TCONS_00011229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011229
Unique NameTCONS_00011229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2184

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011229 ID=TCONS_00011229|Name=TCONS_00011229|organism=Clytia hemisphaerica|type=transcript|length=2184bp
GTCCTATTTTGTTGGGTACTACAAGCTGTTTCAACGTCCAACTAACATCC
GTCATATAAcataaattgaatgttgaccTTTGTTGGTCCAATTATAATAC
TCTAACAATGAATTAAAATCGGTCAGAATACTTGTGCTGAGCTTTGAACA
TATCTTCTCAATTAAGTCTCTATAATAATTTTTTGactataaaagcaaaa
aaaacttccCTAATTCATAAAGTACTATATTACATTTTTATACATAAAAT
ATAAATCGTTTTTTTGGTTACAAATTATTCTCATTGcaatctaaattttt
caatcaaaatattatttattaAACTGGCAAATATACATATATATATTTAA
TAAATTACGTAGATAAATAGAGTACAGCCCAAAACCTAAAACTAAGATTC
CTCGTAATGCAATCAAACCTTTTCCTCTTTTTCAACTTAGAGCTTCATAA
AATTGTTCGAAGGGGCTTTCATCAATTCgaagaatttattttgaaagaaa
tttagtAGTAGGTTTTGGTCAACTTCCAAAATCGAAACAAATGATAAAAC
TCCTAAAATGAGCTTCTACacgcttatttttttataagaaccagtaaatt
tcgGTTGAgcctcagattgttcttaatttacTATTGTTCTGAGGCTGGtg
ttctcaaaaaaattgttcttataaacaaaaaagtgTGTACCCGAGAAATC
GGGGTTGGGTAAAtaaaataatcctaaaaataaATACCACAtcataaaaa
tgtgtattttttcaataaaaagacaGCACAGCACGTAAACTTATATACAA
AAAATAACACACAAATTACAGCTCACTGCACAAACATTAAGTTGATTGTA
CAGAGGAAcccaaaaaaattcaataaaaatgtcTACATTCATTTGAGGGA
TAAAGACTCTCTAATATAGAGAAAATTTAAAGTTCAAAGCATCAAAACAC
ATCAAATCATATCAAATCTTAAAAGTTATCAAATAAAATCCAGATTCCAG
TACCGTTTAAATCCAAATCAATATTCATTCAAATTAGTGAACGACAACGC
GATTGACTTTACCAGGCGCAgtagacatgaaaacaaaattttgtgttttc
aaAGGCATCGAATCACCATTTTGTTGTTGGCTGTTGACCACTTCTGTGGC
GTGTTGGGGTGGCGGTGCCACTTTGGTGGGTGGTGTAGGATATGCTGGAA
GGCTGTTACCCAGCGATTTGACAGGTGGCGATGGAAAAGAGGGTGGGGCG
GTGTTATCGTTTGTGGCGTTTGTGATTTCCGGTTTCAGGTCTGTAGAGTT
GGGAGCTGGAATGTGGATGCGTTGGAAACTTGGTTGAACGACCAAATTCT
TCATGTCTGAAGTAATGACGTTGATTTCCATTGGGGGATTAGGGGTGGTG
GGCGTTGAAGGTGGAGTTGGGGCGTTATCATAAAGTGGTACGCCGTTGAA
GAAAATTGGAGACGGTTTCAATTTGTTGTTGGTGGAATTGAGCGGCGCTA
ATGGCTGAGGGTGAGGATAAGCGTTAACGAAGTTGGTGTTTTGAGGTAAA
AATGCATTTTGCGGATAAAGGTAGCCATTGTTGAGGTAAAAATGCATTTT
GCGGATAAAGGTAGCCATTGTTGAGGTGGACAATCTCGGTTGAAGATGGT
AGAAGATTTTGAAAGACGCCATTACCGGCATTAGTTGTTGGTGGTAAACC
AGTGTTCGATTTGTTGAATTCGTTTTGTTGATTATCGACCATGTTTTGAT
TGTTGATGATGGTTGGTGTGAGTTCAGTCAACTGTTGGTTCGTATTAGGT
GTTTGAGGTAAAGGTTGAAGTGGTTGGAAATTGTTCGAGTCGTATTTGCT
GGTCGGTGAGTAGATATTATTGGAGTTTGATTCAACAGAGTTGTTGGTTT
TGTTTTCGTTCGAAATGTTGGATGAATTCGGTGAGTCAGGAGGTGATAAC
ATGGGAACGAGGTTAGGGTCCATGTTAGCGTCTGGGTAGATGATTTCGGG
ATATGTTTTCTGCTGGTAGGTTGGGATGTTGGGGTACCATGTGAACAAGC
CGTCTGGTGAAACAACGCAAGGCATGGAGTAGTATTGCGGAGCCATTGGA
GTGTTGACGGGGATAAAGTTTTGTTGCGGGTGCATCGGCTGATGTGAGAA
TGGGACATGTCGGTTGCGGAATGATTTGCCTGAA
Run BLAST on NCBI

transcript from alignment at sc0000122:155523..158559-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011229 ID=TCONS_00011229|Name=TCONS_00011229|organism=Clytia hemisphaerica|type=transcript|length=3037bp|location=Sequence derived from alignment at sc0000122:155523..158559- (Clytia hemisphaerica)
GTCCTATTTTGTTGGGTACTACAAGCTGTTTCAACGTCCAACTAACATCC
GTCATATAACATAAATTGAATGTTGACCTTTGTTGGTCCAATTATAATAC
TCTAACAATGAATTAAAATCGGTCAGAATACTTGTGCTGAGCTTTGAACA
TATCTTCTCAATTAAGTCTCTATAATAATTTTTTGACTATAAAAGCAAAA
AAAACTTCCCTAATTCATAAAGTACTATATTACATTTTTATACATAAAAT
ATAAATCGTTTTTTTGGTTACAAATTATTCTCATTGCAATCTAAATTTTT
CAATCAAAATATTATTTATTAAACTGGCAAATATACATATATATATTTAA
TAAATTACGTAGATAAATAGAGTACAGCCCAAAACCTAAAACTAAGATTC
CTCGTAATGCAATCAAACCTTTTCCTCTTTTTCAACTTAGAGCTTCATAA
AATTGTTCGAAGGGGCTTTCATCAATTCGAAGAATTTATTTTGAAAGAAA
TTTAGTAGTAGGTTTTGGTCAACTTCCAAAATCGAAACAAATGATAAAAC
TCCTAAAATGAGCTTCTACACGCTTATTTTTTTATAAGAACCAGTAAATT
TCGGTTGAGCCTCAGATTGTTCTTAATTTACTATTGTTCTGAGGCTGGTG
TTCTCAAAAAAATTGTTCTTATAAACAAAAAAGTGTGTACCCGAGAAATC
GGGGTTGGGTAAATAAAATAATCCTAAAAATAAATACCACATCATAAAAA
TGTGTATTTTTTCAATAAAAAGACAGCACAGCACGTAAACTTATATACAA
AAAATAACACACAAATTACAGCTCACTGCACAAACATTAAGTTGATTGTA
CAGAGGAACCCAAAAAAATTCAATAAAAATGTCTACATTCATTTGAGGGA
TAAAGACTCTCTAATATAGAGAAAATTTAAAGTTCAAAGCATCAAAACAC
ATCAAATCATATCAAATCTTAAAAGTTATCAAATAAAATCCAGATTCCAG
TACCGTTTAAATCCAAATCAATATTCATTCAAATTAGTGAACGACAACGC
GATTGACTTTACCAGGCGCAGTAGACATGAAAACAAAATTTTGTGTTTTC
AAAGGCATCGAATCACCATTTTGTTGTTGGCTGTTGACCACTTCTGTGGC
GTGTTGGGGTGGCGGTGCCACTTTGGTGGGTGGTGTAGGATATGCTGGAA
GGCTGTTACCCAGCGATTTGACAGGTGGCGATGGAAAAGAGGGTGGGGCG
GTGTTATCGTTTGTGGCGTTTGTGATTTCCGGTTTCAGGTCTGTAGAGTT
GGGAGCTGGAATGTGGATGCGTTGGAAACTTGGTTGAACGACCAAATTCT
TCATGTCTGAAGTAATGACGTTGATTTCCATTGGGGGATTAGGGGTGGTG
GGCGTTGAAGGTGGAGTTGGGGCGTTATCATAAAGTGGTACGCCGTTGAA
GAAAATTGGAGACGGTTTCAATTTGTTGTTGGTGGAATTGAGCGGCGCTA
ATGGCTGAGGGTGAGGATAAGCGTTAACGAAGTTGGTGTTTTGAGGTAAA
AATGCATTTTGCGGATAAAGGTAGCCATTGTTGAGGTGGACAATCTCGGT
TGAAGATGGTAGAAGATTTTGAAAGACGCTATTACCGGCATTAGTTGTTG
GTGGTAAACCAGTGTTTGATTTGTTGAATTCGTTTTGTTGATTATCGACC
ATGTTTTGATTGTTGATGATGGTTGGTGTGAGTTCAGTCAACTGTTGGTT
CGTATTCGGTGTTTGAGGTAAAGGTTGAAGTGGTTGGAAATTGTTCGAGT
CGTATTTGCTGGTCGGTGAGTAGATATTATTANATCAAAACACATCAAAT
CATATCAAATCTTAAAAGTTATCAAATAAAATCCAGATTCCAGTACCGTT
TAAATCCAAATCAATATTCATTCAAATTAGTGAACGACAACGCGATTGAC
TTTACCAGGCGCAGTAGACATGAAAACAAAATTTTGTGTTTTCAAAGGCA
TCGAATCACCATTTTGTTGTTGGCTGTTGACCACTTCTGTGGCGTGTTGG
GGTGGCGGTGCCACTTTGGTGGGTGGTGTAGGATATGCTGGAAGGCTGTT
ACCCAGCGATTTGACAGGTGGCGATGGAAAAGAGGGTGGGGCGGTGTTAT
CGTTTGTGGCGTTTGTGATTTCCGGTTTCAGGTCTGTAGAGTTGGGAGCT
GGAATGTGGATGCGTTGGAAACTTGGTTGAACGACCAAATTCTTCATGTC
TGAAGTAATGACGTTGATTTCCATTGGGGGATTAGGGGTGGTGGGCGTTG
AAGGTGGAGTTGGGGCGTTATCATAAAGTGGTACGCCGTTGAAGAAAATT
GGAGACGGTTTCAATTTGTTGTTGGTGGAATTGAGCGGCGCTAATGGCTG
AGGGTGAGGATAAGCGTTAACGAAGTTGGTGTTTTGAGGTAAAAATGCAT
TTTGCGGATAAAGGTAGCCATTGTTGAGGTGGACAATCTCGGTTGAAGAT
GGTAGAAGATTTTGAAAGACGCCATTACCGGCATTAGTTGTTGGTGGTAA
ACCAGTGTTCGATTTGTTGAATTCGTTTTGTTGATTATCGACCATGTTTT
GATTGTTGATGATGGTTGGTGTGAGTTCAGTCAACTGTTGGTTCGTATTA
GGTGTTTGAGGTAAAGGTTGAAGTGGTTGGAAATTGTTCGAGTCGTATTT
GCTGGTCGGTGAGTAGATATTATTGGAGTTTGATTCAACAGAGTTGTTGG
TTTTGTTTTCGTTCGAAATGTTGGATGAATTCGGTGAGTCAGGAGGTGAT
AACATGGGAACGAGGTTAGGGTCCATGTTAGCGTCTGGGTAGATGATTTC
GGGATATGTTTTCTGCTGGTAGGTTGGGATGTTGGGGTACCATGTGAACA
AGCCGTCTGGTGAAACAACGCAAGGCATGGAGTAGTATTGCGGAGCCATT
GGAGTGTTGACGGGGATAAAGTTTTGTTGCGGGTGCATCGGCTGATGTGA
GAATGGGACATGTCGGTTGCGGAATGATTTGCCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006284XLOC_006284Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011229-exon-sc0000122-1575043694:156975..158559TCONS_00011229-exon-sc0000122-1575043694:156975..158559Clytia hemisphaericaexon
TCONS_00011229-exon-sc0000122-1575043694:155523..156121TCONS_00011229-exon-sc0000122-1575043694:155523..156121Clytia hemisphaericaexon
TCONS_00011229-exon-sc0000122-1510915933:156975..158559TCONS_00011229-exon-sc0000122-1510915933:156975..158559Clytia hemisphaericaexon
TCONS_00011229-exon-sc0000122-1510915933:155523..156121TCONS_00011229-exon-sc0000122-1510915933:155523..156121Clytia hemisphaericaexon
TCONS_00011229-exon-sc0000122-1491911889:156975..158559TCONS_00011229-exon-sc0000122-1491911889:156975..158559Clytia hemisphaericaexon
TCONS_00011229-exon-sc0000122-1491911889:155523..156121TCONS_00011229-exon-sc0000122-1491911889:155523..156121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:155523..158559 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.144398	0	0	0	0	0	0	0.211711	0	0	0	2.81826e-10	0	0	0	0	0.0593597	0	4.37662	1.70196	0.0572205	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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