TCONS_00011220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011220
Unique NameTCONS_00011220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011220 ID=TCONS_00011220|Name=TCONS_00011220|organism=Clytia hemisphaerica|type=transcript|length=1731bp
GATAATCATGTTTATCTTCCATTCTACTATCGGTATAATGTCTTTGGAAC
ATCTTTTCTCAAAAGGTCGTTTGCAGGACAACGAAAATATGAAATCATCG
CTCATCTCGTTCGCATTCTTCTTTGCAATATCACTTCTTGTTAAAATATG
TTCCATGatttattgttgtttttcaCGATGGCGTACACTAAATTATGTGT
TAGTAGTAAATGGTTGCAGCGCCTTCATCTTAGAAATGCCCATGCTGGTT
TCACAAACGTGCGCTATGAAGGGGATGAAAAATATCGTATGGCAAGACCA
TTTGAAAGATATGATGGTGTCTTTCGCCTTCGTTGCCAATATTGTAATCA
TAACATGTGTGTGCTCTTCTGTTCTGTTATggttgaagaaaaaagaactc
gcaatcatttctattgttttgcCGGTACCGATTTGCTTCTTATTTATGAC
ACCTGTTTACATTGCACGCTTCGGATTGTTATTTCTACCAGACCACGCGA
CATTTTTGTTCGATGGCCAAAAGGTTAATGATTCATTTGCCGTGTTGCTG
ATGCAATTAACTGTGTACCTAGGCTTGATCGGCTTATGGATATGGGTCTT
CATTCTTGCGATAGCTGGCGTCATGTTGATAGCAGCAACCTGCAAATTTG
TTTACAAAACTCTTGCAAAAGACTTCAGACGCGGTTTCTTGATCATgatt
attcttattttgttgaatttcgcAAGCACCATTTCTGCTATTGTTGACGT
CAACCAGTATAGCTATTTGCGTGCCTTTGATTCCGCCGTCACTTTTTTCG
TTCTCTTGACGTTAGCAAGAATATCATATTGCATAAAGAGTTTCCAAATG
CAAGATCAGCCTATTATCATTATCAACCAAAAATACCCAGGCTTACTTTA
CTTTGTAATGACATTCATTTTGGAGATGCCCATGCTACTAAGTTATGTTG
TTATGATAAAACAAATCAAGGAAATCGATGCAGGATGGAAACCCAACGTA
CCGGAAAAGCTCCTCCATTATGAGTTTATCTGCAACTATCTTGTGCTCGT
ATTCTTGCAGTACATATTGGCTTGGGAAAAAGGAACATGTTCACTAGGGG
ATAAAGCATTACATATTCTTCTTCTGATGATATCATGTCCATTTTGCTAT
TACCCAGCATACGTCACAGAAAATGGATTTGATACAGTCAGCCAGCAGAA
TAATATCAATAATGCCCCGttcttgaccatttttggtTTAATAGGATTTT
ACGTTGCACAAACGGTAATTGTGGTGTCactgttttgtttattttttcgg
TATTGTGTCAAGAATGATGACCCTAGTCCGAATCACAGATTTCGACAATA
CCGCAGACCTCGACAATAAAACCACATACAATAGGTCTGCTTAATTTACT
ACCCGCTTTCTGGTTcggtttttcatttcaatgaattttaCAGAAGCTTT
GAAGAGTTTATTATTTGATTTACATCGAGGTGAAAACAATAACAATCGCT
GCCTCGTAAAATAGCAAAGCCTGGGGTAAGACCTAATAAGACCAGGGGGT
AACGTACTATATTTTTCTTTGAGCAGATATTCCTAGAGTTATAAATAATT
TCAACTAAACACTTTTGGCACATAGTTTGGAAGAAACTAAAGactaatca
aaattatttttgaaaaatttatttcaggGAGTCTGGAAACTAAACTTTGT
AAATCTTGAGCTTCAGAAGAAGTGAAACACA
Run BLAST on NCBI

transcript from alignment at sc0000122:499587..501317+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011220 ID=TCONS_00011220|Name=TCONS_00011220|organism=Clytia hemisphaerica|type=transcript|length=1731bp|location=Sequence derived from alignment at sc0000122:499587..501317+ (Clytia hemisphaerica)
GATAATCATGTTTATCTTCCATTCTACTATCGGTATAATGTCTTTGGAAC
ATCTTTTCTCAAAAGGTCGTTTGCAGGACAACGAAAATATGAAATCATCG
CTCATCTCGTTCGCATTCTTCTTTGCAATATCACTTCTTGTTAAAATATG
TTCCATGatttattgttgtttttcaCGATGGCGTACACTAAATTATGTGT
TAGTAGTAAATGGTTGCAGCGCCTTCATCTTAGAAATGCCCATGCTGGTT
TCACAAACGTGCGCTATGAAGGGGATGAAAAATATCGTATGGCAAGACCA
TTTGAAAGATATGATGGTGTCTTTCGCCTTCGTTGCCAATATTGTAATCA
TAACATGTGTGTGCTCTTCTGTTCTGTTATggttgaagaaaaaagaactc
gcaatcatttctattgttttgcCGGTACCGATTTGCTTCTTATTTATGAC
ACCTGTTTACATTGCACGCTTCGGATTGTTATTTCTACCAGACCACGCGA
CATTTTTGTTCGATGGCCAAAAGGTTAATGATTCATTTGCCGTGTTGCTG
ATGCAATTAACTGTGTACCTAGGCTTGATCGGCTTATGGATATGGGTCTT
CATTCTTGCGATAGCTGGCGTCATGTTGATAGCAGCAACCTGCAAATTTG
TTTACAAAACTCTTGCAAAAGACTTCAGACGCGGTTTCTTGATCATgatt
attcttattttgttgaatttcgcAAGCACCATTTCTGCTATTGTTGACGT
CAACCAGTATAGCTATTTGCGTGCCTTTGATTCCGCCGTCACTTTTTTCG
TTCTCTTGACGTTAGCAAGAATATCATATTGCATAAAGAGTTTCCAAATG
CAAGATCAGCCTATTATCATTATCAACCAAAAATACCCAGGCTTACTTTA
CTTTGTAATGACATTCATTTTGGAGATGCCCATGCTACTAAGTTATGTTG
TTATGATAAAACAAATCAAGGAAATCGATGCAGGATGGAAACCCAACGTA
CCGGAAAAGCTCCTCCATTATGAGTTTATCTGCAACTATCTTGTGCTCGT
ATTCTTGCAGTACATATTGGCTTGGGAAAAAGGAACATGTTCACTAGGGG
ATAAAGCATTACATATTCTTCTTCTGATGATATCATGTCCATTTTGCTAT
TACCCAGCATACGTCACAGAAAATGGATTTGATACAGTCAGCCAGCAGAA
TAATATCAATAATGCCCCGttcttgaccatttttggtTTAATAGGATTTT
ACGTTGCACAAACGGTAATTGTGGTGTCactgttttgtttattttttcgg
TATTGTGTCAAGAATGATGACCCTAGTCCGAATCACAGATTTCGACAATA
CCGCAGACCTCGACAATAAAACCACATACAATAGGTCTGCTTAATTTACT
ACCCGCTTTCTGGTTcggtttttcatttcaatgaattttaCAGAAGCTTT
GAAGAGTTTATTATTTGATTTACATCGAGGTGAAAACAATAACAATCGCT
GCCTCGTAAAATAGCAAAGCCTGGGGTAAGACCTAATAAGACCAGGGGGT
AACGTACTATATTTTTCTTTGAGCAGATATTCCTAGAGTTATAAATAATT
TCAACTAAACACTTTTGGCACATAGTTTGGAAGAAACTAAAGactaatca
aaattatttttgaaaaatttatttcaggGAGTCTGGAAACTAAACTTTGT
AAATCTTGAGCTTCAGAAGAAGTGAAACACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006280XLOC_006280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011220-exon-sc0000122-1491911889:499587..501317TCONS_00011220-exon-sc0000122-1491911889:499587..501317Clytia hemisphaericaexon
TCONS_00011220-exon-sc0000122-1510915933:499587..501317TCONS_00011220-exon-sc0000122-1510915933:499587..501317Clytia hemisphaericaexon
TCONS_00011220-exon-sc0000122-1575043694:499587..501317TCONS_00011220-exon-sc0000122-1575043694:499587..501317Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:499587..501317 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.084395	0.130454	0.343105	0	0.293475	0.171071	0.44292	0.5628	0.306981	0.635938	0.330093	0.4153	0.791614	1.18706	0.0511124	0.0652161	0.2921	0.411395	3.20302	3.08312	0.216142	0.428725	0.106907	0.0797327	0.160169	0.263893	0.105721	0.0413768	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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