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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011200 ID=TCONS_00011200|Name=TCONS_00011200|organism=Clytia hemisphaerica|type=transcript|length=1796bp
CATTCAtttatcaaaccaatcgaaatttttcattttgaaacatAAGGCGA
ACCACAttctacaaaaatgaaaaatctgtCAACTTCACTCTGCTGGAGAT
ACAATTACGGTGTTTGTTCGAATTTTCACCATAATgttctcatcaaaaaa
tattcttataaaaaaatgtttataacACTAAAGTAGCATGTAACTCAATC
ATTGAAGGGGTTAACTCTAGTTTAAACTATAACGTATTCAAAACCCACCA
ATGAAATTCAAGAACTTTGCTTAGTttatatttcaactttttctgaCCAC
GTAGTCAGTATCGAATGACACCTATGATCACTATAAAAGAGGTTTAAAAT
AAGATGGCAAACCATTCAACACATTCGAAACATCAAAGTCAATTTGAAGC
AACAAACTAGTAACGAAGAACAAAGAAGCCAACATGAAGGGAACTTTCAT
AGCACTTGTGGTCATACTGAGCGTGGCAACGTTCTGCAGTTGTGTTAAAC
TCAGAAATCGGAAAACCTCCATTAAAAATATCAGAAGAATTGCAGCTGCT
CCACCCAAAAAACAAGACCTAGAAGAATTGGTTTTAATAGGTGTCAAAAA
TTACAATGATCTGATTGTCAACTTGCATAATGGGGCTAAAAAGCTGGAGA
TTATCGAGAAGCTCACAAACGTAGCAAAATCCTTGAATAAATTGAACATC
GGACTCGACAAGGAACAACATCATGCAGTACAGGTTATTCTACGAGTCCA
CAGAGAATCGGAGTTCGCTTTAGATCGTGCAAGAGTTGTCATTTCTAAAC
TGAAGAGTCTCTGTGGTGGTTTGATCTTGATTCTTGGTGAGGGTCGATCA
GATGATGATATCAAGTTCGCTATTGAAGTTTTCATGGAAGAAGCAAAAGA
AATGGAGAAACCTATCCAAGAAGCAATGGATTATATGACAGCAGCTATCA
CTAGTGCTGCTACAGTCGAAGGTGAAATGCTCAAACTGAAATCGTGGGTT
AGTAAAAAGAAATCTATAGCCGTATCAAATGAGAAGGAGATCATCAAAGC
GGTACGAGGTGGAGCTTATGGTGGTGCTGCGGTATGTTTATTAACATTGG
TTAAACCGATCCTGGCTGTCATTGTTTGTCCTATAACGTATGGGGTTGTA
TCAGGCGTCATTGAAGGTCACACTATCAAACAAATCGAAAAAGGATTCGA
TAAAACAATCGAGGAAATCGAAAAGATGAGTAAAGATATCAAAGCTATTG
GGACCAGTACAACCGCCTTGGTGCAGAAAGTGAAAGTCCACAAAGACAAA
GTCAGCGATATCCGAATGACTTTACATGACACCCTCAACCGTGGAAAAAT
CGTCGGCTACAGATTTAAAGTACGCTTTTACAACgagttcaaaaagtttt
tgaatttgttgTATAAGAAATGTGAAAGTTATCtccaaagcaaaaagtaa
ttttCTCATTATGTAAAATTTCAACAATAAAACTATTGCGTATTCATAAT
TTTTGACAATATATTAGACTTTTTATAatatactatatatataattCATA
TCTATCTTATATGTAATCATTGTCATACTTCACTGTCTCCAAGTCTGAAT
GATCTCAAGAACGGCTTATCTCAAATATACATAAACTCAGTAACTAATGT
TGCTGGTGAAAAAGATTCTAAAGCTAttcaattaatttcaaaatttcctg
attttgattttgatatgagctatatatatatatatacattgaaaataaaa
aagctatcaGAGGCCgcagttttcaaagaaaatatcaacctctgac Run BLAST on NCBI protein sequence of TCONS_00011200-protein >TCONS_00011200-protein ID=TCONS_00011200-protein|Name=TCONS_00011200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MKGTFIALVVILSVATFCSCVKLRNRKTSIKNIRRIAAAPPKKQDLEELV
LIGVKNYNDLIVNLHNGAKKLEIIEKLTNVAKSLNKLNIGLDKEQHHAVQ
VILRVHRESEFALDRARVVISKLKSLCGGLILILGEGRSDDDIKFAIEVF
MEEAKEMEKPIQEAMDYMTAAITSAATVEGEMLKLKSWVSKKKSIAVSNE
KEIIKAVRGGAYGGAAVCLLTLVKPILAVIVCPITYGVVSGVIEGHTIKQ
IEKGFDKTIEEIEKMSKDIKAIGTSTTALVQKVKVHKDKVSDIRMTLHDT
LNRGKIVGYRFKVRFYNEFKKFLNLLYKKCESYLQSKK Run BLAST on NCBI transcript from alignment at sc0000122:366934..370454+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011200 ID=TCONS_00011200|Name=TCONS_00011200|organism=Clytia hemisphaerica|type=transcript|length=3521bp|location=Sequence derived from alignment at sc0000122:366934..370454+ (Clytia hemisphaerica)
CATTCAtttatcaaaccaatcgaaatttttcattttgaaacatAAGGCGA
ACCACAttctacaaaaatgaaaaatctgtCAACTTCACTCTGCTGGAGAT
ACAATTACGGTGTTTGTTCGAATTTTCACCATAATgttctcatcaaaaaa
tattcttataaaaaaatgtttataacACTAAAGTAGCATGTAACTCAATC
ATTGAAGGGGTTAACTCTAGTTTAAACTATAACGTATTCAAAACCCACCA
ATGAAATTCAAGAACTTTGCTTAGTttatatttcaactttttctgaCCAC
GTAGTCAGTATCGAATGACACCTATGATCACTATAAAAGAGGTTTAAAAT
AAGATGGCAAACCATTCAACACATTCGAAACATCAAAGTCAATTTGAAGC
AACAAACTAGTAACGAAGAACAAAGAAGCCAACATGAAGGGAACTTTCAT
AGCACTTGTGGTCATACTGAGCGTGGCAACGTTCTGCAGTTGTGTTAAAC
TCAGGTGAGTTTAGGCTGTGTTTACCATCTTTTCACATAATACTATCCtt
ggtttgaaaatattttaaatttcgtCCCCAATGGACAAAGGTAAactttt
tttatccttttttttatatttgctcAAAAACTACCAccgttttttattta
ttttattagaTTCTATACCCCTTTCCTCTGTGCCACAGTAGGTGTCAAAA
ACCTACTTGACACTTTTGACAATTCCATGCATTAAGAAattagaaagttt
taaaatgttgtaaaggaaaattaGATATAAGACTTCTGCCACCGTGCTTC
TGCTAAGATTTAAGAATTCTATTTTCATTATACTCAGAAATCGGAAAACC
TCCATTAAAAATATCAGAAGAATTGCAGCTGCTCCACCCAAAAAACAAGA
CCTAGAAGAATTGGTTTTAATAGGTGTCAAAAATTACAATGATCTGATTG
TCAACTTGCATAATGGGGCTAAAAAGCTGGAGATTATCGAGAAGCTCACA
AACGTAGCAAAATCCTTGAATAAATTGAACATCGGACTCGACAAGGAACA
ACATCATGCAGTACAGGTTATTCTACGAGTCCACAGAGAATCGGAGTTCG
CTTTAGATCGTGCAAGAGTTGTCATTTCTAAACTGAAGAGTCTCTGTGGT
GGTTTGATCTTGATTCTTGGTGAGGGTCGATCAGATGATGATATCAAGTT
CGCTATTGAAGTTTTCATGGAAGAAGCAAAAGAAATGGAGAAACCTATCC
AAGAAGCAATGGATTATATGACAGCAGCTATCACTAGTGCTGCTACAGGT
ATGTGAGATTACTATATAGttgactctctttaattcgaatttcAAGTGGA
ATAGAATTTTCCTCGAATAAGGGAGCGCATCGAATAGTAAGAACATGTCG
TTtctgagagtttcttgttgacggtgattTTCAATactatcgaataatgg
agcgtatcgaatagtaaaaCGTTGTATAAGAGAGTGTCAATTGTATCTTG
AatttctccttaactcgaacaaattttctaGTCTTCTCAGTTAAACAAAC
CCTTGTAAATTTTCCATGATTTGACTTGAACAAATTTCAATTCTCCATCT
TTATTCGAGCTATCATTAGAAGTAAATATATAGGGTTGGGGTACCTTTTT
AGTTCAATACATCACTAATTTAGCGAATGAGGTATAAGTGGTATAAGTAT
ATTGGAGATGAGAGTAGCAGGACTGGCATAAAACATCTCTTTCGCTCTCA
GTTTTCGAGAAAGCTTTCAGATAAACGTTTTGATCTTTGAATTAGTGTAT
ACTTacttttgattaattttgtTAAGGGTTATATAGGTGGTATGACTAAA
AAAATGTAATCTCCTTAAATAATTTTAATCAGCTTGTAAAAATTCTTACT
AAAATTTGTTATCTTCTTTTTCAGTCGAAGGTGAAATGCTCAAACTGAAA
TCGTGGGTTAGTAAAAAGAAATCTATAGCCGTATCAAATGAGAAGGAGAT
CATCAAAGCGGTACGAGGTGGAGCTTATGGTGGTGCTGGTAAGTTATTGA
TGGCTATCATTCATCAAATATCGATTCTGCCTTTTTTTTAAGTCTGAGAA
CTTTGAAACGCGCCAGTTCAATAAAGTGTTTTCCACCATTCAATGATACC
TACAATCGTTTCTTGACACTCTGAAGCTttactacaatcagtgccaaaat
acttggcacaaaagggaaattccccacgaaattttataaccacaaacaac
TTGGAACTTACAACGTAGGTAGAGTTtctaactctgagttttaacgctaa
actcaagacttaggaccttaggatctgaggatccgaaagttcaaaaatag
tccggtagggcttgaaatatagcctccctcccagatcgaaatattcgatg
aaaccAGGTTGgaggcccgaaattgacattctcgctcgaacttcaatttt
cgaaaaatggtagaATAGCCAAAATTgacaatatgttatggcacacTGAT
TGTAACAACGTTATGCAAAATTTTATAATCATAGGTCAGAGGTCAGGTTA
GGATGGTTAGGATGGTTaggttttgccttttttaaggcATGTCTTACAGT
CCAGtgaaaaccctgtaaaatctcaaaatcttaTAATTAGCATAATTTTT
CGGTACAGTCATCCAATTGAgtcatcaaattaaaaaaaatacaatctcGC
TCCCAAGGCTACTTGTGGACTCGTTTGTGGAAactatcagaatcatcaat
agtaaactaagggactgggttcgacTTCATTAACCTCCTTCTTGTTCTGT
TTAGCGGTATGTTTATTAACATTGGTTAAACCGATCCTGGCTGTCATTGT
TTGTCCTATAACGTATGGGGTTGTATCAGGCGTCATTGAAGGTCACACTA
TCAAACAAATCGAAAAAGGATTCGATAAAACAATCGAGGAAATCGAAAAG
ATGAGTAAAGATATCAAAGCTATTGGGACCAGTACAACCGCCTTGGTGCA
GAAAGTGAAAGTCCACAAAGACAAAGTCAGCGATATCCGAATGACTTTAC
ATGACACCCTCAACCGTGGAAAAATCGTCGGCTACAGATTTAAAGTACGC
TTTTACAACgagttcaaaaagtttttgaatttgttgTATAAGAAATGTGA
AAGTTATCtccaaagcaaaaagtaattttCTCATTATGTAAAATTTCAAC
AATAAAACTATTGCGTATTCATAATTTTTGACAATATATTAGACTTTTTA
TAatatactatatatataattCATATCTATCTTATATGTAATCATTGTCA
TACTTCACTGTCTCCAAGTCTGAATGATCTCAAGAACGGCTTATCTCAAA
TATACATAAACTCAGTAACTAATGTTGCTGGTGAAAAAGATTCTAAAGCT
Attcaattaatttcaaaatttcctgattttgattttgatatgagctatat
atatatatatacattgaaaataaaaaagctatcaGAGGCCgcagttttca
aagaaaatatcaacctctgac Coding sequence (CDS) from alignment at sc0000122:366934..370454+ >TCONS_00011200 ID=TCONS_00011200|Name=TCONS_00011200|organism=Clytia hemisphaerica|type=CDS|length=4068bp|location=Sequence derived from alignment at sc0000122:366934..370454+ (Clytia hemisphaerica)
ATGAAGGGAACTTTCATAGCACTTGTGGTCATACTGAGCGTGGCAACGTT
CTGCAGTTGTGTTAAACTCAGAAATCGGAAAACCTCCATTAAAAATATCA
GAAGAATTGCAGCTGCTCCACCCAAAAAACAAGACCTAGAAGAATTGGTT
TTAATAGGTGTCAAAAATTACAATGATCTGATTGTCAACTTGCATAATGG
GGCTAAAAAGCTGGAGATTATCGAGAAGCTCACAAACGTAGCAAAATCCT
TGAATAAATTGAACATCGGACTCGACAAGGAACAACATCATGCAGTACAG
GTTATTCTACGAGTCCACAGAGAATCGGAGTTCGCTTTAGATCGTGCAAG
AGTTGTCATTTCTAAACTGAAGAGTCTCTGTGGTGGTTTGATCTTGATTC
TTGGTGAGGGTCGATCAGATGATGATATCAAGTTCGCTATTGAAGTTTTC
ATGGAAGAAGCAAAAGAAATGGAGAAACCTATCCAAGAAGCAATGGATTA
TATGACAGCAGCTATCACTAGTGCTGCTACAGTCGAAGGTGAAATGCTCA
AACTGAAATCGTGGGTTAGTAAAAAGAAATCTATAGCCGTATCAAATGAG
AAGGAGATCATCAAAGCGGTACGAGGTGGAGCTTATGGTGGTGCTGCGGT
ATGTTTATTAACATTGGTTAAACCGATCCTGGCTGTCATTGTTTGTCCTA
TAACGTATGGGGTTGTATCAGGCGTCATTGAAGGTCACACTATCAAACAA
ATCGAAAAAGGATTCGATAAAACAATCGAGGAAATCGAAAAGATGAGTAA
AGATATCAAAGCTATTGGGACCAGTACAACCGCCTTGGTGCAGAAAGTGA
AAGTCCACAAAGACAAAGTCAGCGATATCCGAATGACTTTACATGACACC
CTCAACCGTGGAAAAATCGTCGGCTACAGATTTAAAGTACGCTTTTACAA
CgagttcaaaaagtttttgaatttgttgTATAAGAAATGTGAAAGTTATC
tccaaagcaaaaagtaaATGAAGGGAACTTTCATAGCACTTGTGGTCATA
CTGAGCGTGGCAACGTTCTGCAGTTGTGTTAAACTCAGAAATCGGAAAAC
CTCCATTAAAAATATCAGAAGAATTGCAGCTGCTCCACCCAAAAAACAAG
ACCTAGAAGAATTGGTTTTAATAGGTGTCAAAAATTACAATGATCTGATT
GTCAACTTGCATAATGGGGCTAAAAAGCTGGAGATTATCGAGAAGCTCAC
AAACGTAGCAAAATCCTTGAATAAATTGAACATCGGACTCGACAAGGAAC
AACATCATGCAGTACAGGTTATTCTACGAGTCCACAGAGAATCGGAGTTC
GCTTTAGATCGTGCAAGAGTTGTCATTTCTAAACTGAAGAGTCTCTGTGG
TGGTTTGATCTTGATTCTTGGTGAGGGTCGATCAGATGATGATATCAAGT
TCGCTATTGAAGTTTTCATGGAAGAAGCAAAAGAAATGGAGAAACCTATC
CAAGAAGCAATGGATTATATGACAGCAGCTATCACTAGTGCTGCTACAGT
CGAAGGTGAAATGCTCAAACTGAAATCGTGGGTTAGTAAAAAGAAATCTA
TAGCCGTATCAAATGAGAAGGAGATCATCAAAGCGGTACGAGGTGGAGCT
TATGGTGGTGCTGCGGTATGTTTATTAACATTGGTTAAACCGATCCTGGC
TGTCATTGTTTGTCCTATAACGTATGGGGTTGTATCAGGCGTCATTGAAG
GTCACACTATCAAACAAATCGAAAAAGGATTCGATAAAACAATCGAGGAA
ATCGAAAAGATGAGTAAAGATATCAAAGCTATTGGGACCAGTACAACCGC
CTTGGTGCAGAAAGTGAAAGTCCACAAAGACAAAGTCAGCGATATCCGAA
TGACTTTACATGACACCCTCAACCGTGGAAAAATCGTCGGCTACAGATTT
AAAGTACGCTTTTACAACgagttcaaaaagtttttgaatttgttgTATAA
GAAATGTGAAAGTTATCtccaaagcaaaaagtaaATGAAGGGAACTTTCA
TAGCACTTGTGGTCATACTGAGCGTGGCAACGTTCTGCAGTTGTGTTAAA
CTCAGAAATCGGAAAACCTCCATTAAAAATATCAGAAGAATTGCAGCTGC
TCCACCCAAAAAACAAGACCTAGAAGAATTGGTTTTAATAGGTGTCAAAA
ATTACAATGATCTGATTGTCAACTTGCATAATGGGGCTAAAAAGCTGGAG
ATTATCGAGAAGCTCACAAACGTAGCAAAATCCTTGAATAAATTGAACAT
CGGACTCGACAAGGAACAACATCATGCAGTACAGGTTATTCTACGAGTCC
ACAGAGAATCGGAGTTCGCTTTAGATCGTGCAAGAGTTGTCATTTCTAAA
CTGAAGAGTCTCTGTGGTGGTTTGATCTTGATTCTTGGTGAGGGTCGATC
AGATGATGATATCAAGTTCGCTATTGAAGTTTTCATGGAAGAAGCAAAAG
AAATGGAGAAACCTATCCAAGAAGCAATGGATTATATGACAGCAGCTATC
ACTAGTGCTGCTACAGTCGAAGGTGAAATGCTCAAACTGAAATCGTGGGT
TAGTAAAAAGAAATCTATAGCCGTATCAAATGAGAAGGAGATCATCAAAG
CGGTACGAGGTGGAGCTTATGGTGGTGCTGCGGTATGTTTATTAACATTG
GTTAAACCGATCCTGGCTGTCATTGTTTGTCCTATAACGTATGGGGTTGT
ATCAGGCGTCATTGAAGGTCACACTATCAAACAAATCGAAAAAGGATTCG
ATAAAACAATCGAGGAAATCGAAAAGATGAGTAAAGATATCAAAGCTATT
GGGACCAGTACAACCGCCTTGGTGCAGAAAGTGAAAGTCCACAAAGACAA
AGTCAGCGATATCCGAATGACTTTACATGACACCCTCAACCGTGGAAAAA
TCGTCGGCTACAGATTTAAAGTACGCTTTTACAACgagttcaaaaagttt
ttgaatttgttgTATAAGAAATGTGAAAGTTATCtccaaagcaaaaagta
aATGAAGGGAACTTTCATAGCACTTGTGGTCATACTGAGCGTGGCAACGT
TCTGCAGTTGTGTTAAACTCAGAAATCGGAAAACCTCCATTAAAAATATC
AGAAGAATTGCAGCTGCTCCACCCAAAAAACAAGACCTAGAAGAATTGGT
TTTAATAGGTGTCAAAAATTACAATGATCTGATTGTCAACTTGCATAATG
GGGCTAAAAAGCTGGAGATTATCGAGAAGCTCACAAACGTAGCAAAATCC
TTGAATAAATTGAACATCGGACTCGACAAGGAACAACATCATGCAGTACA
GGTTATTCTACGAGTCCACAGAGAATCGGAGTTCGCTTTAGATCGTGCAA
GAGTTGTCATTTCTAAACTGAAGAGTCTCTGTGGTGGTTTGATCTTGATT
CTTGGTGAGGGTCGATCAGATGATGATATCAAGTTCGCTATTGAAGTTTT
CATGGAAGAAGCAAAAGAAATGGAGAAACCTATCCAAGAAGCAATGGATT
ATATGACAGCAGCTATCACTAGTGCTGCTACAGTCGAAGGTGAAATGCTC
AAACTGAAATCGTGGGTTAGTAAAAAGAAATCTATAGCCGTATCAAATGA
GAAGGAGATCATCAAAGCGGTACGAGGTGGAGCTTATGGTGGTGCTGCGG
TATGTTTATTAACATTGGTTAAACCGATCCTGGCTGTCATTGTTTGTCCT
ATAACGTATGGGGTTGTATCAGGCGTCATTGAAGGTCACACTATCAAACA
AATCGAAAAAGGATTCGATAAAACAATCGAGGAAATCGAAAAGATGAGTA
AAGATATCAAAGCTATTGGGACCAGTACAACCGCCTTGGTGCAGAAAGTG
AAAGTCCACAAAGACAAAGTCAGCGATATCCGAATGACTTTACATGACAC
CCTCAACCGTGGAAAAATCGTCGGCTACAGATTTAAAGTACGCTTTTACA
ACgagttcaaaaagtttttgaatttgttgTATAAGAAATGTGAAAGTTAT
Ctccaaagcaaaaagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011200-exon-sc0000122-1491911889:366934..367437 | TCONS_00011200-exon-sc0000122-1491911889:366934..367437 | Clytia hemisphaerica | exon |
| TCONS_00011200-exon-sc0000122-1510915933:366934..367437 | TCONS_00011200-exon-sc0000122-1510915933:366934..367437 | Clytia hemisphaerica | exon |
| TCONS_00011200-exon-sc0000122-1575043694:366934..367437 | TCONS_00011200-exon-sc0000122-1575043694:366934..367437 | Clytia hemisphaerica | exon |
| TCONS_00011200-exon-sc0000122-1491911889:367771..368231 | TCONS_00011200-exon-sc0000122-1491911889:367771..368231 | Clytia hemisphaerica | exon |
| TCONS_00011200-exon-sc0000122-1510915933:367771..368231 | TCONS_00011200-exon-sc0000122-1510915933:367771..368231 | Clytia hemisphaerica | exon |
| TCONS_00011200-exon-sc0000122-1575043694:367771..368231 | TCONS_00011200-exon-sc0000122-1575043694:367771..368231 | Clytia hemisphaerica | exon |
| TCONS_00011200-exon-sc0000122-1491911889:368858..368971 | TCONS_00011200-exon-sc0000122-1491911889:368858..368971 | Clytia hemisphaerica | exon |
| TCONS_00011200-exon-sc0000122-1510915933:368858..368971 | TCONS_00011200-exon-sc0000122-1510915933:368858..368971 | Clytia hemisphaerica | exon |
| TCONS_00011200-exon-sc0000122-1575043694:368858..368971 | TCONS_00011200-exon-sc0000122-1575043694:368858..368971 | Clytia hemisphaerica | exon |
| TCONS_00011200-exon-sc0000122-1491911889:369738..370454 | TCONS_00011200-exon-sc0000122-1491911889:369738..370454 | Clytia hemisphaerica | exon |
| TCONS_00011200-exon-sc0000122-1510915933:369738..370454 | TCONS_00011200-exon-sc0000122-1510915933:369738..370454 | Clytia hemisphaerica | exon |
| TCONS_00011200-exon-sc0000122-1575043694:369738..370454 | TCONS_00011200-exon-sc0000122-1575043694:369738..370454 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000122 | supercontig | sc0000122:366934..370454 + |
Blast
The following BLAST results are available for this feature:
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