|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011224 ID=TCONS_00011224|Name=TCONS_00011224|organism=Clytia hemisphaerica|type=transcript|length=1025bpRun BLAST on NCBI transcript from alignment at sc0000122:34512..54888- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011224 ID=TCONS_00011224|Name=TCONS_00011224|organism=Clytia hemisphaerica|type=transcript|length=20377bp|location=Sequence derived from alignment at sc0000122:34512..54888- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011224 vs. Swiss-Prot (Human)
Match: P4HTM (Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 2.438e-32 Identity = 83/263 (31.56%), Postives = 135/263 (51.33%), Query Frame = 1
Query: 244 LFQWDPIKVGHERRIEVAPGQTVSMVTAAVKPKAFLIDNFLTEAECDHVINKALTNGLHDSSLHIDPETRKSKQYTQGHSNSAIGDFRHWDRNQDGEATIQEVKRMAEKTIKLYFNETDIKEMFEILKINTLDDGIITRDEFTTMNTAGLSQYMNDLREENPRFRDRFSEQIWLRQGDSSDRVMQGLREKVRKLTNLPEYIVNGGEALQVLRYQPFGHYHAHFDSQDKEAHPDKPMCCH---MDPEASPDNCRLCRLVTILYF 1023
L + + IKVGHER++++ + + T ++KP F I FLT+ EC +I+ A GL S + E ++ Q S + FR D+N+DG ++EV + I+EM+ +K + DG+++ EF+ M+ +YM + E+ R S WL QG+ + +M+ +R++V +LT L IV E LQV+RY GHYHAH DS +P+ +C H + E+ P CR +T+L++
Sbjct: 111 LTRLEGIKVGHERKVQLVTDRDHFIRTLSLKPLLFEIPGFLTDEECRLIIHLAQMKGLQRSQILPTEEYEEAMSTMQ---VSQLDLFRLLDQNRDGHLQLREVLAQTRLGNGWWMTPESIQEMYAAIKADPDGDGVLSLQEFSNMDLRDFHKYMRSHKAESSELV-RNSHHTWLYQGEGAHHIMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVDS--GPVYPET-ICSHTKLVANESVPFETS-CRYMTVLFY 365 The following BLAST results are available for this feature:
BLAST of TCONS_00011224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.