TCONS_00011231 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011231
Unique NameTCONS_00011231
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1683

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011231 ID=TCONS_00011231|Name=TCONS_00011231|organism=Clytia hemisphaerica|type=transcript|length=1683bp
TAATAGAGGCAGCTTTAGCTAAATATAACACGGGCTGTTTTTGTCCACGG
AATTTCGGAAGACACCTAAAAAATTGAGCATCGGTTATCCTAGAATTGCT
GTACAACAAGACATGCTTCCGAAAGATTGGAACCGAGTTTACGGCATCTC
CTCAGCATTGTTAACTGCTTTCATTTTTCAAGCAGCAAATATTTGTATGA
ACCACACGTTTCTGAAATATCCGACATTGGAATTGGCTCTCGATTCCGTT
CTCATTAGAGGACTGGTTCAGACCGTATCGAGCTCAACAACGTTACTGAT
AAACCGAATCAACCCGATTTTGAAGTTATCAACCATTTGTACTCTCGTTT
CTACAGGTATGATGAAGAGTGGGGCGGCTGTAGCATTTCACTACGCCCTA
GGTATGGCGGATTTGAGTACCATCAGTACAATCTACGCCCTTCTACCGTT
CGTCACCATTCTTATTGCCAGATTGGTCCTCAAAGAAAAGATCACAGTTT
TTGAGATCATTTTGAGTACATTGTGTTTTGGTGGGATAATGTGTACCGTC
TATTCTACACAACCAAAAGGATCACACAAACTTGGGACATACATACTCGG
AGTAATCCTTGTATTTTTTACCGTTGTTGGGAACAGCGCATTTTATGTTT
ACGTTCGTTACAACACGTTAAAACAAGAAAGATCTCAAGATGTAAACGAT
TTACCACAAACACTGCATTCAGATGACAAAAACAACAATGAGCGTGGGAA
ACCCTTTACACAAGAATCGCTTACAACTGATCATAAACTTTTTCTTGAAA
CACAAGAAAATACTAGCAAATTAAGTGAAGAAAGCGAGAAATATAAAGAT
ACTTCAGCAGACCATGAAAAATCTCACGAGTCAGACGTAGACTACAGACT
ACCTATATTTTACTCAAGCGTAGGCTATCTGCTCTGGTACCTTCTTATTC
GTCTCATTACACAACAGCCATTCAAAATCTGCTTAATCGCTGACGAATAT
CTTGTTCTATTGCTCATTGGTGGGACTCTGTATTACATAGCTACCATTTT
TGATGTGGTTTGTTTACTTTACGGAAGTGCTTCCATGACAACCATGCTTA
AAAATACAGACCTGTTATGGGGCTATTTCTTTAACATGACTGTCAATAAA
ATGATCCCGAACTTATTGGGTTTGTTTGGATTTAACGAACATCGGTATTG
CGCTATACGCTTTTTATAAATGGGAATcaacttcttttctttttaaagaa
gtTTGATAAAACTCAAAACGGAATGTCTTCTAAATGTTACATCACTGACC
CAGCATCGAAGACGttgcagtgatgcatatcatgaataaatatATCCTCG
ACAATCGGAAGAAATAAGGACCCTATCGGCCTGTGGATTTAATGGCGATG
TTTATTTACTTGTTCAAGGTTCTCTAGAGGGCAATCTGTGCAGCCTTAAA
CCTAAAACAAACTTTAAGGGGCTTCATTTCTGTCCTGGTTTTATCCTTAC
AGTCAGTGAAATACGCATAATTATAATGGTGCAGTGCATTTTTCTTTAGT
GGTACCTAGGGTACTAGGAGAAATCcttatcttttattttttcgttcact
CTTACCCACGATCGGCTTCTTTCTCCTGTTTTTATCTCTCTATTATTTGT
CtccagtttttttcttattttctctcAGGGTCT
Run BLAST on NCBI

transcript from alignment at sc0000122:260166..263105-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011231 ID=TCONS_00011231|Name=TCONS_00011231|organism=Clytia hemisphaerica|type=transcript|length=2940bp|location=Sequence derived from alignment at sc0000122:260166..263105- (Clytia hemisphaerica)
TAATAGAGGCAGCTTTAGCTAAATATAACACGGGCTGTTTTTGTCCACGG
AATTTCGGAAGACACCTAAAAAATTGAGCATCGGTTATCCTAGAATTGCT
GTACAACAAGACATGCTTCCGAAAGATTGGAACCGAGTTTACGGCATCTC
CTCAGCATTGTTAACTGCTTTCATTTTTCAAGCAGCAAATATTTGTATGA
ACCACACGTTTCTGAAATATCCGACATTGGAATTGGCTCTCGATTCCGTT
CTCATTAGAGGTAAGGTTGTTTCAACGTTCATCTAACGTTTTATGGTTGT
TTCAACGTTCATATAACGTTTTATGGTTGTTTCAACGTTCATATAACGTT
TTATATGGGGGCTGTCGAGACGTTAAATTGAAAATGTTTTGAGGCGTTCT
GTGGAGGATTTATGGATATTTATTTACGAAATTCTTCAATGGTCCACGGT
TCTGAAGACAAAAAATTGGAAATACGAGGGTCTATAAATTGTCGGTGTTA
TAAATTTTACCAGGAGTCTGTATTTTCGTTGTCTAAGCCAGTCTCTTAGT
TTGTTTTGATTCGACTTTGATGAGGCTCATGAAAGGTACTTGGCGTTGTC
GATTGTATCACTTCCATCAGTAAAACGAAAAATTAATGGAAGTGGTTCTG
GGTACCAAATCGTTAGATAACTTGCTTGCTGTGAATATTTCTATTTCTCT
CTTTTCAGGACTGGTTCAGACCGTATCGAGCTCAACAACGTTACTGATAA
ACCGAATCAACCCGATTTTGAAGTTATCAACCATTTGTACTCTCGTTTCT
ACAGGTACAACCGGCCAAATTAGGTTTATAAAATCATTTAAGGAAATTGT
GCAACCTTGTCCCTTTGAAAATTTGATTATTATAGAGGGTTGTTGAGTAC
GACCGTCAAAATTATCAAAAAGTGAGAATCGTTTAGTTGTGCTCATTATT
CTTGACCCCTATACAGTATAGGCGTAGCGAGATTTAAATTTATGAGGGAG
TGCAGACGTCGTTTATGACATATTCATTATCTTTTGATAAAACAAAGACA
TTAATGATTACAGTGTCGTAAAAACTGCTCTTGTACATAAATTTTGCAGG
GTATCTCGCTACGGCTATGTTTCTAGTATTTTTTTGATTCAGACCTGTAT
ATGTGTTCTGAATGTTTAAAACAGTATTTATGATTTTAAGGGGTTTGCAG
TTATATCAACAATTTCTCCTATTTTGAGGCTCTTTTTCTTTAAAGGTTAT
ATTTTTACATAAGTGTTCCCGTTTCATATCAGAACAGTGTCTGTCTATTG
TTATATTATGTTGATATAAGCAAAAAAAATATTTTTCTTTTCCTCTTTCT
GATCAATCTTGTTCCACATCTTTGCCAACCGAGGTCAAAAAGCTTGTGAA
TTTCGATTTTCTTATCTAAATCTATGTAACATCCTTTATCCGGGTATCCT
AAAGTTAATCGACGTTCATCGAGTGCGATTGCATGGTAAAAATCAATTCG
CTTAATCATTACAGGTATGATGAAGAGTGGGGCGGCTGTAGCATTTCACT
ACGCCCTAGGTATGGCGGATTTGAGTACCATCAGTACAATCTACGCCCTT
CTACCGTTCGTCACCATTCTTATTGCCAGATTGGTCCTCAAAGAAAAGAT
CACAGTTTTTGAGATCATTTTGAGTACATTGTGTTTTGGTGGGATAATGT
GTACCGTCTATTCTACACAACCAAAAGGTAATTCCAGTGTTTTCAATCCA
AAAGAACGCTATTCTTATTATACTTGTAACTTTAAACTGTAAAGTAAATT
TTACAAATATTTCCTATATCATTCAGGATCACACAAACTTGGGACATACA
TACTCGGAGTAATCCTTGTATTTTTTACCGTTGTTGGGAACAGCGCATTT
TATGTTTACGTTCGTTACAACACGTTAAAACAAGAAAGATCTCAAGATGT
AAACGATTTACCACAAACACTGCATTCAGATGACAAAAACAACAATGAGC
GTGGGAAACCCTTTACACAAGAATCGCTTACAACTGATCATAAACTTTTT
CTTGAAACACAAGAAAATACTAGCAAATTAAGTGAAGAAAGCGAGAAATA
TAAAGATACTTCAGCAGACCATGAAAAATCTCACGAGTCAGACGTAGACT
ACAGACTACCTATATTTTACTCAAGCGTAGGCTATCTGCTCTGGTACCTT
CTTATTCGTCTCATTACACAACAGCCATTCAAAATCTGCTTAATCGCTGA
CGAATATCTTGTTCTATTGCTCATTGGTGGGACTCTGTATTACATAGCTA
CCATTTTTGATGTGGTTTGTTTACTTTACGGAAGTGCTTCCATGACAACC
ATGCTTAAAAATACAGACCTGTTATGGGGCTATTTCTTTAACATGACTGT
CAATAAAATGATCCCGAACTTATTGGGTTTGTTTGGATTTAACGAACATC
GGTATTGCGCTATACGCTTTTTATAAATGGGAATCAACTTCTTTTCTTTT
TAAAGAAGTTTGATAAAACTCAAAACGGAATGTCTTCTAAATGTTACATC
ACTGACCCAGCATCGAAGACGTTGCAGTGATGCATATCATGAATAAATAT
ATCCTCGACAATCGGAAGAAATAAGGACCCTATCGGCCTGTGGATTTAAT
GGCGATGTTTATTTACTTGTTCAAGGTTCTCTAGAGGGCAATCTGTGCAG
CCTTAAACCTAAAACAAACTTTAAGGGGCTTCATTTCTGTCCTGGTTTTA
TCCTTACAGTCAGTGAAATACGCATAATTATAATGGTGCAGTGCATTTTT
CTTTAGTGGTACCTAGGGTACTAGGAGAAATCCTTATCTTTTATTTTTTC
GTTCACTCTTACCCACGATCGGCTTCTTTCTCCTGTTTTTATCTCTCTAT
TATTTGTCTCCAGTTTTTTTCTTATTTTCTCTCAGGGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006286XLOC_006286Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011231-exon-sc0000122-1575043694:262846..263105TCONS_00011231-exon-sc0000122-1575043694:262846..263105Clytia hemisphaericaexon
TCONS_00011231-exon-sc0000122-1575043694:262302..262397TCONS_00011231-exon-sc0000122-1575043694:262302..262397Clytia hemisphaericaexon
TCONS_00011231-exon-sc0000122-1575043694:261379..261591TCONS_00011231-exon-sc0000122-1575043694:261379..261591Clytia hemisphaericaexon
TCONS_00011231-exon-sc0000122-1575043694:260166..261279TCONS_00011231-exon-sc0000122-1575043694:260166..261279Clytia hemisphaericaexon
TCONS_00011231-exon-sc0000122-1510915933:262846..263105TCONS_00011231-exon-sc0000122-1510915933:262846..263105Clytia hemisphaericaexon
TCONS_00011231-exon-sc0000122-1510915933:262302..262397TCONS_00011231-exon-sc0000122-1510915933:262302..262397Clytia hemisphaericaexon
TCONS_00011231-exon-sc0000122-1510915933:261379..261591TCONS_00011231-exon-sc0000122-1510915933:261379..261591Clytia hemisphaericaexon
TCONS_00011231-exon-sc0000122-1510915933:260166..261279TCONS_00011231-exon-sc0000122-1510915933:260166..261279Clytia hemisphaericaexon
TCONS_00011231-exon-sc0000122-1491911889:262846..263105TCONS_00011231-exon-sc0000122-1491911889:262846..263105Clytia hemisphaericaexon
TCONS_00011231-exon-sc0000122-1491911889:262302..262397TCONS_00011231-exon-sc0000122-1491911889:262302..262397Clytia hemisphaericaexon
TCONS_00011231-exon-sc0000122-1491911889:261379..261591TCONS_00011231-exon-sc0000122-1491911889:261379..261591Clytia hemisphaericaexon
TCONS_00011231-exon-sc0000122-1491911889:260166..261279TCONS_00011231-exon-sc0000122-1491911889:260166..261279Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:260166..263105 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.144414	0.117355	0.163513	0.079986	0.714085	0.615578	0.247556	0.231759	0.283955	0.175862	0.707169	0.208388	0.224106	0.398976	0.0410016	0.0733349	0.433645	0.0925983	0.0255859	0.133869	0.18617	0.170264	0.524344	1.20431	2.37745	1.3146	0.0330034	0	0.0267147	0.0544362
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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