TCONS_00011233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011233
Unique NameTCONS_00011233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011233 ID=TCONS_00011233|Name=TCONS_00011233|organism=Clytia hemisphaerica|type=transcript|length=1056bp
GCGCCCTCGCCACCATATCTAAAGGGCGGGGCCGCCAAACGTAAACTTTC
CTCGTGAAATTTTCGGTACCGGCATGTTATAAATCTGACGAGTGTATTGT
GGGAGCTTGACACCGCCATCTTTCTTTTACCCTGTTCGACATTTCGAAGC
CTCGTGTGGCATAGTTGGACAAAATGAAGTGCAAGGGAGAGTTGAAAGAA
TTCAAGATCATCGGACGACGTGTCCCAACTGCCAAAGTTCCAAAACCACC
TCTCTTCCGCATGAGAATCTTTGCTCCAGATGTTGTTGCAGCTAAGTCAC
GATTCTGGTACTTCATGGCCTTGcacaagaaattgaagaaaactgTTGGT
GAGATTGTTGCTTGCTCACAGATCTCTGAGAAGAACCCAAGCTCAGTCAA
GAACTTTGGAATTTGGTTGAGATACAACTCTCGAAGTGGAACCCACAACA
TGTACAGAGAATACAGAGATATTACTGTCTGCGGTGCTGTTACTCAATGT
TACCGTGATATGGCTGCTCGGCATCGTGCACGTGCTTCTTccattcaaat
tttgaaaattgaaactgtTGAATCCAGCAAAGTTCGACGTCCACAAGTCA
AACAAATGATTAACTCGAAATTGCGATTTCCACTTCCACACAGAGTTATG
CGCTCTCAATTCCGATCGACCTTCCAAGCTCACCGACCACACACTCATTT
GTAATTTATAATTATTAATAAAAGATGAATTATAAATGGGAAATTTATCA
AGCGTGTGTTTATTACTGCCTTGCTAAAAATGAAAGATCCTCGATTCCAA
TAAtgagtttttggacctaccccggtggggtggaggtcctataaattaac
ttgtgtccgttcgttaccaacttttctcaggattgaatcataggaatctt
ttgatttttggtacaaaggtgcaaaatggtggtgggtcattttaagctat
tttcctttatagcctctcaaatattgactttttggaatccttggataaat
atctttcatttgagccatatatgagcttcaaattttcactttcatttacA
AGCCCC
Run BLAST on NCBI

transcript from alignment at sc0000122:271348..290570-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011233 ID=TCONS_00011233|Name=TCONS_00011233|organism=Clytia hemisphaerica|type=transcript|length=19223bp|location=Sequence derived from alignment at sc0000122:271348..290570- (Clytia hemisphaerica)
GCGCCCTCGCCACCATATCTAAAGGGCGGGGCCGCCAAACGTAAACTTTC
CTCGTGAAATTTTCGGTACCGGCATGTTATAAATCTGACGAGTGTATTGT
GGGAGCTTGACACCGCCATCTTTCTTTTACCCTGTTCGACATTTCGAAGC
CTCGTGTGGCATAGTTGGACAAAATGAAGTGCAAGGGAGAGGTAAGGAAA
CCATTCCATACGTCTTAAGTCTACTAAAATGTGGGACAAATATGTCATTG
CTAAATTTGTGTAACTTTCATGGACGATTTGCTGTATTTTTCCTTTGGAA
TTGCATTTTAAATATGTTGATGAAAATTGGAAGTACTTTTTTGCTTGACA
GCATTTTTTGGTGGTTAGACTATACATAAATAACATTCAAAAGTTGGACA
TTGCACTCATTAACTGACAAGTATTTATTATGGTCATATTTTTAGTTGAA
AGAATTCAAGATCATCGGACGACGTGTCCCAACTGCCAAAGTTCCAAAAC
CACCTCTCTTCCGCATGAGAATCTTTGCTCCAGATGTTGTTGCAGCTAAG
TCACGATTCTGGTACTTCATGGCCTTGCACAAGAAATTGAAGAAAACTGT
TGGTGAGATTGTTGCTTGCTCACAGGTAATCAATTTGGGGTTGGTGTAAT
TTAAGATGCACGATCTGACGATTTACGATGCACGATTTGCGATCCACGTG
CGTTTGGTTTGGGAACGCGAAACACGAACGCAAACTACCCATGTCTAAAG
TTTTCAATATATCTCCAGAACTAACAGATTTTTTGAAATTCTGTAAGGGG
CGACGTCCATATTCAAAGTCGCCACGCGCAACGGGAAAAGACCGTTAGTG
GGTAGGTATATCGGAATGTTGAGAGTTAGCTGTGGCATTGATGACCAAAA
TGAAACTCCACTAAAAATTCCAAGGAAAAAATCAAAGATCGCTTATCTTG
TCTTAGCGCTCACTTCTTCGCTTTTTCCTTTAGCATGCTATCCAAAATCC
TTTCCCTGAGCAATTTAGGGGTGGTTTCAGAGTATAACATTCTTGCCTTG
GGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AAAGATATAGTCAAATCTTGTAGGGTCATTTTTCAAAATTTTTTTGCCAA
ATTCGATTTTCGCATTTCGCCATTTTACCCTACGCAAACGCACGTGGATC
CGTGCATAAAATATGTTAATTCATGCGTAATTATGCAAATTATGATTAAA
TAGTTAGGCAATTTACAAACTTTCATTTGCAGAAACTCAATTATTTTTGA
AAACATCATAATCAGTCATAGATTAAAAGAAAGTGAAAAACACGTGCATT
CACCTTCTGTACTCTCTCTCTTTTTCATAACTTGAATCAATAGGGGAATT
GTTTACCGAAAGAAAATTCTTTCTCATAATAGAGCATCAGTTTTTTGCTT
CGTACATTACGGTCCGCAAAACATATTATGAGAGAGCAAAAATACTTCTT
GTGCATTGATTACTTATACTATCCCTGTCTATTGTTATCTGGCACCCGAT
GTAGAAATTTTCTTCCGACACGCTAAAGCTCTGAAGGTCGGGAAAATTTT
CAACATCTGGAAGAAATACATTACGGAATTTCGCCTGACCGCGTAATTTT
TTAGAAAAATGGGCCCGAGTACAATTTGGACAGGAAAGGTGTCATGGCCG
ACAAAATTTGGGTCAGAAAAAACTTCAAAATGTTTCACGAAATAAATTCA
AATACAAAACTTTTTGGAGGAGGAATCATGCAAAATATTATCATTCTTTT
CACAAGGAGGTTATGTAGAAATACTCAAGTAAGTATTTTTCCTTCTTTAA
ACTGATCACAGAAGCAAAAACAAAATAGTTAAATAACATTGTACACAAAA
AAGCCTGAAAGAAGAGAAAAGTAATAATCAGCATCTATAATAACACTAAA
AGAAAAACTAAAGCTATAGGAAATGAATACTAACCCTCAATGAACACTTT
TGTGAAGTTTAATAAAGATTTTATCCAAAAAACTTCAGTTCTGGAACACT
GAAGTCGGTTTGTGTCGGTTGTCGGCCGGNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNCAATGGATGACTACTATTTCTCTCCGATGGTATATTGGCCCGC
TCCTTTAGAGCTTTAGCGTGGGCGGCCGCCAATACGCCATCGGAATATCA
GATAATGTCTATTGTAAGATTATGTTCACAAGGTAGCTTCCATTATCAAC
ATTATGATTATGTAAGTTAGTTTTTTTCATAATTTTACGGTCGTAATTAT
TCGTAGTTCCATTACTTACTCATTTCTTTTTTGTTGCATAAATTTACCGT
GGTAACCAAAAGCAAGAAAAGATTATGCTATTGTTTTAGAATTATGTTAT
ATAATTTAAGTTTTATGATAATTATTAGGAATAATCAGCATACTTTATGC
ATGGATCGCGCATCGTGAATCGTAAATCGTTAGATCGCACATCTTAAATT
ACACCAACCCATCAATTTGGATTTAAGATAAATCAGACATTTTTTTTTCA
TACACCTTTCCTACAATTCTGGAATAAAGTTATGTGATATATATTATTGC
TCTCCACTGTTTGGGGAGCCCATCAATAAAAATAATATGCTCTGTTTGTG
TCATAAAACATCTTAAAATTCAGTCAGTAGGTAATAAATTTTGTCTGATT
TAATTAAGATCTAGTATCTACATATGTCCAAATGAATTAAGTCAGTAATT
AACAATATAGGTGCTGCTATATCGTGCCCTAGCAGTTACATCAATATGCC
TTCTTACCTGTCTTTAAAAATATAAATAAAAGTAATCACGAAAAAGGACG
CAAAAAAAAAGACATAAGTGTGAGAACAGAGTAATCAAACTCGTTAGAAA
AAGTACCATTAGAAGTCATAAAAAATCAACCTGAATAAATGCANNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGCGTTTATTTATCCAGATGAAGATTAAGTGGTATCAGGCC
GATCCGTAGTCAATTTGTCTAAAGATTGGTACCTTTATCTTTTGAAAAAA
ATTCCAAAATTTGCAGTTTATAACAATTCAAATTTTCTATCAATTCAGTG
GATGTCAAAAAGTGTGTCAAAATCTAGCTAAAAGCATAACACGCACTGCA
CACAGAGCTTTTTAAAGGAGTGCTCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAGCATAACAAGCACTGCACACAGAGCTTTTTAAAGGAGTGCTCAT
TTCAATAGGAAAACAATGGTTGTTCTCTTGGGAGAAGTGCTTTCTAGAGG
TAGTTGGTTATCTATTATTTTTACATCGTTGGGTGACTTAACAAAAGAGA
CTTAACTCGATGTTACAATCCAATTATTGAAAGTTTGTCTCGGTCTTTTT
ATAATGAGCGAGACATACGTTCTCTGATTAAGCAATTTTCATATTGACAT
TTTCGAGGCATTTTGATGTAACTGCCTAGCCGAAAGAATTAGAATATTTT
TCAACTCTTCTCTCACTGCCTCGACATCACCAAATTAATGCAATCAGTGA
TTTGAAACCTGACTCCACTAACCACTATAAAGGCTGCAGAGCTGCTGAAA
AATTCCGTAGATTGAGTGAATTTATTAAGTGGCATATAGTTTATAACGCA
TATACAGACCTCATGGATTTGGTTATTCCATTTTAAACCATGCAGCACGT
GCGTTTGCGTAGGGTAAAATTGCAAATACTATACAGTATTATTCCATGAA
GAGATTACTTTTAAAAAAAATATTGGCCTTAATTGCTTGCTTTCAGTTCC
TGTAGCCAGTAGTGTGACCCCCTGTATTTCTATTTTATTATGCGTGGGTT
TTTCAATAGAGATGTCACATGACTCAAATCCCCGCAGTCTTATTGGACTA
GAGAAAGCGAAAGTGAAATCGCAAGATCTAATTGGATGAAAGAAAGACCG
TGGGAACTGGAACCGAAAATAATTCTCATTCTAAAACAAGATGGCGGCGA
GAAAAGCACGTCTTTTGCTTTGGACGAAAGGTTGTAAATTCTGGTTGATT
TTAAGGTTTTATCTTATGTTATATCATTTACTTAAATTAGTAGAGGCTTA
TTCAATGTTTGGGGAAGGTAAGTCTATAAAAGTTATTTGTTTTTCGGTGG
AAAAAAGTGTTTAAAAAAGCATTTTTGGTGCTCAAGGTTTATTCTTCTTT
GCAAAAATAGCGTTCCCAAACCAAACGCACGTTTGGTTTGGGGCTTCATG
CGTGTCTGATTTGGAAAGGCATTTGTCAATGTTCGATTGAAGAAATAAGT
TTTCGCCAATGTCTAAACTTTTGACTATTATCTAAAGAATTAGTACACCT
GTTTAAAGATCTGTAAAAAGCTCACTCCCAAATAGTTCTAGATTAAACCC
TGAAAATACCAAGATACTTTAGACGTAGAAACTTTCGCGAGCAGAAACTT
TCGCGATTTTCGCGAATTTTGGCCCTTTTCGCAAAAGTAAATGTCTTTAG
AAATTCTCGGAAGGGCCATTCGCAAAGTTTATGCTCGCGAAAAATTCTTG
ACAAAATAGAAAATCTGTAAAACTTCAAACTTTGAATAAAATGTAACTTT
TATGGCACTTTTTAGCCTGCTAAAAGACTAATAAATCAAAGGACAAATGT
TTCAAGTCAACCCAAGAAGTATTTGTGTCTCTAAGCCATTTTTTGGACCT
ACCCCGGTGGGCTGTAGGTCCTATGAATTAACCTCTGTTCGTTCGTCCGT
TCGTTACTAGCTTTTCTCGGGATTGGCTCATTAGTTTTTCCTAATTTTTG
GCACAAAGATGCAAAATGGTAATGCCCAAAATGTGACGGAGCCCGATTTT
CGAAAAAAATTCATTTCCGGCCGTATGCCGGAAAAACCGGTTTTTTGGCA
TTTTCTCGAGATTTCATCATTAGTTTTTTCTGATTTTTTGCACAAAGATG
CGTATTAACAATGTCTAAAACATGGCCTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTTGAGAAA
AATTCTATTCCGGCTGAAAATGCCGGAAATATCCCGGAAATCGCCATTTT
TGCAGATTTTCATCGGACTTTTTCCTTACATTTCGTTGTTTTTTCACACA
AAAACATTATTGATAGTAATGACTGATTTTTTTCTCCTCGCATTGCTATC
TAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTATGTGA
AAATTTACGTCTTGATTCGCGAAAGTTTCTGCTCGCGGAAGTTTGTACGC
CTAAAGTAATTGATAAAATATCCAATCTTTTAAATAAAGATAGAAGATAA
ATAATCATGAAGAAAAAACAAACCTTAAAAGCAGACAAATTGCCTATATA
GCTAATTTTTTCATGAAAAATAGAAAACTTTTGGATATTTGGGTTCTCAA
ACATTGTAGAATCTTTTAGTACACATGGCAAAAGAAAAAAAAATTAAAAC
CTTTTAAAATCAACTGTATTCTTTCCATAATCCATAAACATTGAAAAAAC
GTCCTTCCACCATTTTAATTTTTCAAAATGTCAAGTCGAAACTTCTTGTC
ATAAATTTTCCTTGCCCCCGTCCCAGCGACTTCGTTTTTCAGATTTTCCC
AGGGGGTTCTCTCCTCCTTTCCAGGGGTGTCGACCCCTTATTACCAGGGG
ATAGTTTGTTATCCAAAATTTCCAATTGGTTAGTGGTTAGTTTACTCCTC
CTTTGTAGACAATACATTTTCAAAATTCTCAATTGTTTGCTTTAATCACA
AGCACTAAGACCTTTGACTTCATTGAAGAAAAAGCAGAGAACCAACCCCC
TTTCCAGCATTTTTTTTTATATTATTATTAGCTTAGCAATATATACAATT
TAAAAAAGTTCTTTTGTTTTTATGCAGATTTCTGAGAACACTATGTCGTA
CAAAATATAAACATCTGGTGTTTTTTAATCTCCGTCTGTTGAGTCGAGTG
CACAAAACTGTTGTGTTTTCAAATTACAGACCGGTAAAGTAATTTGGGAT
TTACGATCTGCATTGGCTTCTTTTCACGCCAAGGTTGATAATTGCACTCA
GACAATTGTTTGCTGTTAAAGCTAAGTTAGCCTTATTTAAGAGGAATTCG
TAATCACTATGAAAAATATGGTGGCAACGCTTGCAAAAACACTGCTGTTA
TTGAAACAAATCATTAAAACAGAACACCACATGTAACAACCTGCACTGAT
TTTAAACTAAAGTGATTTGAATTGTGTGATTGAAACCCGTACAAAAGTAA
TGTGCTGTGTGTGGAGCTTTAATGCTACAGGCTTGTTCTACAGTCTGTAG
AGATGCCTCACAGAAAGTTTGACCGGCTAAAAACGCCAATTATGACGTTT
GCGTTGTGGAGTGCTATTGATTACTCTATTCAACAATGGAATGACGTTCT
AAAATTACATAATGTAGACCATCTATTAAGACCACTTCAACATTGAAATG
ATCAACATTGAAATGATCAAAATTGAAAATGTTGAATAAAAATTTAAACA
AATGGATTAAAATTTTAATGGCCCAATTTAATTTTTTCCAAGATCAGCCA
GCAGCTTCATTAGATTCGAATTCTTGCTACTAAATCAAAAGTGTTTTATA
GCCCAACTGAATTTTTTTCAACGAAGATTTATAAAAACGGTTTTTTTCCT
TCCAGATCTCTGAGAAGAACCCAAGCTCAGTCAAGAACTTTGGAATTTGG
TTGAGATACAACTCTCGAAGTGGAACCCACAACATGTACAGAGAATACAG
AGATATTACTGTCTGCGGTGCTGTTACTCAATGTTGTAAGTATCCTCAAC
ATTTTCATCAGTTATTTACTTTGGGTATATATCGAAAATTTGTCTGTCAG
CCCACTAAAAAAAATTTGTCAATTTTTAATCTGCCAATATAAGCTTTTCT
TCTGAAGCAAAAATTTAAGTGTAAACAAGTTTAATCTTAAGCTTTCTTGA
ATTTTTAGACCGTGATATGGCTGCTCGGCATCGTGCACGTGCTTCTTCCA
TTCAAATTTTGAAAATTGAAACTGTTGAATCCAGCAAAGTTCGACGTCCA
CAAGTCAAACAAATGATTGTAAGTTTACATTGACTTAAGCAGGCTTGTCT
AAATTTCTTTCCAAAGTTGATCTCTCTGTACTTAGTTATCAAAGTCTGTC
TCAATATAATATAAGCAGAGACAAAAAGCTGTAACTTTTGATAGAATTCA
AAGTAGATAGCGGTTCTGTGCTTGTTAAAAAGATAATTTGGAGTGGAATA
TTATCAGAAAAGAAAAAATTCAAAAAATGAAAAAACAAAGATGAAAAATG
AAAAAGAAGAAAATCATCTTCTTGTAGAATAATGCTATGATCTTCATTTT
TATATCAGAAATTCTTTAATTTTAGAACGTCATATGTTTTTTATTGTTTT
GAAGTCAATCAGTGGTAAAATTTGGACTATATATCTTTCAATGGAATAAA
TTTCTTTGAACATTTTTTTCATATTTAATGATGTTCTAAGATCCAAGAAT
CACTCGTGTGAAAACGATAATTATAACACAATTATTGGAGATGTTGATTT
TCTTCTTCTTTATTTTCCGATAACTTTTTAGTTTTTTCTTTTTGATAATA
TTCCACTCATGTTTATCTTTTCAACAAGCACAAAACAGCTTTTTAATTCT
ATCAAAATTTACATCCTTTTGTCCCAGCNGCACCTTTAAAAGTAATTTTT
GTTTAAAACAAGACTAGTTTTTATAAAAATTGGCGCTTTTGTAGATTTTT
CAGATTTTTTTCAAAAACTGTTTATCAAAAATGTCTAAAAATACCAGATT
TGATACCCCTTTTTTACATGTTCTCAACTTCAGTTGAGTTAGAATCTGAG
AATGTGTGTGTGTGTGTCTGTCTGTGTGTGTGTATGTCCCAAAACTTTGG
GGCAGCCTGGAGACTTCAAAAATTGTTCGATTTGGCTGAAATTTGGCACA
CTTGTTCCTTGGGTGAATATCTGGGGGTATTTTTTTAATTTTTCAAAAAT
TTTGATTTTTGGGGCCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAAAA
CTTTGGGGCAGCCTGGAGACTTCAAAAATTGTTCGATTTGGCTGAAATTT
GGCACACTTGTTCCTTGGGTGAATATCTGGGGGTATTTTTTTAATTTTTC
AAAAATTTTGATTTTTGGGGCCTGGGGACGAGTTTTTCGCCAAAACGAGG
CTAAAACTTTGGGGCAGCCTGGAGACTTCAAAAATTGTTCGATTTGGCTG
AAATTTGGCACACTTGTTCCTTGGGTGAATATCTGGGGGTATTTTTTTAA
TTTTTCAAAAATTTTGATTTTTGGGGCCTGGGGACGAGTTTTTCGCCAAA
ACGAGGCTAAAACTTTGGGGCAGCCTGGAGACTTCAAAAATTGTTCGATT
TGGCTGAAATTTGGCACACTTGTTCCTTGGGTGAATATCTGGGGGTATTT
TTTTAATTTTTCAAAAATTTTGATTTTTGGGGCCTGGGGACGAGTTTTTC
GCCAAAACGAGGCTAAAACTTTGGGGCAGCCTGGAGACTTCAAAAATTGT
TCGATTTGGCTGAAATTTGGCACACTTGTTCCTTGGGTGAATATCTGGGG
GTATTTTTTTAATTTTTCAAAAATTTTGATTTTTGGGGCCTGGGGACGAG
TTTTTCGCCAAAACGAGGCTAAAACTTTGGGGCAGCCTGGAGACTTCAAA
AATTGTTCGATTTGGCTGAAATTTGGCACACTTGTTCCTTGGGTGAATAT
CTGGGGGTATTTTTTTAATTTTTCAAAAATTTTGATTTTTGGGGCCTGGG
GACGAGTTTTTCGCCAAAACGAGGCTAAAACTTTGGGGCAGCCTGGAGAC
TTCAAAAATTGTTCGATTTGGCTGAAATTTGGCACACTTGTTCCTTGGGT
GAATATCTGGGGGTATTTTTTTAATTTTTCAAAAATTTTGATTTTTGGGG
CCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAAAACTTTGGGGCAGCCT
GGAGACTTCAAAAATTGTTCGATTTGGCTGAAATTTGGCACACTTGTTCC
TTGGGTGAATATCTGGGGGTATTTTTTTAATTTTTCAAAAATTTTGATTT
TTGGGGCCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAAAACTTTGGGG
CAGCCTGGAAACTTCAAAAATGGTCGGATTTGGCTGAAATTTTGCACACT
CGTTCCTTAGGTGAATATCTGGGGGTGTTTTTTTCATTCTTTGAAAATTT
TGATTTTTAGGGCCTGGGCACGAGTTTTTTGCCAAAACGAGGCTAAAAAT
TTAGGGCAGCCTGGAGACTTCAAAAATTGTTTGATTTGGCTGAAACTTTG
CACACTTGTTCCTTGGGTGAATATCTTGGGGCGCTTTTTGCATTTTTCAA
AAATTTTGATTTTTGGGGCCTGGGAACGAGCTTTTTGCCAAAACGAGGCT
AAAGCTTTGGAGCAGTCTACAGGCCTCCAAAATGATCGGATTTGGTTGAA
ATTTGGCACACTTGTTCATTGGGTGAATATCTGGGGGTCTACAATTGGGC
CTATGAATGATTTGAAGCCACTGAAGTTGAGCCCAGTGCGTTGCGCACGT
TCGACTATTTTTTACACTTTCCGAAAAGTGAATTTTGACTTTAAAAGCTC
ATATAGAGAACAAATCGGTCAAATTTAAAAAGTGATAGCTCAAATTTTAA
GTTAGGATATCTACTTTCTAAATATCTAAACTCCAAGCACTTTAGGACAT
TTGTTCGGCCTCAAGACGTCGAGAAACGTCTGAACTTTTTCGTGGGTCAC
CCGGTATAGTGTATAGTGCAATCCGATAATCCCCTTCTCGCCGCTACCCC
CTTCTAAAAATCAATCCCTTTGTTTTCTCTCTCTCTCTATTTGTTTATGG
TAAATGGAAAGGGAACAGTAATTAGTTGTAAATGTAAGCCCCCCCCTTCT
TCACTTTTTTGGAAGGTGTCATCCCCCCCTTAAGAAAGGGGGGTCCGAAC
TATGATGTATTTGCACTGTTGAGGACGGTAGAGTGACTGAATTTATTTGA
AATAACCAGCAATTCTAACCCACAAAATCGAGGACAGTAGAAAGTGCTTA
TTTGCTTTCTTCGTTGCTGAAAAGCACATACATAACCTCGGTACAACTTG
TGCTGTGGTAGTTGTTCAATTCGAAGGTTTTTAATCATTTTGTGTGGTCC
CTCAATTCTTGCAAACGGTGCCTGTTTCCAAATGATGATCATTTTGTGCC
AGATTTTAAATGATGGTTATGATTTAATGAGCCTGATGGAAACATTTCTA
AACAAAGTATTATATTTTTCTCATCTTCAGTTGAGCTAGAACCTGAGAAT
GCGTGTTGTGTGTGTCGGCTAAAACCTTCGAAGGGGGTAGCCTGGAGACT
GTCTAAACTGGCAGTGGCGATAAAGAGAGGGTTAAAAATTTGATTTTCAG
TAGTTTCCGAATTTCCTATGAGGGATTGGATTTCTAAATACCCCCTTCTC
CCTTTTTTAGCTTAAAATTTTTTTCAGGAAATTAAAAACTAACAAATGAG
GGGATATTGGGCACCTTGTATAATTGAACTTTCAAATAATTATTTTCCCT
CTGTGAAATGCACAAAAGTTGGCTATGTCGTATCACATTTTTGCACTTCG
GGTGTTTGAATACTCGGTCTGTTGAGTCGAGTACACAAATCGTTGTTGTG
TTTTCAAATTACAGACCGGTAAAGTAATTTGGGATTTACGATCTGCATTG
GCTTCTTTCCACGCCAAGGTTGATAATTGCACTCAGACAATCGTTTGCTG
TTATAATGTGACAACTCCTCGTTCTCAAATTTGGCACATTTTCCTGACTT
TGACAACATACTACTTTCAATGTTCACTCACTTAAAGAGACATAACAGTA
CTCGCGAAATTTGTAAACAAACTGTATGCAGCGGATACAAAATCAAAACA
AATGTCACGTGTCAAAATAAAAAATCAAACCAAATATGGCCAATTTTGAT
TGTTCAATTGTTTTACAAGTTTGTTTTGTACACATGATTTTAATTGTTCT
CTTTAATGACACGTGGTTCGCGCAATGTTTACATTTTACTAGTATAAGTT
GACTTGTTGCCATCTTTAATCGAATGGACTAAATTATATTATTATATACC
TGTAGGCAAAAACAGCCATTGAATAATTCCTGATATACCATGGCTATTAT
ACCACGTTAGAATTTTTTTTCAAATTTTGCTTTCAAAGTTTGATTTTTTT
GTTGCTCTTGTTGTTATCAAAGAAATTCATTAAAATATATAAATCCCTTG
TCAATTTCATAAACAAATTTTATGACTCTAAGTAATTAAGAAAATCATTA
AAAAAAGAAAAACATTCGAACGTTCGATTATGGGAGTGTTTTAAGTGAAA
CGTTTGGCCATTGACATAATTAATGTTTTATTTTTGCCCGGAGGTATATA
ATAAAACATATATTCAGTAGGTTTTCGTTGGTTATCTATATATTAATAGC
CGTAGTCTGTATGTCGTTTTGTATGTTTGTCTGTTATACTTTCGTTTTCG
CACGCAATGTTTTTGTTCTTCCAAAAGATAACTTTTAGTTCTTGCTCCAC
AAATTTGTTTAACGATATTCGCGCCGTTTTATAAAGACTTTGTTTTGATT
GATAGGTTAGATTTGTTCTTTTTGGACCTACCTCCGGGTGCCCCGGTGGA
GGTTCTATAAATTAACCCATGTCCGTTCGTTCGTTCGTCCGTCCGTCTGT
TACCAGCTTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCAAAGTTTTCCTAAACATCAAGAACTACGACAAATATAACGCG
AGCGAAGCGAGAAAAAAAATCTAATTGCAGAGCCGTCTCGGACGTCGCCG
GTATGGTGTAATTTGGGAATGACGCCCTTTCTGTTTTCTGATCATTTTTG
CTACAAAAATCTTTTTCAAAATATGGTTAAAAGATATGTCACCCGGGAGG
GATAGAGTCAAACTTTGAAGAGAATTCTTCCCTTTGATTTTGATTTCATC
GTGTTTAAGCTACCTTCCCAACATCTCAAAGGACTTTAAATGCGTTCAGC
AAACAGCTAAACCGGCGTGCGACGCCGGGTACCGGCTAGTTGGATTTATT
AACCCTCGGTGATGTATATTCAACTCGGCTTCGCTTCGTTGAATATTACA
TCACCTCGGGTTAATAAATCTCAATAACCAACTTTTACCCATTGAATATC
TGCTTATTGTTCTATTGTTTCTTTTCAGAACTCGAAATTGCGATTTCCAC
TTCCACACAGAGTTATGCGCTCTCAATTCCGATCGACCTTCCAAGCTCAC
CGACCACACACTCATTTGTAATTTATAATTATTAATAAAAGATGAATTAT
AAATGGGAAATTTATCAAGCGTGTGTTTATTACTGCCTTGCTAAAAATGA
AAGATCCTCGATTCCAATAATGAGTTTTTGGACCTACCCCGGTGGGGTGG
AGGTCCTATAAATTAACTTGTGTCCGTTCGTTACCAACTTTTCTCAGGAT
TGAATCATAGGAATCTTTTGATTTTTGGTACAAAGGTGCAAAATGGTGGT
GGGTCATTTTAAGCTATTTTCCTTTATAGCCTCTCAAATATTGACTTTTT
GGAATCCTTGGATAAATATCTTTCATTTGAGCCATATATGAGCTTCAAAT
TTTCACTTTCATTTACAAGCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006286XLOC_006286Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011233-exon-sc0000122-1575043694:290380..290570TCONS_00011233-exon-sc0000122-1575043694:290380..290570Clytia hemisphaericaexon
TCONS_00011233-exon-sc0000122-1575043694:289946..290125TCONS_00011233-exon-sc0000122-1575043694:289946..290125Clytia hemisphaericaexon
TCONS_00011233-exon-sc0000122-1575043694:278936..279065TCONS_00011233-exon-sc0000122-1575043694:278936..279065Clytia hemisphaericaexon
TCONS_00011233-exon-sc0000122-1575043694:278653..278762TCONS_00011233-exon-sc0000122-1575043694:278653..278762Clytia hemisphaericaexon
TCONS_00011233-exon-sc0000122-1575043694:271348..271792TCONS_00011233-exon-sc0000122-1575043694:271348..271792Clytia hemisphaericaexon
TCONS_00011233-exon-sc0000122-1510915933:290380..290570TCONS_00011233-exon-sc0000122-1510915933:290380..290570Clytia hemisphaericaexon
TCONS_00011233-exon-sc0000122-1510915933:289946..290125TCONS_00011233-exon-sc0000122-1510915933:289946..290125Clytia hemisphaericaexon
TCONS_00011233-exon-sc0000122-1510915933:278936..279065TCONS_00011233-exon-sc0000122-1510915933:278936..279065Clytia hemisphaericaexon
TCONS_00011233-exon-sc0000122-1510915933:278653..278762TCONS_00011233-exon-sc0000122-1510915933:278653..278762Clytia hemisphaericaexon
TCONS_00011233-exon-sc0000122-1510915933:271348..271792TCONS_00011233-exon-sc0000122-1510915933:271348..271792Clytia hemisphaericaexon
TCONS_00011233-exon-sc0000122-1491911889:290380..290570TCONS_00011233-exon-sc0000122-1491911889:290380..290570Clytia hemisphaericaexon
TCONS_00011233-exon-sc0000122-1491911889:289946..290125TCONS_00011233-exon-sc0000122-1491911889:289946..290125Clytia hemisphaericaexon
TCONS_00011233-exon-sc0000122-1491911889:278936..279065TCONS_00011233-exon-sc0000122-1491911889:278936..279065Clytia hemisphaericaexon
TCONS_00011233-exon-sc0000122-1491911889:278653..278762TCONS_00011233-exon-sc0000122-1491911889:278653..278762Clytia hemisphaericaexon
TCONS_00011233-exon-sc0000122-1491911889:271348..271792TCONS_00011233-exon-sc0000122-1491911889:271348..271792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:271348..290570 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.5367	48.0505	52.5104	58.4952	44.8005	28.1606	44.4323	41.7045	113.452	122.227	124.35	164.026	174.912	179.631	117.063	114.78	115.268	119.212	69.0829	82.2333	75.4919	80.8837	52.2184	59.4641	129.967	116.88	97.008	96.8167	53.2533	59.1267
Blast
[Close]
BLAST of TCONS_00011233 vs. Swiss-Prot (Human)
Match: RL18A (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 4.577e-80
Identity = 114/174 (65.52%), Postives = 139/174 (79.89%), Query Frame = 3 
Query:  174 MKCKGELKEFKIIGRRVPTAKVPKPPLFRMRIFAPDVVAAKSRFWYFMALHKKLKKTVGEIVACSQISEKNPSSVKNFGIWLRYNSRSGTHNMYREYRDITVCGAVTQCYRDMAARHRARASSIQILKIETVESSKVRRPQVKQMINSKLRFPLPHRVMRSQFRSTFQAHRPHT 695
            MK  G L+E+K++GR +PT K   PPL+RMRIFAP+ V AKSRFWYF++  KK+KK+ GEIV C Q+ EK+P  VKNFGIWLRY+SRSGTHNMYREYRD+T  GAVTQCYRDM ARHRARA SIQI+K+E + +SK RRP VKQ  +SK++FPLPHRV+R Q +  F   RP+T
Sbjct:    1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNT 174
The following BLAST results are available for this feature:
BLAST of TCONS_00011233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL18A4.577e-8065.5260S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
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