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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011198 ID=TCONS_00011198|Name=TCONS_00011198|organism=Clytia hemisphaerica|type=transcript|length=2969bpRun BLAST on NCBI protein sequence of TCONS_00011198-protein >TCONS_00011198-protein ID=TCONS_00011198-protein|Name=TCONS_00011198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=619bp MVTMQEIINEEMEEIANADVESNPERVVAKGYGLVTGIASQPNSFKLDARRun BLAST on NCBI transcript from alignment at sc0000122:356118..364899+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011198 ID=TCONS_00011198|Name=TCONS_00011198|organism=Clytia hemisphaerica|type=transcript|length=8782bp|location=Sequence derived from alignment at sc0000122:356118..364899+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000122:356118..364899+ >TCONS_00011198 ID=TCONS_00011198|Name=TCONS_00011198|organism=Clytia hemisphaerica|type=CDS|length=7440bp|location=Sequence derived from alignment at sc0000122:356118..364899+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011198 vs. Swiss-Prot (Human)
Match: FLNA (Filamin-A OS=Homo sapiens GN=FLNA PE=1 SV=4) HSP 1 Score: 203.371 bits (516), Expect = 4.627e-53 Identity = 165/613 (26.92%), Postives = 281/613 (45.84%), Query Frame = 1
Query: 373 RVVAKGYGLVTGIASQPNSFKLDAREAGYGDFDVVIKGASRASIEYIEEEEALYKIKYFVELPGLYQIEIKYDLKHIPGSPFTAKVIDGSTMENQSICKTEGTNSTESFSTINETAPSDEEPPTANNNGKSLPIFADIKLPSGKTIIGTCVQNAAGKVTVNFPREETGTYTVTLKHKKSGKILPGSPYEVSVQAKPQKTT--MTAYGTGLKEASIDKTNCFTVFGSKGVEITDVCILVFGPYSCKLKVVQNDWDSFDILYEVKRSGSYQFYIHENGRDIPGSPFIVIAKGTSQNSTQILSSYV--ATVWHGQPSTNLKTI--------TDMTSPSGQKVSHSLARKGKHVMEIRFLPSQNGIFILDL-FKGQRDMEQVFNIRV-EALPSSNESVFQISGDGLHTATVNKPSSVKIHSVLPSLKSFSIEFDGPGAVDIVQQKSDKSSSGCAIEYVGRVPGSYAMSIKYDG-FHVEGSPFDVTILPAHGMISDVPFNMNS------------VKQQKSSKP---NAKACIVQGDQLHRAYLDKAKTFTIDTSKAGEGVLMAGFHTSLS-ATEVKCKHLGNSVYEVQYMIGEIGLHKLSVFWSGENIVGSPFEIIV 2118
RV G GL G +P F +D R+AGYG + I+G S+ I + E+ ++ Y PG Y I IK+ +H+PGSPF+ KV G +SI + S + + + + E + + A + PSGKT V+ + F E GT+TV++K+K G+ +PGSP++ +V + + A G GL+ A F+++ ++ + I V GP ++ S + Y V+ G Y+ + N IP SPF+V S ++ ++ S + + + QP++ ++ + SPSG + + +RF+P +NG++++D+ F G F IRV E + + G GL P+ +++ + S+ DGP V + Q+ + G + Y PGSY +SIKY G +H+ GSPF + ++S+ + S Q + P +A + +G L +AY+ + +FT+D SKAG +L+ G H + E+ KH+G+ +Y V Y++ + G + L V W E+I GSP+ ++V
Sbjct: 2049 RVRVSGQGLHEGHTFEPAEFIIDTRDAGYGGLSLSIEGPSKVDINTEDLEDGTCRVTYCPTEPGNYIINIKFADQHVPGSPFSVKVT-GEGRVKESITRRRRAPSVANVGSHCDLSLKIPEISIQD-------MTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYK--GQHVPGSPFQFTVGPLGEGGAHKVRAGGPGLERAEAGVPAEFSIW-TREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASPSGDARRLTVSSLQESGLKVNQPASFAVSLNGAKGAIDAKVHSPSGALEECYVTEIDQDKYAVRFIPRENGVYLIDVKFNGTHIPGSPFKIRVGEPGHGGDPGLVSAYGAGLEGGVTGNPAEFVVNTSNAGAGALSVTIDGPSKVKMDCQECPE---GYRVTYTPMAPGSYLISIKYGGPYHIGGSPFKAKVTGPR-LVSNHSLHETSSVFVDSLTKATCAPQHGAPGPGPADASKVVAKGLGLSKAYVGQKSSFTVDCSKAGNNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGDEHIPGSPYRVVV 2646 HSP 2 Score: 147.517 bits (371), Expect = 1.088e-35 Identity = 148/601 (24.63%), Postives = 254/601 (42.26%), Query Frame = 1
Query: 364 NPERVVAKGYGLVTGIASQPNSFKLDAREAGYGDFDVVIKGASRASIEYIEEEEALYKIKYFVELPGLYQIEIKYDLKHIPGSPFTAKVIDGSTMENQSICKTEGTNSTESFSTINETAPSDEEPPTANNNGKSLPIFADIKLPSGKTIIGTCVQNAAGKVTVNFPREETGTYTVTLKHKKSGKILPGSPYEVSVQAKP--QKTTMTAYGTGLKEASIDKTNCFTVFGSKGVEITDVCILVFGPYSCKLKVVQNDWDSFDILYEVKRSGSYQFYIHENGRDIPGSPFIVIAKGTSQNSTQIL----SSYVATVW-HGQPSTNLK--TITDM----TSPSGQKVSHSLARKGKHVMEIRFLPSQNGIFILDL-FKGQRDMEQVFNIRVEALPSSNESVFQISGDGLHTATVNKPSSVKIHSVLPSLKSFSIEFDGPGAVDIVQQKSDKSSSGCAIEYVGRVPGSYAMSIKYDGFHVEGSPFDVTILPAHGMISDVPFNMNSVKQQKSSKPNAKACIVQGDQLHRAYLDKAKTFTIDTSKAGEGVLMAGFHTSLSATEVKC--KHLGNSVYEVQYMIGEIGLHKLSVFWSGENIVGSPFEIIV 2118
N V A G GL G+ ++P +F ++ ++AG G + I+G S+A I + ++ + Y LPG Y I +KY+ +H+PGSPFTA+V +M + + + + P + SL + A + PSG+ + G V ++F +ETG + V + KK+G+ + SP V + + + G GL E + F + ++ + + + GP + + + + Y G+Y I + +PGSPF V G + I + VA V H S + +I DM TSPSG+ + H IRF+P++ G + + +KGQ F V L + G GL A P+ I + +I +GP +I + D+ C + YV + PG Y +S+K++ H+ SPF V + G +A+ V Q +++ +F + + A +G + A H+ A E +C + Y V+++ E G++ + V ++G +I GSPF+I V
Sbjct: 1864 NCGHVTAYGPGLTHGVVNKPATFTVNTKDAGEGGLSLAIEGPSKAEISCTDNQDGTCSVSYLPVLPGDYSILVKYNEQHVPGSPFTARVTGDDSMRMSHL----------------KVGSAADIPINISETDLSL-LTATVVPPSGREEPCLLKRLRNGHVGISFVPKETGEHLVHV--KKNGQHVASSPIPVVISQSEIGDASRVRVSGQGLHEGHTFEPAEF-IIDTRDAGYGGLSLSIEGPSKVDINTEDLEDGTCRVTYCPTEPGNYIINIKFADQHVPGSPFSVKVTGEGRVKESITRRRRAPSVANVGSHCDLSLKIPEISIQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKGQHVPGSPFQFTVGPLGEGGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFE--DRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASPSG--------------------DARRLTVSSLQESGLKVNQPASFAVSLNGA-KGAIDAKVHSPSGALE-ECYVTEIDQDKYAVRFIPRENGVYLIDVKFNGTHIPGSPFKIRV 2420 HSP 3 Score: 104.76 bits (260), Expect = 1.630e-22 Identity = 139/637 (21.82%), Postives = 241/637 (37.83%), Query Frame = 1
Query: 373 RVVAKGYGLVTGI--ASQPNSFKLDAREAGYGDFDVVIKGASR--ASIEYIEEEEALYKIKYFVELPGLYQIEIKYDLKHIPGSPFTAKVI---DGSTMENQSICKTEGTNSTESFSTINETAPSDEEPPTANNNGKSLPIFADIKLPSGKTIIGTCVQNAAGKVTVNFPREETGTYTVTLKHKKSGKILPGSPYEVSVQAKPQKTTMTAYGTGLKEASIDKTNCFTVFGSKGVEITDVCILVFGPYSC----------KLKVVQNDWDSFDILYEVKRSGSYQFYIHENGRDIPGSPFIVIAKGTSQNSTQ--ILSSYVA----------TVW---------HGQPSTNLKTIT--------------DMTSPSGQKVSHSLARKGKHVMEIRFLPSQNGIFILDL-FKGQRDMEQVFNIRVEALPSSNESVFQISGDGLHTATVNKPSSVKIHSVLPSLKSFSIEFDGPGAVDIVQQKSDKSSSGCAIEYVGRVPGSYAMSIKYDGFHVEGSPFDVTILPAHGMISDVPFNMNSVKQQKSSKPNAKACIVQGDQLHRAYLDKAKTFTIDTSKAGEGVLMAGFHTSLSATEVKC--KHLGNSVYEVQYMIGEIGLHKLSVFWSGENIVGSPFEIIV 2118
+V G GL G+ A+ P SF++D +AG V ++G ++ ++ + + Y G Y I + Y + +P SPF KV+ D S ++ G N+T +++ D A + G+ L + I P GK N G TV + + TG YT+ +K+ G +P SPY V + T + G + V D G +C + VV+N+ +FDI Y + G Y + G +P SPF V A Q S Q + S +A W +G T+L+ ++ PSG+ ++ + +R+ PS+ G+ +D+ + V+ + + + + G GL VNKP++ +++ S+ +GP +I +D C++ Y+ +PG Y++ +KY+ HV GSPF + D M+ +K + A I+ S+ +L A S E C K L N + ++ E G H + V +G+++ SP +++
Sbjct: 1450 KVKCSGPGLSPGMVRANLPQSFQVDTSKAGVAPLQVKVQGPKGLVEPVDVVDNADGTQTVNYVPSREGPYSISVLYGDEEVPRSPFKVKVLPTHDASKVKASG----PGLNTTGVPASLPVEFTID-----AKDAGEGL-LAVQITDPEGKPKKTHIQDNHDGTYTVAYVPDVTGRYTILIKY--GGDEIPFSPYRVRAVPTGDASKCTVTVSIGGHGLGAGIGPTIQIGEETVITVDTKAAGKGKVTCTVCTPDGSEVDVDVVENEDGTFDIFYTAPQPGKYVICVRFGGEHVPNSPFQVTALAGDQPSVQPPLRSQQLAPQYTYAQGGQQTWAPERPLVGVNGLDVTSLRPFDLVIPFTIKKGEITGEVRMPSGKVAQPTITDNKDGTVTVRYAPSEAGLHEMDIRYDNMHIPGSPLQFYVDYVNCGHVTAY---GPGLTHGVVNKPATFTVNTKDAGEGGLSLAIEGPSKAEI--SCTDNQDGTCSVSYLPVLPGDYSILVKYNEQHVPGSPFTARV------TGDDSMRMSHLK-----------------------VGSAADIPINISETDLSLLTATV-VPPSGREEPCLLKRLRNGHVGISFVPKETGEHLVHVKKNGQHVASSPIPVVI 2039 HSP 4 Score: 98.5969 bits (244), Expect = 1.398e-20 Identity = 144/633 (22.75%), Postives = 250/633 (39.49%), Query Frame = 1
Query: 361 SNPERVVAKGYGLVTGIASQPNSFKLDAREAGYGDFDVVIKGASRASIEYIEEEEALYKIKYFVELPGLYQIEIKYDLKHIPGSPFTAKVI---DGSTMENQSICKTEGTNSTESFSTINETAPSDEEPPTANNNGKSLPIFADIKLPSGKTIIGTCVQNAAGKVTVNFPREETGTYTVTLKHKKSGKILPGSPYEVSVQAKPQKTTMTAYGTGLKEASIDKTNCFTVFGSKGVEITDVCILVFGPYSCKLKV-----------VQNDWDS-FDILYEVKRSGSYQFYIHENGRDIPGSPFIV-IAKGTSQNSTQILSSYVATVWHGQPS---------TNLKTITDMTSPSGQKVSHSLARKGKHVMEIRFLPSQNGIFILDL-FKGQRDMEQVFNIRVEALPSSNESVFQISGDGLHTATV--NKPSSVKIHSVLPSLKSFSIEFDGPGA----VDIVQQKSDKSSSGCAIEYVGRVPGSYAMSIKYDGFHVEGSPFDVTILPAHGMISDVPFNMNSVKQQKSSKPNAKACIVQGDQLHRAYLDKAKTFTIDTSKAGEGVLMAGF---HTSLSATEVKCKHLGNSVYEVQYMIGEIGLHKLSVFWSGENIVGSPFEIIVIDENNNAESSSC 2154
+ P +V A G GL G A P F +D + AG G + ++G A +E ++ + + Y PG Y I I + HIPGSPF A V+ D S ++ C G +T E + +A + ++ I ++ LP+ I + G T+ + G YTVT+K+ G+ +P P ++ V+ + + YG G++ + + T F +T GP+ K +V VQ+ D + + Y G + + +G +P SPF V + +G + ++ + + +P+ + PS K+S + G + ++P + G + L++ + G + F + V + ++ S + SG GL V N P S ++ + + ++ GP VD+V D + + YV G Y++S+ Y V SPF V +LP H + K+S P V FTID AGEG+L T ++ H G Y V Y+ G + + + + G+ I SP+ + + ++S C
Sbjct: 1065 TKPSKVKAFGPGLQGGSAGSPARFTIDTKGAGTGGLGLTVEGPCEAQLECLDNGDGTCSVSYVPTEPGDYNINILFADTHIPGSPFKAHVVPCFDASKVK----CSGPGLER----ATAGEVGQFQVDCSSAGSAELTIEICSEAGLPAEVYI----QDHGDGTHTITYIPLCPGAYTVTIKY--GGQPVPNFPSKLQVEPAVDTSGVQCYGPGIEGQGVFR-EATTEFSVDARALTQTG----GPH-VKARVANPSGNLTETYVQDRGDGMYKVEYTPYEEGLHSVDVTYDGSPVPSSPFQVPVTEGCDPSRVRVHGPGIQSGTTNKPNKFTVETRGAGTGGLGLAVEGPSEAKMSCMDNKDGS--CSVEYIPYEAGTYSLNVTYGGHQVPGSPFKVPVHDV--TDASKVKCSGPGLSPGMVRANLPQSFQVDTSKAGVAPLQVKVQGPKGLVEPVDVV----DNADGTQTVNYVPSREGPYSISVLYGDEEVPRSPFKVKVLPTH-----------DASKVKASGPGLNTTGVPASL--------PVEFTIDAKDAGEGLLAVQITDPEGKPKKTHIQDNHDGT--YTVAYVPDVTGRYTILIKYGGDEIPFSPYRVRAVP---TGDASKC 1645 HSP 5 Score: 85.8853 bits (211), Expect = 1.045e-16 Identity = 79/294 (26.87%), Postives = 125/294 (42.52%), Query Frame = 1
Query: 358 ESNPERVVAKGYGLVTGIASQPNSFKLDAREAGYGDFDVVIKGASRASIEYIEEEEALYKIKYFVELPGLYQIEIKYDLKHIPGSPFTAKVIDGSTMENQSICKTEGTNSTESFSTINETAPSDEEPPT--ANNNGKSLPIFADIKLPSGKTIIGTCVQNAAGKVTVNFPREETGTYTVTLKHKKSGKILPGSPYEVSVQAKP----QKTTMTAYGTGLKEASIDKTNCFTVFGSKGVEITDVCILVFGPYSCKLKVVQNDWDSFDILYEVKRSGSYQFYIHENGR-DIPGSPF 1218
E +V A G GL A P F + REAG G + ++G S+A I + + ++ + Y V+ PG Y++ +K++ +HIP SPF V S G + S++ E+ +P + + NG I A + PSG + K V F E G Y + +K +G +PGSP+++ V +P ++AYG GL E + V + + + + GP K+ Q + + + Y GSY I G I GSPF
Sbjct: 2235 EGGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASPS-----------GDARRLTVSSLQESGLKVNQPASFAVSLNGAKGAIDAKVHSPSGALEECYVTEIDQDKYAVRFIPRENGVYLIDVKF--NGTHIPGSPFKIRV-GEPGHGGDPGLVSAYGAGL-EGGVTGNPAEFVVNTSNAGAGALSVTIDGPSKVKMD-CQECPEGYRVTYTPMAPGSYLISIKYGGPYHIGGSPF 2512 HSP 6 Score: 82.4185 bits (202), Expect = 9.675e-16 Identity = 137/624 (21.96%), Postives = 246/624 (39.42%), Query Frame = 1
Query: 358 ESNPERVVAKGYGLVTGIASQPNSFKLDAREAGYGDFDVVIKGASRASIEYIEEEEALYKIKYFVELPGLYQIEIKYDLKHIPGSPFTAKVIDGSTMENQSICKTEGTNSTESFSTINETAPSDEEPPTANNNGKSLPIFADIKLPSGKTIIGTCVQNAAGKVTVNFPREETGTYTVTLKHKKSGKILPGSPYEVSVQAKPQKTTMTAYGTGLKEASID--KTNCFTV----FGSKGVEITDVCIL-VFGPYSCKL--KVVQNDWDSFDILYEVKRSGSYQFYIHENGRDIPGSPFIVIAKGTSQNSTQILSSYVATVWHGQPSTNLKTITDMTSPSGQKVSHSLARKGK------------------------HVMEIRFLPSQNGIFILDL-FKGQRDMEQVFNIRVEALPSSNESVFQISGDGLHTATVNKPSSVKIHSVLPSLKS-FSIEFDGP-GAVDIVQQKSDKSSSGCAIEYVGRVPGSYAMSIKYDGFHVEGSPFDVTILPAHGMISDVPFNMNSVKQQKSSKPNAKACIVQGDQLHRAYLDKAKTFTIDTSKAGEGVLMAGFHTSLSATEVKCKHLGNSVYEVQYMIGEIGLHKLSVFWSGENIVGSPFEIIVI 2121
E ++V A G GL G+ + F ++A G ++G S+A IE ++ + ++Y+ + G Y + + + + I SPF A + D + K G ++ +N+ A E A + GK+ P+ ++ G + N G + ++ + +T + G +P SP+ V+V A + YG G+ + + + FTV G V I C V GP + +++ND D+F + Y + +GSY + + P SP V ++ S+ A+ + +T ++ P+ V+ A KGK + +++ P Q G +++ + G + F++ V PS + S ++SG G V K + S + + + GP GA + + + + ++ R G Y + + YDG V GSPF + +V K SK A +QG FTIDT AG G L A +++C G+ V Y+ E G + +++ ++ +I GSPF+ V+
Sbjct: 573 ECGNQKVRAWGPGLEGGVVGKSADFVVEAIGDDVGTLGFSVEGPSQAKIECDDKGDGSCDVRYWPQEAGEYAVHVLCNSEDIRLSPFMADIRDAPQDFHPDRVKARGPGLEKTGVAVNKPA---EFTVDAKHGGKA-PLRVQVQDNEGCPVEALVKDNGNGTYSCSYVPRKPVKHTAMVSW--GGVSIPNSPFRVNVGAGSHPNKVKVYGPGVAKTGLKAHEPTYFTVDCAEAGQGDVSIGIKCAPGVVGPAEADIDFDIIRNDNDTFTVKYTPRGAGSYTIMVLFADQATPTSPIRV----------KVEPSHDASKVKAEGPGLSRTGVELGKPTHFTVNAKAAGKGKLDVQFSGLTKGDAVRDVDIIDHHDNTYTVKYTPVQQGPVGVNVTYGGDPIPKSPFSVAVS--PSLDLSKIKVSGLG-EKVDVGKDQEFTVKSKGAGGQGKVASKIVGPSGAAVPCKVEPGLGADNSVVRFLPREEGPYEVEVTYDGVPVPGSPFP----------------LEAVAPTKPSKVKAFGPGLQG-----GSAGSPARFTIDTKGAGTGGLGLTVEGPCEA-QLECLDNGDGTCSVSYVPTEPGDYNINILFADTHIPGSPFKAHVV 1155 The following BLAST results are available for this feature:
BLAST of TCONS_00011198 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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