TCONS_00011221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011221
Unique NameTCONS_00011221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1073

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011221 ID=TCONS_00011221|Name=TCONS_00011221|organism=Clytia hemisphaerica|type=transcript|length=1073bp
CTTGATAATATTTTCTAATACTTTTAGTTCCACAACATTCTCCCTAGCAT
GACTTATCTTGTACAAATCTTGTATCATTTTCATTGCGTGTTCAGCCAAT
GGCACATAGTTCATCACCACCCATTCGCCCGCCCGTCCTCGTGGGGCGTA
ACTTTCAGTTTCCTTGGGCGTTGACGCAACCTTGGGCGGACAGCAGGCGA
ATTCAACGAAAGAGAGTAGCATTGAGAATAAAGTAGGGTACATAGGTTGC
TGAGAATTATGGTCCAAGATATTACAACCTGACAGCATCGGTATAGGTTG
TTGTAGGGCTTTGATAGAGTTGAGAACGGACTGCTGCAAAGGCGAGAGAA
CAGTCTCGTGATGGAAGGTGGGTAACAAATATGGTGAAGTGTCGGAATGT
AATGGCATTGAAATGGACCTCGTTAGTATCTTACAAAACCTTTGTAAATC
ACCTATCCCGAAACGCGTGAAGATGCGCGAATACAAAGGTGGAAAGATAT
TTATGAGTGCCGTCAGATACGGTTGTGAAGGATAGATGGTCCGTGTTTCC
GTCTTGCCGTTAGCGTCTTTTGTAGTGCACAAAAAGTGTTCATTTTCCAT
GGAGTTTGTACCGATGTTTTGCCAGATTCGCCAAGCATTTGCCCAAAGGT
CCAACTCCGTATCTGTGATGTCTGCAACGAATGATATAGCGCTTGCGTCC
GAAGTTGAATCTTTGGATTTGGGTGCTTTATTATTCGCACTCAAGTCATC
CACGATTTCTTGAAAGCTTTTCAAAGAGTTTAATGCAACTTCAGAGTTTT
TACTTAAAGCGTTCGACTCGATGATTTCTAGTAAGAGCGCCCACGCTCTG
GGATATTCATCCAACTTCTTCAAGATGTGAGATCGGGTGGAGAACACCCT
TGCCACACCCGCAAGGGTGAGCACACAGGTTTCCGCCCATTGCTTCTCAG
CAGTATCTCTTGAGTGATGGATGAGAATATTGCCAGGGAGGACGGTGTTA
TCGGAGGGCGGTGGACAATTTGCCGCCACTGAAGAAGTAGACCGAACTTT
CTCTAACAGAGGGAATAAAACCT
Run BLAST on NCBI

transcript from alignment at sc0000122:557687..558820+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011221 ID=TCONS_00011221|Name=TCONS_00011221|organism=Clytia hemisphaerica|type=transcript|length=1134bp|location=Sequence derived from alignment at sc0000122:557687..558820+ (Clytia hemisphaerica)
CTTGATAATATTTTCTAATACTTTTAGTTCCACAACATTCTCCCTAGCAT
GACTTATCTTGTACAAATCTTGTATCATTTTCATTGCGTGTTCAGCCAAT
GGCACATAGTTCATCACCACCCATTCGCCCGCCCNTCATTTTCATTGCGT
GTTCAGCTAATGGCACATAGTTCATCACCACCCATTCGCCCGCCCGTCCT
CGTGGGGCGTAACTTTCAGTTTCCTTGGGCGTTGACGCAACCTTGGGCGG
ACAGCAGGCGAATTCAACGAAAGAGAGTAGCATTGAGAATAAAGTAGGGT
ACATAGGTTGCTGAGAATTATGGTCCAAGATATTACAACCTGACAGCATC
GGTATAGGTTGTTGTAGGGCTTTGATAGAGTTGAGAACGGACTGCTGCAA
AGGCGAGAGAACAGTCTCGTGATGGAAGGTGGGTAACAAATATGGTGAAG
TGTCGGAATGTAATGGCATTGAAATGGACCTCGTTAGTATCTTACAAAAC
CTTTGTAAATCACCTATCCCGAAACGCGTGAAGATGCGCGAATACAAAGG
TGGAAAGATATTTATGAGTGCCGTCAGATACGGTTGTGAAGGATAGATGG
TCCGTGTTTCCGTCTTGCCGTTAGCGTCTTTTGTAGTGCACAAAAAGTGT
TCATTTTCCATGGAGTTTGTACCGATGTTTTGCCAGATTCGCCAAGCATT
TGCCCAAAGGTCCAACTCCGTATCTGTGATGTCTGCAACGAATGATATAG
CGCTTGCGTCCGAAGTTGAATCTTTGGATTTGGGTGCTTTATTATTCGCA
CTCAAGTCATCCACGATTTCTTGAAAGCTTTTCAAAGAGTTTAATGCAAC
TTCAGAGTTTTTACTTAAAGCGTTCGACTCGATGATTTCTAGTAAGAGCG
CCCACGCTCTGGGATATTCATCCAACTTCTTCAAGATGTGAGATCGGGTG
GAGAACACCCTTGCCACACCCGCAAGGGTGAGCACACAGGTTTCCGCCCA
TTGCTTCTCAGCAGTATCTCTTGAGTGATGGATGAGAATATTGCCAGGGA
GGACGGTGTTATCGGAGGGCGGTGGACAATTTGCCGCCACTGAAGAAGTA
GACCGAACTTTCTCTAACAGAGGGAATAAAACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006281XLOC_006281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011221-exon-sc0000122-1491911889:557687..557791TCONS_00011221-exon-sc0000122-1491911889:557687..557791Clytia hemisphaericaexon
TCONS_00011221-exon-sc0000122-1510915933:557687..557791TCONS_00011221-exon-sc0000122-1510915933:557687..557791Clytia hemisphaericaexon
TCONS_00011221-exon-sc0000122-1575043694:557687..557791TCONS_00011221-exon-sc0000122-1575043694:557687..557791Clytia hemisphaericaexon
TCONS_00011221-exon-sc0000122-1491911889:557853..558820TCONS_00011221-exon-sc0000122-1491911889:557853..558820Clytia hemisphaericaexon
TCONS_00011221-exon-sc0000122-1510915933:557853..558820TCONS_00011221-exon-sc0000122-1510915933:557853..558820Clytia hemisphaericaexon
TCONS_00011221-exon-sc0000122-1575043694:557853..558820TCONS_00011221-exon-sc0000122-1575043694:557853..558820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:557687..558820 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.97103	2.1809	0.79984	1.16198	5.37739	2.05272	6.04568	5.8083	4.70433	4.72336	8.58415	7.75046	5.09836	12.0381	7.10385	8.52836	6.26219	7.75036	4.53481	5.90812	4.11841	7.34962	2.17918	6.62604	2.35288	1.09847	5.88629	1.13313	5.96793	4.62698
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032817Mon2_C
Blast
[Close]
BLAST of TCONS_00011221 vs. Swiss-Prot (Human)
Match: MON2 (Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 SV=3)

HSP 1 Score: 254.218 bits (648), Expect = 9.157e-75
Identity = 161/397 (40.55%), Postives = 225/397 (56.68%), Query Frame = -3 
Query:    1 VLFPLLEKVRSTSSVAANCPPPSDNTVLPGNILIHHSRDTAEKQWAETCVLTLAGVARVFSTRSHILKKLDEYPRAWALLLEIIESNALSKNSEVALNSLKSFQEIVDDLSANNKAPKSKDSTSDA----------SAIS--FVAD-----------------ITDT--ELDLWANAWRIWQNIGTNSMENEHFLCTTKDANGKTETRTIYPSQPYLTALINIFPPLYSRIFTRFGIGDLQRFCKILTRSISMPLHSDTSPYLLPTFHHETVLSPLQQSVLNSIKALQQPIPMLSGCNILDHNSQQPMYPTLFSMLLSFVEFACCPPKVA---------STPKETESYAPRGRAGEWVVMNYVPLAEHAMKMIQDLYKISHARENVVELKVLENIIK 1071
            VLF LL++VR +S+ A      S      GNILIHHSRDTAEKQWAET VLTLAGVAR+F+TR ++L+ L ++ RAW +LL+ I+S ALSKN+EV+L +LKSFQEI+  +S    + K +                S +S  FV                   +TD   +L+LW  AW  W  IG+ S +               +  T  PSQP+LTALI IFP LY  I T F + DLQ+   IL  +IS+P+ SD SP++LP++  E VL+ LQ++VL ++  LQ+ I        +   + Q MYP +F  LL+FVEF+C PP+           +   + + +AP     EWV +NYVP AE +++++ DLY+ +   + VV  KVL+NIIK
Sbjct: 1071 VLFHLLDRVRESSTTADKEKIESGG----GNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSDKPETPPVVNVPVPVLIGPISGMSRPFVRTDSIGEKLGRYSSSEPPIVTDELEDLNLWWAAWNTWYRIGSESTKPPITF----------DKLTFIPSQPFLTALIQIFPALYQHIKTGFNMDDLQKLGVILHSAISVPISSDASPFILPSY-TEAVLTSLQEAVLTALDVLQKAI-------CVGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAP----AEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIK 1441
The following BLAST results are available for this feature:
BLAST of TCONS_00011221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MON29.157e-7540.55Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 ... [more]
back to top