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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011228 ID=TCONS_00011228|Name=TCONS_00011228|organism=Clytia hemisphaerica|type=transcript|length=1662bp
aatttattttgaaagaaatttagtAGTAGGTTTTGGTCAACTTCCAAAAT
CGAAACAAATGATAAAACTCCTAAAATGAGCTTCTACacgcttatttttt
tataagaaccagtaaatttcgGTTGAgcctcagattgttcttaatttacT
ATTGTTCTGAGGCTGGtgttctcaaaaaaattgttcttataaacaaaaaa
gtgTGTACCCGAGAAATCGGGGTTGGGTAAAtaaaataatcctaaaaata
aATACCACAtcataaaaatgtgtattttttcaataaaaagacaGCACAGC
ACGTAAACTTATATACAAAAAATAACACACAAATTACAGCTCACTGCACA
AACATTAAGTTGATTGTACAGAGGAAcccaaaaaaattcaataaaaatgt
cTACATTCATTTGAGGGATAAAGACTCTCTAATATAGAGAAAATTTAAAG
TTCAAAGCATCAAAACACATCAAATCATATCAAATCTTAAAAGTTATCAA
ATAAAATCCAGATTCCAGTACCGTTTAAATCCAAATCAATATTCATTCAA
ATTAGTGAACGACAACGCGATTGACTTTACCAGGCGCAgtagacatgaaa
acaaaattttgtgttttcaaAGGCATCGAATCACCATTTTGTTGTTGGCT
GTTGACCACTTCTGTGGCGTGTTGGGGTGGCGGTGCCACTTTGGTGGGTG
GTGTAGGATATGCTGGAAGGCTGTTACCCAGCGATTTGACAGGTGGCGAT
GGAAAAGAGGGTGGGGCGGTGTTATCGTTTGTGGCGTTTGTGATTTCCGG
TTTCAGGTCTGTAGAGTTGGGAGCTGGAATGTGGATGCGTTGGAAACTTG
GTTGAACGACCAAATTCTTCATGTCTGAAGTAATGACGTTGATTTCCATT
GGGGGATTAGGGGTGGTGGGCGTTGAAGGTGGAGTTGGGGCGTTATCATA
AAGTGGTACGCCGTTGAAGAAAATTGGAGACGGTTTCAATTTGTTGTTGG
TGGAATTGAGCGGCGCTAATGGCTGAGGGTGAGGATAAGCGTTAACGAAG
TTGGTGTTTTGAGGTAAAAATGCATTTTGCGGATAAAGGTAGCCATTGTT
GAGGTGGACAATCTCGGTTGAAGATGGTAGAAGATTTTGAAAGACGCTAT
TACCGGCATTAGTTGTTGGTGGTAAACCagtgtttgatttgttgaattCG
TTTTGTTGATTATCGACCATGTTTTGATTGTTGATGATGGTTGGTGTGAG
TTCAGTCAACTGTTGGTTCGTATTCGGTGTTTGAGGTAAAGGTTGAAGTG
GTTGGAAATTGTTCGAGTCGTATTTGCTGGTCGGTGAGTAGATATTATTG
GAGTTTGATTCAACAGAGTTGTTGGTTTTGTTTTCGTTCGAAATGTTGGA
TGAATTCGGTGAGTCAGGAGGTGATAACATGGGAACGAGGTTAGGGTCCA
TGTTAGCGTCTGGGTAGATGATTTCGGGATATGTTTTCTGCTGGTAGGTT
GGGATGTTGGGGTACCATGTGAACAAGCCGTCTGGTGAAACAACGCAAGG
CATGGAGTAGTATTGCGGAGCCATTGGAGTGTTGACGGGGATAAAGTTTT
GTTGCGGGTGCATCGGCTGATGTGAGAATGGGACATGTCGGTTGCGGAAT
GATTTGCCTGAA Run BLAST on NCBI transcript from alignment at sc0000122:155523..158077- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011228 ID=TCONS_00011228|Name=TCONS_00011228|organism=Clytia hemisphaerica|type=transcript|length=2555bp|location=Sequence derived from alignment at sc0000122:155523..158077- (Clytia hemisphaerica)
AATTTATTTTGAAAGAAATTTAGTAGTAGGTTTTGGTCAACTTCCAAAAT
CGAAACAAATGATAAAACTCCTAAAATGAGCTTCTACACGCTTATTTTTT
TATAAGAACCAGTAAATTTCGGTTGAGCCTCAGATTGTTCTTAATTTACT
ATTGTTCTGAGGCTGGTGTTCTCAAAAAAATTGTTCTTATAAACAAAAAA
GTGTGTACCCGAGAAATCGGGGTTGGGTAAATAAAATAATCCTAAAAATA
AATACCACATCATAAAAATGTGTATTTTTTCAATAAAAAGACAGCACAGC
ACGTAAACTTATATACAAAAAATAACACACAAATTACAGCTCACTGCACA
AACATTAAGTTGATTGTACAGAGGAACCCAAAAAAATTCAATAAAAATGT
CTACATTCATTTGAGGGATAAAGACTCTCTAATATAGAGAAAATTTAAAG
TTCAAAGCATCAAAACACATCAAATCATATCAAATCTTAAAAGTTATCAA
ATAAAATCCAGATTCCAGTACCGTTTAAATCCAAATCAATATTCATTCAA
ATTAGTGAACGACAACGCGATTGACTTTACCAGGCGCAGTAGACATGAAA
ACAAAATTTTGTGTTTTCAAAGGCATCGAATCACCATTTTGTTGTTGGCT
GTTGACCACTTCTGTGGCGTGTTGGGGTGGCGGTGCCACTTTGGTGGGTG
GTGTAGGATATGCTGGAAGGCTGTTACCCAGCGATTTGACAGGTGGCGAT
GGAAAAGAGGGTGGGGCGGTGTTATCGTTTGTGGCGTTTGTGATTTCCGG
TTTCAGGTCTGTAGAGTTGGGAGCTGGAATGTGGATGCGTTGGAAACTTG
GTTGAACGACCAAATTCTTCATGTCTGAAGTAATGACGTTGATTTCCATT
GGGGGATTAGGGGTGGTGGGCGTTGAAGGTGGAGTTGGGGCGTTATCATA
AAGTGGTACGCCGTTGAAGAAAATTGGAGACGGTTTCAATTTGTTGTTGG
TGGAATTGAGCGGCGCTAATGGCTGAGGGTGAGGATAAGCGTTAACGAAG
TTGGTGTTTTGAGGTAAAAATGCATTTTGCGGATAAAGGTAGCCATTGTT
GAGGTGGACAATCTCGGTTGAAGATGGTAGAAGATTTTGAAAGACGCTAT
TACCGGCATTAGTTGTTGGTGGTAAACCAGTGTTTGATTTGTTGAATTCG
TTTTGTTGATTATCGACCATGTTTTGATTGTTGATGATGGTTGGTGTGAG
TTCAGTCAACTGTTGGTTCGTATTCGGTGTTTGAGGTAAAGGTTGAAGTG
GTTGGAAATTGTTCGAGTCGTATTTGCTGGTCGGTGAGTAGATATTATTA
NATCAAAACACATCAAATCATATCAAATCTTAAAAGTTATCAAATAAAAT
CCAGATTCCAGTACCGTTTAAATCCAAATCAATATTCATTCAAATTAGTG
AACGACAACGCGATTGACTTTACCAGGCGCAGTAGACATGAAAACAAAAT
TTTGTGTTTTCAAAGGCATCGAATCACCATTTTGTTGTTGGCTGTTGACC
ACTTCTGTGGCGTGTTGGGGTGGCGGTGCCACTTTGGTGGGTGGTGTAGG
ATATGCTGGAAGGCTGTTACCCAGCGATTTGACAGGTGGCGATGGAAAAG
AGGGTGGGGCGGTGTTATCGTTTGTGGCGTTTGTGATTTCCGGTTTCAGG
TCTGTAGAGTTGGGAGCTGGAATGTGGATGCGTTGGAAACTTGGTTGAAC
GACCAAATTCTTCATGTCTGAAGTAATGACGTTGATTTCCATTGGGGGAT
TAGGGGTGGTGGGCGTTGAAGGTGGAGTTGGGGCGTTATCATAAAGTGGT
ACGCCGTTGAAGAAAATTGGAGACGGTTTCAATTTGTTGTTGGTGGAATT
GAGCGGCGCTAATGGCTGAGGGTGAGGATAAGCGTTAACGAAGTTGGTGT
TTTGAGGTAAAAATGCATTTTGCGGATAAAGGTAGCCATTGTTGAGGTGG
ACAATCTCGGTTGAAGATGGTAGAAGATTTTGAAAGACGCCATTACCGGC
ATTAGTTGTTGGTGGTAAACCAGTGTTCGATTTGTTGAATTCGTTTTGTT
GATTATCGACCATGTTTTGATTGTTGATGATGGTTGGTGTGAGTTCAGTC
AACTGTTGGTTCGTATTAGGTGTTTGAGGTAAAGGTTGAAGTGGTTGGAA
ATTGTTCGAGTCGTATTTGCTGGTCGGTGAGTAGATATTATTGGAGTTTG
ATTCAACAGAGTTGTTGGTTTTGTTTTCGTTCGAAATGTTGGATGAATTC
GGTGAGTCAGGAGGTGATAACATGGGAACGAGGTTAGGGTCCATGTTAGC
GTCTGGGTAGATGATTTCGGGATATGTTTTCTGCTGGTAGGTTGGGATGT
TGGGGTACCATGTGAACAAGCCGTCTGGTGAAACAACGCAAGGCATGGAG
TAGTATTGCGGAGCCATTGGAGTGTTGACGGGGATAAAGTTTTGTTGCGG
GTGCATCGGCTGATGTGAGAATGGGACATGTCGGTTGCGGAATGATTTGC
CTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011228-exon-sc0000122-1575043694:156787..158077 | TCONS_00011228-exon-sc0000122-1575043694:156787..158077 | Clytia hemisphaerica | exon |
| TCONS_00011228-exon-sc0000122-1575043694:155523..155893 | TCONS_00011228-exon-sc0000122-1575043694:155523..155893 | Clytia hemisphaerica | exon |
| TCONS_00011228-exon-sc0000122-1510915933:156787..158077 | TCONS_00011228-exon-sc0000122-1510915933:156787..158077 | Clytia hemisphaerica | exon |
| TCONS_00011228-exon-sc0000122-1510915933:155523..155893 | TCONS_00011228-exon-sc0000122-1510915933:155523..155893 | Clytia hemisphaerica | exon |
| TCONS_00011228-exon-sc0000122-1491911889:156787..158077 | TCONS_00011228-exon-sc0000122-1491911889:156787..158077 | Clytia hemisphaerica | exon |
| TCONS_00011228-exon-sc0000122-1491911889:155523..155893 | TCONS_00011228-exon-sc0000122-1491911889:155523..155893 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000122 | supercontig | sc0000122:155523..158077 - |
Blast
The following BLAST results are available for this feature:
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