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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011217 ID=TCONS_00011217|Name=TCONS_00011217|organism=Clytia hemisphaerica|type=transcript|length=2234bpRun BLAST on NCBI protein sequence of TCONS_00011217-protein >TCONS_00011217-protein ID=TCONS_00011217-protein|Name=TCONS_00011217-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp GFLPGMKQIGNVASLPGIVKNSIGLPDIHSGYGFAIGNMAAFDMSNPDSVRun BLAST on NCBI transcript from alignment at sc0000122:476410..487406+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011217 ID=TCONS_00011217|Name=TCONS_00011217|organism=Clytia hemisphaerica|type=transcript|length=10997bp|location=Sequence derived from alignment at sc0000122:476410..487406+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000122:476410..487406+ >TCONS_00011217 ID=TCONS_00011217|Name=TCONS_00011217|organism=Clytia hemisphaerica|type=CDS|length=21408bp|location=Sequence derived from alignment at sc0000122:476410..487406+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011217 vs. Swiss-Prot (Human)
Match: RTCB (tRNA-splicing ligase RtcB homolog OS=Homo sapiens GN=RTCB PE=1 SV=1) HSP 1 Score: 789.26 bits (2037), Expect = 0.000e+0 Identity = 377/445 (84.72%), Postives = 414/445 (93.03%), Query Frame = 3
Query: 3 GFLPGMKQIGNVASLPGIVKNSIGLPDIHSGYGFAIGNMAAFDMSNPDSVVSPGGVGFDINCGVRLIRTNLSVKDVEPVKEQLAQSLFDHIPVGVGSKGIIPMGAKDLDEALEMGMDWSLREGYIWAEDKEHCEEYGRMLQADPSKVSVKAKKRGLPQLGTLGAGNHYAEIQVVDEIFDNYAAKTMGLDRKGQVCIMIHCGSRGLGHQVATDALVAMERAMSRDNIEVNDRQLACARIGSTEGKNYLSXXXXXXXXXWVNRSSMTFLTRQAFAKVFNTTPDDLDMHMIYDVSHNVAKIEEHIVENKLKTLLVHRKGATRAFPPHHPLIPVDYQITGQPVLIGGSMGTCSYVLTGTEHGMKETFGTTCHGAGRALSRAKSRRNLDYLEVLDKLKEKGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAVGISKKAIKLRPIAVIKG 1337
GFLP MKQIGNVA+LPGIV SIGLPD+HSGYGFAIGNMAAFDM++P++VVSPGGVGFDINCGVRL+RTNL DV+PVKEQLAQ++FDHIPVGVGSKG+IPM AKDL+EALEMG+DWSLREGY WAEDKEHCEEYGRMLQADP+KVS +AKKRGLPQLGTLGAGNHYAEIQVVDEIF+ YAAK MG+D KGQVC+MIH GSRGLGHQVATDALVAME+AM RD I VNDRQLACARI S EG++YL MAAA NYAWVNRSSMTFLTRQAFAKVFNTTPDDLD+H+IYDVSHN+AK+E+H+V+ K +TLLVHRKG+TRAFPPHHPLI VDYQ+TGQPVLIGG+MGTCSYVLTGTE GM ETFGTTCHGAGRALSRAKSRRNLD+ +VLDKL + GIAIRVASPKLVMEEAPESYK+VTDVV+TCH GISKKAIKLRPIAVIKG
Sbjct: 61 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505 The following BLAST results are available for this feature:
BLAST of TCONS_00011217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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