TCONS_00011238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011238
Unique NameTCONS_00011238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011238 ID=TCONS_00011238|Name=TCONS_00011238|organism=Clytia hemisphaerica|type=transcript|length=843bp
CCAAAACAACTTAAAAGCCaccaaaattgttcaaaaaatcaattctaaaa
accaagaaaaataataaaaatcttgaaatcttACCTCTCGCGTCTTCCAT
TTTGTTTACGTACTTTCAAGTGATGGATACAAgtttatggattttttttc
gaagCGTATAAGAAATACTTCAAAAAAGTTGTAATAAGTTTTATCGAAAA
TGGATTCATTTTCTCAAAGATTTCTGCTTTATAGTCGAGAACTAAAGTGT
CATCTCTATAAAGACTCCAGTGAAAGAAGtagttcatttttttaaatctt
atagAAATTTTCTCAAACATAACATCTACCATGTTTCCTAGGACTATATC
CTATGGTCTGAATCAACAGCCGCAGTATTCCTTTTCGCTTCACATTTTTT
CTTCGACAAGTCAAGAGTCAGGTCGTGAAAGTTTCAAATATGAGTGGCAG
ACAAGGTGGAAAGAAGAAACCTTTAAAAGctgcaaagaaaaaagaagtaG
ATTATGATTCGGAAGACGAAGcgttcaaacaaaaacaaaaggacGATAAG
AAAGCGCTTGAAGAGATGAAGAAGAAGGCTTCACAGAAAGGACCCCTCTC
TGGAGGAGGCATCAAGAAATCGGGGAAGAAGTAAGATGATCGTCATTCCT
GAACGTGATGTCATTTCTTCATTTGTATAAAggaacttttttaattttaa
cgAAATAAACGGGAGAAGGTTGCCGTTAAAGTTTCAATTCTTGCTCTTGT
CTCCAAAAAAAGTTTGAGAGTTGAGTTTCAGAACAACTCAGATGAAAATT
CTTCAATAGCACTCAATCCTAAGGGTTTTATTTGGGTTAAACA
Run BLAST on NCBI

transcript from alignment at sc0000122:514208..517834-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011238 ID=TCONS_00011238|Name=TCONS_00011238|organism=Clytia hemisphaerica|type=transcript|length=3627bp|location=Sequence derived from alignment at sc0000122:514208..517834- (Clytia hemisphaerica)
CCAAAACAACTTAAAAGCCACCAAAATTGTTCAAAAAATCAATTCTAAAA
ACCAAGAAAAATAATAAAAATCTTGAAATCTTACCTCTCGCGTCTTCCAT
TTTGTTTACGTACTTTCAAGTGATGGATACAAGTTTATGGATTTTTTTTC
GAAGCGTATAAGAAATACTTCAAAAAAGTTGTAATAAGTTTTATCGAAAA
TGGATTCATTTTCTCAAAGATTTCTGCTTTATAGTCGAGAACTAAAGTGT
CATCTCTATAAAGACTCCAGTGAAAGAAGTAGTTCATTTTTTTAAATCTT
ATAGAAATTTTCTCAAACATAACATCTACCATGTTTCCTAGGACTATATC
CTATGGTCTGAATCAACAGCCGCAGTATTCCTTTTCGCTTCACATTTTTT
CTTCGACAAGTCAAGAGTCAGGTCGTGAAAGTTTCAAATATGAGTGGCAG
ACAAGGTGAGTAATCTATATCTCTTATCTCATGAAATTGAGTTTTCTGAT
AATAGTTAACTCTTCATCGACGTGTTTTGTGATAAGAATTGTTCCTTCTT
ATTGTTCCCTTCTTTATAGGTGGAAAGAAGAAACCTTTAAAAGCTGCAAA
GAAAAAAGAAGTAGATTATGATTCGGTAAGTTCAATAAATTTATCTAACA
TTTGAAAGAGAAAAGCTGAGATGTTGAGAGGGGCTGAGGGATACTCAAAA
TAGCCTGGATATCCAGACCGTAAACTATTTCACCGTCTAGTTTTTTATAA
TCTTGTCTCTGGTTTACGGTCTGGTCGAAGTAACTCNACTTTTTTAGTTG
CACCAGACTCTAAAATTTTAGAAACTTTGTATGTTGAGGTAAGAGTTTTT
TTTTCTGAAATTTTGAGTCTGGATACCCAGGCTATACTCAAAAGCAAATA
GAGACAATAAGAAACATGTATAAAGTTTTTTAACAGCGTACACGTGTGGG
AATGACCCTCGACACTGCCGTACATTGTGGAACTTTGTATGGTGGTGAAA
ATAGAATAACTTGAAATCTGTCGTACATCCCAGCATATGGGCAGCATACC
CACTGTACATTACTGAACAATGTGCGGTGGTGTCCAGGGTCGTGTGTGGG
AATAATGTCCTGAGAAAGCAGTAGATAGTGGGGACAGTCAGTCAAGGAAT
TCCCTTAATTGCTGTAGGATTGTTTACCTCAATTGTAGTATGAATGTCAC
TCTAAAATTTTCTACAAACTGTATATACTGCAATTGCAGTATATGCAAGA
AAGAAATTGTGCAAGAAAATTCAAGTTTTGAGCAGAAAATAAGGGAGTTT
TTATCTTTTTAATGTCGCACAGATGAAACATTTCTTCACTGTTTCCATAG
ATAAGTTCTATCTAGGGGTCTATTCTAAAATGTTATTTTAACTATTACAG
CTTGTTTTTGTTATTTGTTTGTACTGTATGATATAATATCAAACCTCAGA
AGACAAATATTTTTTAATTAGCTTCAGTTATTTTTGGGAATAGAAACTAT
TGGAAGCTAAAAATGTTTAGGGAGCATTTGGTTCAAATTTAATTGTACTC
TTGCAGCTTTTTGATGTGTTAACTTGCAAAGTTTTGTCTTGTTTGCATGT
GTATTTCAGACAAAAGAAGTCAAAAGAAAGATTATTGAGTAACCTTGAAA
GATCCCTTGTGGTAGTTTTTTAACCATCACAATTTCAAAATATAGATATT
TGGGAAACAGTTTCAAATCTTTATATTACCATTGGCCAAGGTGATGAGTG
AGTTGACTAAGCAACGGTTTGTAATTAATATGGCTACAGTGTTAGGTACT
GTTAGCTGAAGTGAACATTGAATGTTTGAAATGATTTAAAACTTTGACTT
GACTTGTGACATCTTGACTTGACCAAAGTCAGGAAGGCAAGAATTTTGGT
GGGAACTTAATTTAGTGGATAAGCTAAATCAATTCTGTTCTTTTTGCCAT
TCACCAAATTAAATCCCTGCCAAATTAGAATCATTGTATTCATTCTCCAA
ATGTATGCTTCTTCGTCGGGCCTTGAAACAGGGTTTTTCCAATTAAAATA
CCCACCAAATTTAATTTCTCCTTCAAGGTACCCCATTTCCCATACTGCCT
GCATTTACATTACATTTCTCATCACATTCTCGTTTAATAATTCCTTCAAT
GCATTCACAAAATTTCTTTCAATTTTGAATAACTTGACTTTTTAGGAAGA
CGAAGCGTTCAAACAAAAACAAAAGGACGATAAGAAAGCGCTTGAAGAGA
TGAAGAAGAAGGCTTCACAGAAAGGACCCCTCTGTAAGATTTTGATAAAT
ATCAGGTTTTGTGAGAAATCTCATTGATTTTAAAATTGACCTCGTTGACA
TTGGTGTTACAGTCTTCTGATTCTTCACAGGCCTAGGCCATGGAGGTATA
AAGAAAAACAGAAGTTGAATTAGTTGGTAACTGGTCGTCGGTAAAATCGC
TTAAATTTGCTCATTCGCCGTACCAGATATAAAAAGCTTCCGTCGTACCT
GTCGTCCTATCTAATTTCTAACATTTAAATGAGCAAATAAGATTTCACCA
ATGGACAAAAGAGCTCATTAAAAGTGCATGATATATGAGATTATGAGCAT
GCAAACCTGGTAACTCTTTTAATCGTAGGGCGAGCTTATTATAACATACT
TCTCCTGTTTTTCTTTATGACTTCATGTCTGGACGATTTTTTTGGAAAAG
GGTTGGGTTTGATTAGTTAAGTTTTGAACGCTCGCTACATTTTTATTTAA
AAAATTTCAAAATGAACCGCTTTCTGAAGAAAGTCCATACATTGGTTAAT
CAGTAGACTGGAGTCGTTTATAATGCGTGTAATACTAATAATACCAATAC
TACTAATAATAATACGGGATTTAGTTTGTATAAAGTATAAACGACTGGAA
GAATCCGGTGTTCCAGCCTTATAGATACAGGGGCTAGCTACGCACGAGAA
AACAATTTATCAAGCAACAACAAACTCTCAAAACGAAGTCAACTCAAATG
AAAAACTTTCAATATATACACAAATCCACACATATTCTTTTTTCTCAAGA
ATTATTTTGAGCAGGAAAAAATTATAATTGCAATATTGACAGTTTTCTTT
TGTTTGGAGTGCACAAAGGTTTCTAGACGACTAAAATTTTTCCATTCATT
ACTTTTTGCTTTATTTCTACTATGTATAAGTCGTCTAGCTTGCTAGACTA
GTTTAAATCAGAAAATATGGCGCGTCTACCTTAGTTAGTTTCAGCTATTT
CTTCGCTCACCCGACCTGAGAGTCCAGGGGTTTCACCATTTCAAAAATTA
GCAATCTTTTCATTCNACCCGAGAGTCCAGGGGTTTGACCATTTCAAAAA
TTAGCAATCTTTTCATTCAAATTTCTGTTTTAGCTGGAGGAGGCATCAAG
AAATCGGGGAAGAAGTAAGATGATCGTCATTCCTGAACGTGATGTCATTT
CTTCATTTGTATAAAGGAACTTTTTTAATTTTAACGAAATAAACGGGAGA
AGGTTGCCGTTAAAGTTTCAATTCTTGCTCTTGTCTCCAAAAAAAGTTTG
AGAGTTGAGTTTCAGAACAACTCAGATGAAAATTCTTCAATAGCACTCAA
TCCTAAGGGTTTTATTTGGGTTAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006289XLOC_006289Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011238-exon-sc0000122-1575043694:517380..517834TCONS_00011238-exon-sc0000122-1575043694:517380..517834Clytia hemisphaericaexon
TCONS_00011238-exon-sc0000122-1575043694:517210..517265TCONS_00011238-exon-sc0000122-1575043694:517210..517265Clytia hemisphaericaexon
TCONS_00011238-exon-sc0000122-1575043694:515552..515639TCONS_00011238-exon-sc0000122-1575043694:515552..515639Clytia hemisphaericaexon
TCONS_00011238-exon-sc0000122-1575043694:514208..514451TCONS_00011238-exon-sc0000122-1575043694:514208..514451Clytia hemisphaericaexon
TCONS_00011238-exon-sc0000122-1510915933:517380..517834TCONS_00011238-exon-sc0000122-1510915933:517380..517834Clytia hemisphaericaexon
TCONS_00011238-exon-sc0000122-1510915933:517210..517265TCONS_00011238-exon-sc0000122-1510915933:517210..517265Clytia hemisphaericaexon
TCONS_00011238-exon-sc0000122-1510915933:515552..515639TCONS_00011238-exon-sc0000122-1510915933:515552..515639Clytia hemisphaericaexon
TCONS_00011238-exon-sc0000122-1510915933:514208..514451TCONS_00011238-exon-sc0000122-1510915933:514208..514451Clytia hemisphaericaexon
TCONS_00011238-exon-sc0000122-1491911889:517380..517834TCONS_00011238-exon-sc0000122-1491911889:517380..517834Clytia hemisphaericaexon
TCONS_00011238-exon-sc0000122-1491911889:517210..517265TCONS_00011238-exon-sc0000122-1491911889:517210..517265Clytia hemisphaericaexon
TCONS_00011238-exon-sc0000122-1491911889:515552..515639TCONS_00011238-exon-sc0000122-1491911889:515552..515639Clytia hemisphaericaexon
TCONS_00011238-exon-sc0000122-1491911889:514208..514451TCONS_00011238-exon-sc0000122-1491911889:514208..514451Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:514208..517834 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
266.139	253.252	341.443	449.53	234.917	188.557	219.284	244.221	318.769	250.167	278.932	336.084	224.489	254.623	248.513	219.226	275.698	253.69	211.113	211.08	255.641	237.273	318.944	282.384	277.391	267.136	321.5	337.054	212.788	218.822
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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