|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011225 ID=TCONS_00011225|Name=TCONS_00011225|organism=Clytia hemisphaerica|type=transcript|length=3591bpRun BLAST on NCBI transcript from alignment at sc0000122:56940..79025- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011225 ID=TCONS_00011225|Name=TCONS_00011225|organism=Clytia hemisphaerica|type=transcript|length=22086bp|location=Sequence derived from alignment at sc0000122:56940..79025- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011225 vs. Swiss-Prot (Human)
Match: TAF4 (Transcription initiation factor TFIID subunit 4 OS=Homo sapiens GN=TAF4 PE=1 SV=2) HSP 1 Score: 181.03 bits (458), Expect = 4.076e-46 Identity = 116/259 (44.79%), Postives = 164/259 (63.32%), Query Frame = 2
Query: 1553 DDDIIDVTCMAGVNLQEESQKILST-GDFMSYQTRSIKDKPILNIDILRRMILKKVHLHGIGEVTNDAMAVISHATEHHMRNILERLTACCMHRNDPHKGEVRYETISDVRNQLRVFEEIDEVERKHRESREREILMRVAKSRSRTEDPEQARLXXXXXXXXXXXXXLNRKRAANRTALEAIGGKKKKRKLD-EALESLQNASTPGGXXXXXXXXXXXXXXXQTIRTRQNRITMTDYNLVLETEKNTTKSLALYRSHLR 2323
DDDI DV MAGVNL EES +IL+T + + TRS KD+ L L+R IL+ HGI E+ D ++ +SHAT+ ++N++E+++ +N +K + RYE SDVR QL+ FE++D++E++ ++ +EREILMR AKSRSR EDPEQ RLK+KAK+MQQ+E R+R AN TAL AI G +KKRK+D S S PG + ++ T Q R R R+ + D LE E+ T+ SL LY++ L+
Sbjct: 831 DDDINDVASMAGVNLSEESARILATNSELVGTLTRSCKDETFLLQAPLQRRILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQKNFSYKDDDRYEQASDVRAQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAI-GPRKKRKVDCPGPGSGAEGSGPG---SVVPGSSGVGTPRQFTRQRITRVNLRDLIFCLENERETSHSLLLYKAFLK 1085 The following BLAST results are available for this feature:
BLAST of TCONS_00011225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.