577418- (Clytia hemisphaerica)
ATTTATAGAATGGCTTTCAGATAAAAAAGATCAATGAATGGGGTGTAGGA
AGAAAATAAAATGCTTTCTGAGAAGACATCAAAGCTCATTGAAGCACTCT
TGGGTGACTTCAAGATAATACATAATGAATGTAAAAGAAAATTTCCTCAA
TTGAAAGGGGTGAAGACATTTTAATGAACTTCACTCTGATCAATATAGCA
ATAATTAATGTTAAAATCGTAGTATTTTTTGGACTATGTGTTTTTAAGAT
TTGGTACATTTTTATGTAACTTTTGAACTCAAATAAGCTGTCTTTAAGAT
GAAATATAATAATAGCTTTTGAAAGAATTTTAATCGAAAATAAACATTTT
GTAAACAAGTAGAAAATTAGTATTGTGCTATAATTACCATTATATCAAGG
AAAAACAACCAAACAGTTAAAAACATCTGAAGTCATATTTTTTGATTGAA
TGGATTTTCTTTGAAAATGTTTTTAAAACATCTGTTCTGCTTTATAATTA
TAAACAATTTAAATTTTACACATGTAAATAATTTAATGTATGTTTTCTTT
GTGTTAACAGTCTTTGGATATTGGTATCGTACGTCTTCGGATGCTGTCAT
CATCAAAAGATGGAGATACAAATGCTATGGAAGGTCTGTTTAATTTTACT
GGATATCTCAACTTTCTCCCTGTGTATTCCAGGTAGTCTAGAGTAAAACT
CTTATATCAGGATTAGAAACTAGGCTTTCCTTATCTCTTTTGTCTTTCCA
TTTGCAACAGTACAATTCTGACAAGTTGTCACAACACATGGACAAGTAAA
ATGTGAGAAGTTTGTATCAAAATCTGCAGCAAAAACAGAGGTGGTTTCTT
TTACCATCTGCTTTGGGGCGCTCGTTCCTAGACTGTTAATTTGATTTCAA
CCAAAAAGATTACCACATTTCTCACTGGCCCTTCTTTTTTATGCTCTTGG
CCTTAAAATCATTGAACAAGAGAAGAATTAAAATCTTAAATATTTTAATT
TTGTATGAAGAATTGCTGCAANCATTGAACAAGAGAAGAATTAAAATCGG
GCAGGTCTAAAACGCCTAATACCTACTACTTAATACTTACTACTTAATAC
TTAATACTGACTACCTAATCCGTTTGGATACTTTACAGACCAGAACTTCC
GGGCCCTGACACTCCTTCGCATGTTCGAAATCTCTAAGTTTCGTGAAATT
TGAATGTCAACACATAAGTCTTTGCTGTATATTTACCTAAAGTCTTTCAA
TGTGTTATCTAAAAGAATATTTAAATATTTGCATTAAAGTAAATATTTTC
TTCCCCCCATATAAGTACAAAGCAAAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACATTAATAGTT
CTTATTATAATGAAGTTTAAAAAGGCCATATTAAACGACCCTGTCAATAT
TCTGGCTCGAAAGGGTCATTTGTAAATCAGGTTTGTAATAAAATCAAGTC
ATGTTTAAATATTCTCTTCCATCTACTGTACTTCAGTTACGTCTGGTCCA
ATGAAACAGGGGCATACTTACTTATTTTAAATTTTCAGATCGACTGATTC
TTATAAATAAAGCTAATATATGAGCAAACGAAATATTTTTCTCCTACGAA
AAAGTGTGTCTCGACAAAATGTGTGTAGTCTGTAAACTTTATAGAAAAAG
CGCGGGAAAATAAAGTGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAGGT
ATTTTCGAGCAATTTTGAGGTATATACAGTAAATATTAAGTATTAGGTAG
TAAGTATTAAGTAGTAGGTATTAGGCGTTTTAGACCTGCCCAATTAAAAT
CTTAAATATTTTCATTTTGTATGAAGAATTGGTGCAAAAAGAAACATTAA
AAACTTTTGTTTTTTATTGGTTTAATAAAATGGGGGATTTAAAAATGTTC
TATGTTAAGGTTTTTGCACAGACCCTGTAACTATGGGTGAGCACCCTGTT
GCTAGGAAGTTGGCTTGAAATCAAAAAATGAAACCACTTTAAAACCAGAT
AGTGCCAGGGTGTATTATCAATACTATTAGTAAGCATAAAAAAGATGACG
ATGATACACAGGTTACATATAGGTACATCAACTTATAAATAATTCCTCAT
GTCTTAATTCTAAATATACCTCAATTGAAGAAGTGCAGTTTGGACAAAGT
TTTGTTTTTACGTTTTTTATTTTCAGTTTTGGGAACAAGTTCTGAAATCT
ACAGCCCAATTTTTCACGGTTTGGAATCAAAGTATTTGAAGATTATTCCC
ACATGCCTGACTTGCATTCAACGACTGGCATCTGCCGCAGCTCTCGCAGA
GGTTTGTTATGATCAAGTTTTGTATTTTAAAAATTTTCAATTAGATCTCC
ATGCTTGTTGTTTTTCGGCTTAAGATTTAAATTTAAAATTTTAATTAACT
TCATTTGAAATTCTTTATAGGCGCATGCGGCCAAGGTGATCTCACACTTG
AGTCTACTTGCAGATGAGGATATTGAAGCATTGCGTGTGTTGCAGACTAT
TATTGTGATGATGACAACATCACATGTCATTCAAAAAGAATCTCTTGCTC
AGGTTGGTCTTACATCTAATTGTAAAAATAGACCATATTTTATAAAAGAC
AGGGCTACGTCCTTTGTTAGCCAAAAAGGGGGTTTTCCCATTAAAAAGAC
TGTTTTTACCAAAATTTTAGGGCTTTCAGGAGGGGCAGCATCTGATAACC
AGACATTAAGAGGGCTTGAAAAATAGCATGAAAAACGTTTTAGTTAGACG
TTAAACATGCTTACCGTACACCCTCCCTGAAAGTGTTTGGGATTTGAACA
CAGTTGCATTGCAAGCCTGTTTTCATTCACACATCAGCCTCTCAAACCAA
TTGGAACCAATCTAAATTGGATCGCTTCGCAATTCTTACACATATAAGCA
AGCTTCGCAAAGTTCAAGATTATAGGTTAGAATGATACACGATGCTTCGA
TGCCTTTTGATATTTCAAATCTTTAAGCTAATCCCTTCGTGTGTTTTCTC
TTTATTTTGCAGACGTTAGTGTTATGCTTCAAGCTTTACTTCAGTACTGA
CGGAACAACTAGCAACACAGCCTCAGCAGCCATCAGACAAGGAGTGGCTG
TTGTCATTGACCAAATGATTGAAGAAGA

Coding sequence (CDS) from alignment at sc0000122:573741..577418-

>TCONS_00011241 ID=TCONS_00011241|Name=TCONS_00011241|organism=Clytia hemisphaerica|type=CDS|length=2715bp|location=Sequence derived from alignment at sc0000122:573741..577418- (Clytia hemisphaerica)
ACGTTAGTGTTATGCTTCAAGCTTTACTTCAGTACTGACGGAACAACTAG
CAACACAGCCTCAGCAGCCATCAGACAAGGAGTGGCTGTTGTCATTGACC
AAATGATTGAAGAAGCGCATGCGGCCAAGGTGATCTCACACTTGAGTCTA
CTTGCAGATGAGGATATTGAAGCATTGCGTGTGTTGCAGACTATTATTGT
GATGATGACAACATCACATGTCATTCAAAAAGAATCTCTTGCTCAGTTTT
GGGAACAAGTTCTGAAATCTACAGCCCAATTTTTCACGGTTTGGAATCAA
AGTATTTGAAGATTATTCCCACATGCCTGACTTGCATTCAACGACTGGCA
TCTGCCGCAGCTCTCGCAGAGTCTTTGGATATTGGTATCGTACGTCTTCG
GATGCTGTCATCATCAAAAGATGGAGATACAAATGCTATGGAAGATGCTT
TCTGAGAAGACATCAAAGCTCATTGAAGCACTCTTGGGTGACTTCAAGAT
AATACATAATGAATGTAAAAGAAAATTTCCTCAATTGAAAGGGACGTTAG
TGTTATGCTTCAAGCTTTACTTCAGTACTGACGGAACAACTAGCAACACA
GCCTCAGCAGCCATCAGACAAGGAGTGGCTGTTGTCATTGACCAAATGAT
TGAAGAAGCGCATGCGGCCAAGGTGATCTCACACTTGAGTCTACTTGCAG
ATGAGGATATTGAAGCATTGCGTGTGTTGCAGACTATTATTGTGATGATG
ACAACATCACATGTCATTCAAAAAGAATCTCTTGCTCAGTTTTGGGAACA
AGTTCTGAAATCTACAGCCCAATTTTTCACGGTTTGGAATCAAAGTATTT
GAAGATTATTCCCACATGCCTGACTTGCATTCAACGACTGGCATCTGCCG
CAGCTCTCGCAGAGTCTTTGGATATTGGTATCGTACGTCTTCGGATGCTG
TCATCATCAAAAGATGGAGATACAAATGCTATGGAAGATGCTTTCTGAGA
AGACATCAAAGCTCATTGAAGCACTCTTGGGTGACTTCAAGATAATACAT
AATGAATGTAAAAGAAAATTTCCTCAATTGAAAGGGACGTTAGTGTTATG
CTTCAAGCTTTACTTCAGTACTGACGGAACAACTAGCAACACAGCCTCAG
CAGCCATCAGACAAGGAGTGGCTGTTGTCATTGACCAAATGATTGAAGAA
GCGCATGCGGCCAAGGTGATCTCACACTTGAGTCTACTTGCAGATGAGGA
TATTGAAGCATTGCGTGTGTTGCAGACTATTATTGTGATGATGACAACAT
CACATGTCATTCAAAAAGAATCTCTTGCTCAGTTTTGGGAACAAGTTCTG
AAATCTACAGCCCAATTTTTCACGGTTTGGAATCAAAGTATTTGAAGATT
ATTCCCACATGCCTGACTTGCATTCAACGACTGGCATCTGCCGCAGCTCT
CGCAGAGTCTTTGGATATTGGTATCGTACGTCTTCGGATGCTGTCATCAT
CAAAAGATGGAGATACAAATGCTATGGAAGATGCTTTCTGAGAAGACATC
AAAGCTCATTGAAGCACTCTTGGGTGACTTCAAGATAATACATAATGAAT
GTAAAAGAAAATTTCCTCAATTGAAAGGGACGTTAGTGTTATGCTTCAAG
CTTTACTTCAGTACTGACGGAACAACTAGCAACACAGCCTCAGCAGCCAT
CAGACAAGGAGTGGCTGTTGTCATTGACCAAATGATTGAAGAAGCGCATG
CGGCCAAGGTGATCTCACACTTGAGTCTACTTGCAGATGAGGATATTGAA
GCATTGCGTGTGTTGCAGACTATTATTGTGATGATGACAACATCACATGT
CATTCAAAAAGAATCTCTTGCTCAGTTTTGGGAACAAGTTCTGAAATCTA
CAGCCCAATTTTTCACGGTTTGGAATCAAAGTATTTGAAGATTATTCCCA
CATGCCTGACTTGCATTCAACGACTGGCATCTGCCGCAGCTCTCGCAGAG
TCTTTGGATATTGGTATCGTACGTCTTCGGATGCTGTCATCATCAAAAGA
TGGAGATACAAATGCTATGGAAGATGCTTTCTGAGAAGACATCAAAGCTC
ATTGAAGCACTCTTGGGTGACTTCAAGATAATACATAATGAATGTAAAAG
AAAATTTCCTCAATTGAAAGGGACGTTAGTGTTATGCTTCAAGCTTTACT
TCAGTACTGACGGAACAACTAGCAACACAGCCTCAGCAGCCATCAGACAA
GGAGTGGCTGTTGTCATTGACCAAATGATTGAAGAAGCGCATGCGGCCAA
GGTGATCTCACACTTGAGTCTACTTGCAGATGAGGATATTGAAGCATTGC
GTGTGTTGCAGACTATTATTGTGATGATGACAACATCACATGTCATTCAA
AAAGAATCTCTTGCTCAGTTTTGGGAACAAGTTCTGAAATCTACAGCCCA
ATTTTTCACGGTTTGGAATCAAAGTATTTGAAGATTATTCCCACATGCCT
GACTTGCATTCAACGACTGGCATCTGCCGCAGCTCTCGCAGAGTCTTTGG
ATATTGGTATCGTACGTCTTCGGATGCTGTCATCATCAAAAGATGGAGAT
ACAAATGCTATGGAAGATGCTTTCTGAGAAGACATCAAAGCTCATTGAAG
CACTCTTGGGTGACTTCAAGATAATACATAATGAATGTAAAAGAAAATTT
CCTCAATTGAAAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006292XLOC_006292Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011241-exon-sc0000122-1575043694:577260..577418TCONS_00011241-exon-sc0000122-1575043694:577260..577418Clytia hemisphaericaexon
TCONS_00011241-exon-sc0000122-1575043694:576786..576858TCONS_00011241-exon-sc0000122-1575043694:576786..576858Clytia hemisphaericaexon
TCONS_00011241-exon-sc0000122-1575043694:574568..574692TCONS_00011241-exon-sc0000122-1575043694:574568..574692Clytia hemisphaericaexon
TCONS_00011241-exon-sc0000122-1575043694:574317..574448TCONS_00011241-exon-sc0000122-1575043694:574317..574448Clytia hemisphaericaexon
TCONS_00011241-exon-sc0000122-1575043694:573741..573856TCONS_00011241-exon-sc0000122-1575043694:573741..573856Clytia hemisphaericaexon
TCONS_00011241-exon-sc0000122-1510915933:577260..577418TCONS_00011241-exon-sc0000122-1510915933:577260..577418Clytia hemisphaericaexon
TCONS_00011241-exon-sc0000122-1510915933:576786..576858TCONS_00011241-exon-sc0000122-1510915933:576786..576858Clytia hemisphaericaexon
TCONS_00011241-exon-sc0000122-1510915933:574568..574692TCONS_00011241-exon-sc0000122-1510915933:574568..574692Clytia hemisphaericaexon
TCONS_00011241-exon-sc0000122-1510915933:574317..574448TCONS_00011241-exon-sc0000122-1510915933:574317..574448Clytia hemisphaericaexon
TCONS_00011241-exon-sc0000122-1510915933:573741..573856TCONS_00011241-exon-sc0000122-1510915933:573741..573856Clytia hemisphaericaexon
TCONS_00011241-exon-sc0000122-1491911889:577260..577418TCONS_00011241-exon-sc0000122-1491911889:577260..577418Clytia hemisphaericaexon
TCONS_00011241-exon-sc0000122-1491911889:576786..576858TCONS_00011241-exon-sc0000122-1491911889:576786..576858Clytia hemisphaericaexon
TCONS_00011241-exon-sc0000122-1491911889:574568..574692TCONS_00011241-exon-sc0000122-1491911889:574568..574692Clytia hemisphaericaexon
TCONS_00011241-exon-sc0000122-1491911889:574317..574448TCONS_00011241-exon-sc0000122-1491911889:574317..574448Clytia hemisphaericaexon
TCONS_00011241-exon-sc0000122-1491911889:573741..573856TCONS_00011241-exon-sc0000122-1491911889:573741..573856Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011241-proteinTCONS_00011241-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:573741..577418 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.54009	7.77545	3.34748	3.0765	32.7415	26.1592	37.5495	39.4667	27.0276	35.6288	25.4147	28.9383	35.3331	35.7037	26.3519	38.9254	27.5073	30.8826	17.1426	21.4265	17.7573	20.4071	10.9913	22.4135	21.4502	25.4106	13.3902	13.5038	20.882	17.6283
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032629DCB_dom
Blast
[Close]
BLAST of TCONS_00011241 vs. Swiss-Prot (Human)
Match: MON2 (Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 8.354e-24
Identity = 66/179 (36.87%), Postives = 112/179 (62.57%), Query Frame = 1 
Query:   70 EKTSKLIEALLGDFKIIHNECKRKFPQLKGSLDIGIVRLRMLSSSKDGDTNAMEVLG-TSSEIYSPIFHGLESKYLKIIPTCLTCIQRLXXXXXXXXXXXXKVISHLSLLADEDIEALRVLQTIIVMMTTSHVIQKESLAQTLVLCFKLYFSTDGTTSNTASAAIRQGVAVVIDQMIEE 603
            E   KL+E +  D + +  ECK+KFP +K + + GI++++ +++    +T  +  L   SSE+  P   G  +K  KI   CL  IQRL S   ++E  A  +I+ L  L +  +E L++LQT++V++TT+ V+  E+L++ +VLCF+L+F+ D  T+NTA+A +RQ V VV ++M+ E
Sbjct:    8 EAVKKLLENMQSDLRALSLECKKKFPPVKEAAESGIIKVKTIAAR---NTEILAALKENSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAE 183
The following BLAST results are available for this feature:
BLAST of TCONS_00011241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MON28.354e-2436.87Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 ... [more]
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