TCONS_00011216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011216
Unique NameTCONS_00011216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1849

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011216 ID=TCONS_00011216|Name=TCONS_00011216|organism=Clytia hemisphaerica|type=transcript|length=1849bp
TCAAGGTATCGGAGGATTTTTACCAGGCATGAAACAAATTGGAAATGTTG
CTTCTCTCCCTGGTATTGTTAAGAATTCAATTGGGCTACCTGATATTCAC
TCTGGATATGGTTTTGCCATAGGCAACATGGCAGCGTTTGATATGAGTAA
TCCAGATTCCGTGGTCTCACCCGGAGGAGTTGGATTCGACATAAATTGTG
GCGTACGTTTGATCAGGACTAACCTTTCTGTCAAAGATGTTGAGCCGGTG
AAAGAGCAGCTCGCTCAGTCTTTATTCGATCACATTCCAGTGGGTGTCGG
CTCCAAAGGAATCATCCCTATGGGCGCCAAAGACTTAGACGAAGCGCTTG
AGATGGGGATGGATTGGTCGCTACGTGAAGGATACATTTGGGCAGAAGAC
AAAGAGCATTGTGAGGAATATGGCCGAATGTTGCAAGCAGACCCAAGTAA
AGTCAGCGTCAAAGCCAAAAAGAGAGGTCTTCCCCAGCTCGGAACATTGG
GAGCAGGTAATCACTACGCCGAAATTCAAGTAGTGGATGAAATTTTCGAT
AATTATGCAGCGAAAACGATGGGGCTAGATCGTAAAGGGCAAGTCTGTAT
TATGATTCATTGTGGAAGCCGTGGATTGGGTCATCAAGTCGCCACAGATG
CTCTGGTTGCCATGGAGAGGGCGATGTCACGTGATAACATTGAAGTCAAT
GATCGACAGCTGGCTTGCGCTCGTATCGGATCAACCGAAGGGAAGAATTA
CCTCAGTGCAATGGCAGCGGCCGCTAACTACGCATGGGTCAACCGCTCGA
GTATGACCTTCTTGACGCGACAGgcctttgCGAAAGTGTTCAACACGACA
CCAGATGATTTGGACATGCATATGATTTATGACGTCTCACACAACGTGGC
CAAGATCGAAGAACATATTGTAGAGAATAAACTAAAAACATTGCTAGTAC
ATCGCAAAGGAGCCACCCGTGCTTTTCCGCCCCACCACCCTCTCATCCCT
GTTGATTATCAGatcACAGGGCAGCCAGTGTTGATCGGAGGGAGCATGGG
AACTTGCAGTTACGTGTTGACGGGCACCGAACATGGGATGAAAGAAACTT
TTGGAACGACCTGTCATGGTGCTGGCCGTGCACTATCCAGAGCAAAATCA
AGgcGTAATTTGGATTACTTAGAAGTATTAGACAAGTTGAAAGAGAAGGG
AATCGCAATTCGAGTTGCTTCACCTAAACTCGTCATGGAGGAGGCACCCG
AATCCTACAAAGATGTAACAGATGTCGTTGATACTTGTCACGCAGTTGGG
ATCAGTAAGAAAGCGATCAAGCTGAGACCGATCGCTGTCATCAAAGGATG
AGATCAATTTCTACGAAGATAGAATGATTTCAAGCTCTTGAGGTATCTCA
TGTTTGGACCCAGGCTCCAAAACAAAGAAGAAGACAATTTGCGTTGCTGA
TGAAGAAATTATCTCGCAGGTATCTAAAGTTTGTGTTATGTAAGTACGAA
AGACGATCAAAACATGTATCATGATATCATATGGGACATCTTGATAATGC
TGGATTGATTCTAAGGGCTTGATGCTcactttggtgaaaatttgattggt
taaaaaaccACGATAAAAGCAAAGTTAGAAGAATCCTTATGCTATAAATG
ATAATTATTCAATTTATATATACTGAAGGGAATTTTTGATATTGATAATA
TATTTATAAGATATAAGTTTCTAATGTGAAAGATGGATGAAAAGAGAGAC
TTTTCAATAATGTGACAAGAAATTGAATTATGAACCTTTCCCTTGATATT
TTCTGCCGAAGATGGTCATTAAAGCAAGTGTGTCAATTTCACATTTAAA
Run BLAST on NCBI

transcript from alignment at sc0000122:476399..486304+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011216 ID=TCONS_00011216|Name=TCONS_00011216|organism=Clytia hemisphaerica|type=transcript|length=9906bp|location=Sequence derived from alignment at sc0000122:476399..486304+ (Clytia hemisphaerica)
TCAAGGTATCGGAGGATTTTTACCAGGCATGAAACAAATTGGAAATGTTG
CTTCTCTCCCTGGTATTGTTAAGGTATTATTTACAtcataacttttcaaa
attaGCATCTTTTTTGGTCAGTGCTTCTAAAAAGCTGTTTCAAATAATGT
AATATAGTTGAGCTTCCATAACTGGAACATGCACGGGGAAagtaaatttg
ttcgagttaaggaaacttCGAGTTAAAGAGTAAGGTTTATGtgcagaaaa
cttgttcgagttaaggagacattctaAGTATAGTTAAGTTGAAGTTAAAT
AGCCTCTACTGGTATAACTTTGTGATCGTTGTTAAGGTATTTTAAGTGGA
CTATTTACTTCTTTTCCTGTTTATAGAATTCAATTGGGCTACCTGATATT
CACTCTGGATATGGTTTTGCCATAGGTAAGTATTTTCTCATGtcttccac
tttgtttcattggattttttgagTTGGGATAGGTTAAATGGtatccaggc
tatattctcagccttatggGAACATTtctgagcttttagatcctgagatt
cTAAGGTAAGGAGGATCTCAATAAGTCTTAAGTCTATCGTTAAAACTCTT
CTTTccaaccgtactttaaagcaccttaaaaatcacttgcggttttcaaa
tttgagggaattcccATTTAGTGTCAAATATTATGATGGGGATTAAAGTA
AGGGGCTAaaccttatttttttattgtagtATTCTTTTTTACTCTGAATA
TATGCTCCATCCGATGGTATCAGTCATCATTTccattgaaattaattttt
gaaaatagtctGTTTTCTGATGATTAGCNGTTTCCATTGAAactaacttt
tgaaaattgtcTGTTTTCTGATGGTTAGCCATAAAGACTTTTTATggctt
ttatttttttgataagtAAAACTGACCACTTCCCTTTGTCTTTCAGGCAA
CATGGCAGCGTTTGATATGAGTAATCCAGATTCCGTGGTCTCACCCGGAG
GAGTTGGATTCGACATAAATTGTGGCGTACGTTTGATCAGGACTAACCTT
TCTGTCAAAGATGTTGAGCCGGTGAAAGAGCAGCTCGCTCAGGTAAAATG
ATATTCATTTTGTTAAGTTATTGAAGATGCAGCACTTGTgacagtttttt
ttgttttcgtcGGATCTGATGCTAGCTAGCTTCACCATCttaaaactaaa
ctaaaatgatgAACTTCTGTGTTGTAGTTACCTTTGGTATGAAGAAGtct
ttgtttttacatttttctagcCTCATTAAGAAAGACAATCAATCAATACC
CGACACTGATAATAAACCATTTTTCTCTCTTCTCTTCCAGTCTTTATTCG
ATCACATTCCAGTGGGTGTCGGCTCCAAAGGAATCATCCCTATGGGCGCC
AAGTAAGAAATTCATTTctgttcaaatttttctgattGAACAGTTGATCA
ACAAGCAAAGTATTTTCGGCCCATTTAATCCCTAACTGCCTAGTTTTGAG
TTTTTTCGACTCATGGGAAACGTTTTTCGTTCCCGTACAAAACCAAAACG
TCTACATTCTTCCTCGATATGATCGTTAAGCTTTGCAAGCTCTTCACTCT
GCCAGCCCTAAATTCATTCACTACTGTAAGCATTATATAATTAAATGCTG
AATGAGATGGCTATAGAGATGGTTACTATAACAATAGTTATATCATGTTA
GATCATAAATCCACCATGACAGTTTTCCTCAGAGAAGCTAAAATAATCAA
CAATGTTTAAAGCTCCTTTCTTATTCTTCGTAGAGACTTAGACGAAGCGC
TTGAGATGGGGATGGATTGGTCGCTACGTGAAGGTATATATCGTCTTTTC
TTCATTTCTCTTATTGCTGCTTATGCTTACGTACGTGATCTAGAAGTATC
AAGCCAATCAATAATTAAGTCCATTGAGACTTTTTTTTCCAATAAACCAA
ATTAATGTTCAGAGATATTTGGTCTTTCACACTCCTTTAAACAGAATAGC
TTGTATTTTAAGGTGTAGAGTACGTTATATTCGAAAATTTCCTTAAATAT
CTAGTTTATATCGCCACAGTACACTCACTCTTTTTACCGAAGAGTCCTAC
CTCCTCATATTTATAGTtagacgtttttttataagagcaaattttgaagc
ctcttaatgttaagcctaaaaatgttcttaaattgttcttgttTTCACCT
TTCTACGAGTATTTTTGTATGTAAtcttcttaagaaattgggtctTTTAG
TGTCCACGAAGCCTGAACatgttcttaacctgttcttgatattttggcta
tcgaagcctgtTCCTATATAGTTGTATAGTGTATTCTTATTCTTTCCTTC
CACTTCTAGGATACATTTGGGCAGAAGACAAAGAGCATTGTGAGGAATAT
GGCCGAATGTTGCAAGCAGACCCAAGTAAAGTCAGCGTCAAAGCCAAAAA
GAGAGGTCTTCCCCAGGTAACCATTGTTTTCTGACTTTGTTAACAGTGTA
TTgtctttgaaatttaaattgTTTGACTTTTAAGACTCTCGATGGCTTAA
TCTGTTGCTTCTTTATACTATCTGAGGGGGCTAAGGATGTCTAAATAGAA
GAATTTGTGACGAAGTCCTTCTAGAAAATCTAATCAGTCCTGGTCAAAGT
TTGCTGGCTGACCTTGTTAGTAGTGCACTTCTTTAGAAGTTAGGCTTTTG
GTGAATGTGTTCCATACGAGATTGCCATCGTCCGGAATTATTGCGCTTAT
CCTGGCACAGTAAAGCCTTACTCGTTTAAGCAGGGAGAACGAATGCTCTT
GTTAAAGAGTTATATTAACAGAGTAACAGAGTTGTGGGACGATATGGAGT
TTTTAAAAGCTCTTGTTTAATTTGGTTGGTTAACCAGTaatgaaacaatt
ttgttaaacatacgcaacaaccttctactcagaatcatatTCGAACTCGG
TACTTTTTTTCGCGACACCCTGTGCAAggtcttatttgatttggttggtc
gttaaccagctgcagtaatgaaacaattttgttaacttttctaaagaacg
cgtcatttttactagttcaaatgaccaattattaaagtatctcaTAAAAA
CGGGTATACCCTTATCAAGGTACATTCACTTCTGCACGGAAGTCAAGAGA
GACTGCATTTAATAACCTTTTGAAAGCCTGAAAATCTTGCAGTGAGTTTA
CTAAGACattcgttttcttttttgtagCTCGGAACATTGGGAGCAGGTAA
TCACTACGCCGAAATTCAAGTAGTGGATGAAATTTTCGATAATTATGCAG
CGAAAACGATGGGGCTAGATCGTAAAGGGCAAGTCTGTATTATGATTCAT
TGTGGAAGCCGTGGATTGGGTCATCAAGTCGCCACAGGTAACAAAgcctt
caaagtttttttaactttttgaaacttttctttcATTGCGTTTAATGTAA
taattttaaagtctttaaTTGCAGTTTACTACGCGCTTTTGCAATGGCAA
CAGTAATGTAAATTACTAGAAAACTATTCAACTTTTACTTCTTTCTACTC
GATCTTCTACCTTGTTATTTCAGATGCTCTGGTTGCCATGGAGAGGGCGA
TGTCACGTGATAACATTGAAGTCAATGATCGACAGGTACAATGGATTCTG
GGAAGGGATTTTAAGCGTGCAGAGAATCAGAGGACACTAACCCTTCTGCG
TAAAAATAGAGCAATACAACTCTTTAAATCTGTGGGAAATGCTAACAATA
TAATCTCAAAATCGATGAATGATTTTAACTCTTATAGTTAAATGGgagtt
aaataaaaacaattgccAACGTTACATCTTTACTTGAAATTACTTTTAAg
taacctcaaatcaaaacttATCTTCTTTTCGATCTTGTTTTAGCTGGCTT
GCGCTCGTATCGGATCAACCGAAGGGAAGAATTACCTCAGTGCAATGGCA
GCGGCCGCTAACTACGCATGGGTCAACCGCTCGAGTATGACCTTCTTGAC
GCGACAGGTAAGCAAGGGTTTGTGCACAGGTAACATAGAAGGTAGATGTT
TAAATGCAGAGATGCCTTATTCTCCTGATGTTTGCGTCGTGTAGGTTTTC
ATGTACCTCTGTTATAAGATTAGGCTCGACTAGACAAGAGTTGAAGctcg
aaaacataaaaattcACACTATAATCCCTGTAGTTGAGAGTCTTGGATAT
AGGAACGGGTTAAAATTCAAAGTGAAAATCGCGTAGTTTTTTGCGTAAAG
AAAAATATACTTCCtgtaagaaacttttttccctagaggatgagcagaag
cctagtgTTGGTCATTCGTCTAATCATATTCTTTCCTTagtttgttttaa
atattcttttattgctttctatacacgttttttttaagaaacacgaggct
cggaatgcctaaaaactaaaaaacattaaagaaacatactgaggctgaga
atgagaaaataacattttttcagtttttttaagaaccttccaataaaaac
aaatgttttttctttttgcatgaaaaataggctgattatgtcaaaaagtt
tagaaacatgtaaacatttaaggctcaaaaggccgatttcttaagaaaca
ttgaggctgcttggtaaaactagtttcttaaaaaaaaacttgtagatGCA
CTTTGTACTTTTACTCAAGAAGTAAATCTGAGACTCGGAtcgttcttaat
ttgttctaagCGTTTGGCTAAACTTCAGCGGCATGTTGTTATGATTGATT
CCCGCTAGTTTGATCttcaaaaggtcaaaattttcttttgaattagAGAA
GTTTCAAGTCGGAGAGATTTTGCTTACTGAAAATGTCATGCCGAAAGCCC
ATTCCCCTTGTTTTTCTTATCATAtagaaaccactctcaagggaatTGTT
ATGACCACGCTGACATGGTTTCCATACTGTAGTAAAAAAGGAGCAAGTTA
TAAAAATTAATGAACTTTAATCCCCTCCAAGAATTTCTTTTGTGTTAGAA
AAAGATGTAAGAAAGGTTCAATTAGGAGAGATTTTAAATGGAAGTGAAAA
GGTTAATGACTACGAAAGTTTATCGCTCTATTAAATGTGCATTCTGTTTT
ACTAttatgtggaaaccactctccAAGAGATCACTGTAATTACGCTGACA
TAGCTAATCCCTCTCattttcctttccaggcctttgCGAAAGTGTTCAAC
ACGACACCAGATGATTTGGACATGCATATGATTTATGACGTCTCACACAA
CGTGGCCAAGATCGAAGAACATGTATCTTTTCCCCCTTCAAATGTCACTC
CTTTGACCTCTGCGTCAGATGGAATGAAACACACCCCATAGTCTTCTAAT
ATCAGGGTCATGCTTCACTAGCTTTCCAATACTTTAACTCGCAAATCAGT
GAGGATTTATTCTTTTTCACACCTTTCCTTCTACTTTATATTGTGTTCTA
TCTACTCTAAAGGTCTAGTTTAGATGAACCCTAGTTCGCCTATTATAGCA
ATAGAATCAGCAAGGGAAGAAAGATGGCCACCCTGTTAACTCTAAACAAT
CAGGTTTTAAGCCTGAATCAGCAACAATGGTGATTCAGTTCTAGGTTTAC
CATCAGCATCTTTCAAATTCACTTTCCCTTAACTCATTCGACTCAACCAG
ATTGTAGAGAATAANCATCTTTCAAATTCGCTTTCCCTTAACTCATTCGA
CTCAACCAGATTGTAGAGAATAAACTAAAAACATTGCTAGTACATCGCAA
AGGAGCCACCCGTGCTTTTCCGCCCCACCACCCTCTCATCCCTGTTGATT
ATCAGGTAAGGACCATCACCCGTGTTTTTTTTTCGCCTCATCACCCTGTG
GAATATCACCGACCCTTCctttttattaaactttgaaacGTCAAATTTGA
NCCATCACCCTCCCATCCCTGTGGAATATCACCGCCCATTCCTTTTTATT
TAACTCTAAAACGTCAAATTTGATGTTCCTTTTCAGagtgtttggaaaaa
aattttaacagtATACTCAAAAGTGATAGAAATGTTCTGGTTCGAATCGT
TTAAGTGGCTTTTAAAATAAACAAGAGAAGAAGTGGTTAAGGTTCTGGTT
TCTTAGTCAGAGTCGGTCAGAGTCCCACATAAAGTAAGATTTCAATAACG
TCTTTTTTAGTCTAATTCTGgttgaactttgctttttggtgatttttatg
GTACTGAATCCAGTGAACTAGACTATAGGATATCGTcatctaaattttgt
ttaacttttgttttcggAAATTAAATGAATGCTACAAAATAATAAAACCT
TGTTGCAATTTTTGACtataatataataaaagccCCAAAAATACCTAcca
attttgaaagattttctgttagtttttttccaaaaggtACTGGAGCTAAT
GTTTTTGTGTGctcaagaaaatgccaaataaagTCCTGTCATATTACACT
TGGCTACTAAGTAGTAAGTTCAGCGCCAACTGGTCTATCAAAAAGCCGTA
AATGGCTCCCGGGCTAGATCAGATGCGGATCCAGGACTTCTATTGAAATG
AGACCTTTGAaactaaacttttttttttttgcagatcACAGGGCAGCCAG
TGTTGATCGGAGGGAGCATGGGAACTTGCAGTTACGTGTTGACGGGCACC
GAACATGGGATGAAAGAAACTTTTGGAACGACCTGTCATGGTGCTGTAAG
TTTGCTCATTAGCTCTAAGATTTTCTTCGTTGAGAGACGTTTTCACTTAC
CTATGTACACTTTTCATATANGTTAGTTCTAAGATTTTCTTCGTTGAGAG
ACGTTTTCACTTACCTATGTACACCTTTCATATATCGGTAGTCTGTAGGc
aaacccaatatctacggctaCTTTCAAAACTCGTTGCTATAGAGATACTA
CGAAACGATGagcgtgagatacactctggtacagcgTAATATATCGGATT
ATTACGACaaactttttatcttttctttgatACTTTCTCTTTGTTGTACA
ATAAGATGATTTTTGTTTTCGATTTGTTTAGGGCCGTGCACTATCCAGAG
CAAAATCAAGGTAAGTAATTCATCTGCTGCTTTGACAGCTCTGTATTTCT
AAAATATTGATTGACAGTTTAATTAAAACTTACGGCTTATAAAAGTGTGA
AGGCATCTCAATGTATTgaacagttgacgctctctgatTCGATTTTTGAG
GGAATTAGGATTATCATCaaataaaggagaaaaacaGAGCTTCGTTAATG
AGAGTCACTTGTTGACGacgactttcaatattatcaaataatggagcgta
acaaatagtagagcgtcgaattagagagtgttgAATTGTATTTTATTGTC
TATTTTTGTTGGAAAGTATCATTCTGTTCGTCCGCGAAAATCTATTCAAA
TAATCGAACATctgactttcactttcactttcactttcaggcGTAATTTG
GATTACTTAGAAGTATTAGACAAGTTGAAAGAGAAGGGAATCGCAATTCG
AGTTGCTTCACCTAAACTCGTCATGGAGGAGGTAACTCATTctccaaatt
ttctttttcaacccTCCAACTATTTCGTCTAAACTTAACGAGAGAAAAAG
GGGcgttcgggtcgccctcgactgcggccGTCCCTACTTGCTTAACAGTC
GCATAGTAGTTTTCTAGCGTTGCTTTCAAGTTATCAAGAAAACTGGACGG
ATTTTCCAGAAATTCCATATAATCACTTTCTccattttcttgttttaaaa
tttgacaACCTTGAAAACTCGAAATTAAAAAACTTATGTctcgaaaatga
agatgatgACTTTTTAAGTCTCAAAGTTttcaattaaagtctgtctcaaa
ataatctaCAGCGAGGAcaaaaaaagctctattcatgTTTGTCTTGTTAA
GAGATGGTCATAGGTTTACTTTTGGTTACTTTTGGTTGTCTTCGAGCATA
TAGCTCTGTCCAGAATCTTTTGATCCACACCACAATCTCTATTAAATCCA
CTTGAAGGAAAAATGGATCAACAGAGAGATTTCATGTCTGAAATTGAGTT
TGAAGCATTGTCTTTATTTGAATGCAGTTTGTCAAAGACGGAACGTTCTG
CTTTTTAAAGGCTGGATATTCATTCTTCGACCAACAGTATTCAAAAGTTA
CACAAGTTAGTTGCTGAAAAATATGTCTTCATTTTGTAGATCGGGGAGAG
GTTGGGAAAAGTCGAAAATAATTCTAATTCTCAAAAGTGTCACATTCAAT
ACTTTGAtcggataaattttcgcgggaattaaatttttaagatttcgcaG
GGACTTcttttcgcggatggcactattgggagacaatattttcacgattt
tgtgcctTTTACTCTAAAATCATACATGTTGGTTGCTGAAATACGCACTA
TCAGAGCTTCTTTGATGGCGcagtaaacattttaaaagaagttaaaatct
gtctcaaaagtatgttgATACTTTAGTTGTTTTACATTTTCTCAGCACCC
ATTCATGCTATGCTAgaaagttatacaccgttggaaagatatttcaaagg
ataagagatttttgaaaacttgaaaatgaagaaaagaaagGAAGGTTTGA
CATTTGAGTTTTGTTTTAAAGTATTTCGCGGATAAGGCCTCTCCAAATTT
CCATTTGGGACtttatttcgcggatgacacccaaatccgctaaatccgcg
aaattttatcccattagaGTATCAGCTTTAGAGTCATAAATACTCTGAAA
AAACTAACCTTCGAATGAATCTCACTTTTCCATTTAGGCACCCGAATCCT
ACAAAGATGTAACAGATGTCGTTGATACTTGTAAGAAATGTTTTCACCTC
TCTTTCGTGTATGTCATATGTTTGTTATGTTCAAATGGTGCTCAAAAATT
GACCAGCAATCAATTTCACTTAAGtgctcattttttgaaaataatgatgg
AAGCACTGGTTAGGGCGTTCATTTGCACCCTGGTCGGAtaattgacaaaa
acaaaacctcGTTGACTTATTTGGGCCTCTGTACCCTAACTGTATAAAGA
TCCTAGCGGTTTTTAGTGTATCGACATAAACTAGACTTACCAGAAATCTG
GATACCATATTTAAAAAAGGGCTTCacattttttatcagaaaaattcTAT
AAGAACGACGAGGCTCAAAAACGCCCGAAGAGTTTAAGGGTCAAATAGTA
AGATACTTTTGCCCAATAAGTAAGAACGTGAAGAGAACCTTTTGAGGCTC
AAACCAAAAGACAAGAATAGCCTTGCCACAAAATATTTTCActgagtctt
aaaaaaaacagaaatgcTTCAAAAATGCTGTCTGTCATTTCAGGTCACGC
AGTTGGGATCAGTAAGAAAGCGATCAAGCTGAGACCGATCGCTGTCATCA
AAGGATGAGATCAATTTCTACGAAGATAGAATGATTTCAAGCTCTTGAGG
TATCTCATGTTTGGACCCAGGCTCCAAAACAAAGAAGAAGACAATTTGCG
TTGCTGATGAAGAAATTATCTCGCAGGTATCTAAAGTTTGTGTTATGTAA
GTACGAAAGACGATCAAAACATGTATCATGATATCATATGGGACATCTTG
ATAATGCTGGATTGATTCTAAGGGCTTGATGCTcactttggtgaaaattt
gattggttaaaaaaccACGATAAAAGCAAAGTTAGAAGAATCCTTATGCT
ATAAATGATAATTATTCAATTTATATATACTGAAGGGAATTTTTGATATT
GATAATATATTTATAAGATATAAGTTTCTAATGTGAAAGATGGATGAAAA
GAGAGACTTTTCAATAATGTGACAAGAAATTGAATTATGAACCTTTCCCT
TGATATTTTCTGCCGAAGATGGTCATTAAAGCAAGTGTGTCAATTTCACA
TTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006279XLOC_006279Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011216-exon-sc0000122-1491911889:476399..476471TCONS_00011216-exon-sc0000122-1491911889:476399..476471Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:476399..476471TCONS_00011216-exon-sc0000122-1510915933:476399..476471Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:476399..476471TCONS_00011216-exon-sc0000122-1575043694:476399..476471Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:476775..476823TCONS_00011216-exon-sc0000122-1491911889:476775..476823Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:476775..476823TCONS_00011216-exon-sc0000122-1510915933:476775..476823Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:476775..476823TCONS_00011216-exon-sc0000122-1575043694:476775..476823Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:477345..477490TCONS_00011216-exon-sc0000122-1491911889:477345..477490Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:477345..477490TCONS_00011216-exon-sc0000122-1510915933:477345..477490Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:477345..477490TCONS_00011216-exon-sc0000122-1575043694:477345..477490Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:477739..477800TCONS_00011216-exon-sc0000122-1491911889:477739..477800Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:477739..477800TCONS_00011216-exon-sc0000122-1510915933:477739..477800Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:477739..477800TCONS_00011216-exon-sc0000122-1575043694:477739..477800Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:478182..478231TCONS_00011216-exon-sc0000122-1491911889:478182..478231Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:478182..478231TCONS_00011216-exon-sc0000122-1510915933:478182..478231Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:478182..478231TCONS_00011216-exon-sc0000122-1575043694:478182..478231Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:478758..478864TCONS_00011216-exon-sc0000122-1491911889:478758..478864Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:478758..478864TCONS_00011216-exon-sc0000122-1510915933:478758..478864Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:478758..478864TCONS_00011216-exon-sc0000122-1575043694:478758..478864Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:479626..479785TCONS_00011216-exon-sc0000122-1491911889:479626..479785Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:479626..479785TCONS_00011216-exon-sc0000122-1510915933:479626..479785Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:479626..479785TCONS_00011216-exon-sc0000122-1575043694:479626..479785Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:479972..480033TCONS_00011216-exon-sc0000122-1491911889:479972..480033Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:479972..480033TCONS_00011216-exon-sc0000122-1510915933:479972..480033Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:479972..480033TCONS_00011216-exon-sc0000122-1575043694:479972..480033Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:480292..480405TCONS_00011216-exon-sc0000122-1491911889:480292..480405Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:480292..480405TCONS_00011216-exon-sc0000122-1510915933:480292..480405Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:480292..480405TCONS_00011216-exon-sc0000122-1575043694:480292..480405Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:481578..481670TCONS_00011216-exon-sc0000122-1491911889:481578..481670Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:481578..481670TCONS_00011216-exon-sc0000122-1510915933:481578..481670Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:481578..481670TCONS_00011216-exon-sc0000122-1575043694:481578..481670Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:482108..482203TCONS_00011216-exon-sc0000122-1491911889:482108..482203Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:482108..482203TCONS_00011216-exon-sc0000122-1510915933:482108..482203Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:482108..482203TCONS_00011216-exon-sc0000122-1575043694:482108..482203Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:482983..483093TCONS_00011216-exon-sc0000122-1491911889:482983..483093Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:482983..483093TCONS_00011216-exon-sc0000122-1510915933:482983..483093Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:482983..483093TCONS_00011216-exon-sc0000122-1575043694:482983..483093Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:483430..483458TCONS_00011216-exon-sc0000122-1491911889:483430..483458Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:483430..483458TCONS_00011216-exon-sc0000122-1510915933:483430..483458Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:483430..483458TCONS_00011216-exon-sc0000122-1575043694:483430..483458Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:483839..483929TCONS_00011216-exon-sc0000122-1491911889:483839..483929Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:483839..483929TCONS_00011216-exon-sc0000122-1510915933:483839..483929Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:483839..483929TCONS_00011216-exon-sc0000122-1575043694:483839..483929Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:485186..485228TCONS_00011216-exon-sc0000122-1491911889:485186..485228Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:485186..485228TCONS_00011216-exon-sc0000122-1510915933:485186..485228Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:485186..485228TCONS_00011216-exon-sc0000122-1575043694:485186..485228Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1491911889:485742..486304TCONS_00011216-exon-sc0000122-1491911889:485742..486304Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1510915933:485742..486304TCONS_00011216-exon-sc0000122-1510915933:485742..486304Clytia hemisphaericaexon
TCONS_00011216-exon-sc0000122-1575043694:485742..486304TCONS_00011216-exon-sc0000122-1575043694:485742..486304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:476399..486304 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
47.182	48.2397	18.371	14.4824	16.979	14.8109	26.6544	29.2168	23.9334	28.4152	21.7586	18.7125	19.097	21.7743	20.2749	25.6205	29.3086	30.5147	11.1786	11.6292	23.9908	23.8381	43.329	40.0209	26.6872	29.5287	21.0291	17.3498	30.7113	32.4193
Blast
[Close]
BLAST of TCONS_00011216 vs. Swiss-Prot (Human)
Match: RTCB (tRNA-splicing ligase RtcB homolog OS=Homo sapiens GN=RTCB PE=1 SV=1)

HSP 1 Score: 794.267 bits (2050), Expect = 0.000e+0
Identity = 379/448 (84.60%), Postives = 417/448 (93.08%), Query Frame = 2 
Query:    5 GIGGFLPGMKQIGNVASLPGIVKNSIGLPDIHSGYGFAIGNMAAFDMSNPDSVVSPGGVGFDINCGVRLIRTNLSVKDVEPVKEQLAQSLFDHIPVGVGSKGIIPMGAKDLDEALEMGMDWSLREGYIWAEDKEHCEEYGRMLQADPSKVSVKAKKRGLPQLGTLGAGNHYAEIQVVDEIFDNYAAKTMGLDRKGQVCIMIHCGSRGLGHQVATDALVAMERAMSRDNIEVNDRQLACARIGSTEGKNYLSXXXXXXXXXWVNRSSMTFLTRQAFAKVFNTTPDDLDMHMIYDVSHNVAKIEEHIVENKLKTLLVHRKGATRAFPPHHPLIPVDYQITGQPVLIGGSMGTCSYVLTGTEHGMKETFGTTCHGAGRALSRAKSRRNLDYLEVLDKLKEKGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAVGISKKAIKLRPIAVIKG 1348
            G+GGFLP MKQIGNVA+LPGIV  SIGLPD+HSGYGFAIGNMAAFDM++P++VVSPGGVGFDINCGVRL+RTNL   DV+PVKEQLAQ++FDHIPVGVGSKG+IPM AKDL+EALEMG+DWSLREGY WAEDKEHCEEYGRMLQADP+KVS +AKKRGLPQLGTLGAGNHYAEIQVVDEIF+ YAAK MG+D KGQVC+MIH GSRGLGHQVATDALVAME+AM RD I VNDRQLACARI S EG++YL  MAAA NYAWVNRSSMTFLTRQAFAKVFNTTPDDLD+H+IYDVSHN+AK+E+H+V+ K +TLLVHRKG+TRAFPPHHPLI VDYQ+TGQPVLIGG+MGTCSYVLTGTE GM ETFGTTCHGAGRALSRAKSRRNLD+ +VLDKL + GIAIRVASPKLVMEEAPESYK+VTDVV+TCH  GISKKAIKLRPIAVIKG
Sbjct:   58 GVGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
The following BLAST results are available for this feature:
BLAST of TCONS_00011216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RTCB0.000e+084.60tRNA-splicing ligase RtcB homolog OS=Homo sapiens ... [more]
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