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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011197 ID=TCONS_00011197|Name=TCONS_00011197|organism=Clytia hemisphaerica|type=transcript|length=2625bpRun BLAST on NCBI protein sequence of TCONS_00011197-protein >TCONS_00011197-protein ID=TCONS_00011197-protein|Name=TCONS_00011197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=677bp VQDVESVDKRRLFHLGSLQANHARCKTLLTDWRGTKNSSTFLKLENNKLIRun BLAST on NCBI transcript from alignment at sc0000122:340662..351793+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011197 ID=TCONS_00011197|Name=TCONS_00011197|organism=Clytia hemisphaerica|type=transcript|length=11132bp|location=Sequence derived from alignment at sc0000122:340662..351793+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000122:340662..351793+ >TCONS_00011197 ID=TCONS_00011197|Name=TCONS_00011197|organism=Clytia hemisphaerica|type=CDS|length=30510bp|location=Sequence derived from alignment at sc0000122:340662..351793+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011197 vs. Swiss-Prot (Human)
Match: TKT (Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3) HSP 1 Score: 754.592 bits (1947), Expect = 0.000e+0 Identity = 367/612 (59.97%), Postives = 455/612 (74.35%), Query Frame = 1
Query: 160 ELYHCPDQKKIQNLKDVANKLRILSIKCTNAAGSGHPTSCCSMAELTSVLFFHTMKYKVSDPRDASSDRFVLSKGHSAPILYAAWCMAGLFSEDELMQLRKLGNDLEGHPTPRLNFVDVATGSLGQGLSCSAGMAYTGKYLDKGSYRVFCLMGDGESAEGSVMEAANFAGYYKLDNLVGIIDINRLGQSDPTSLQHEMDVYQKRWESYGWNAIVVDGHDIEAICRAYFDAEQANGRPTMILAKTYKGKGVPGVENEMNWHXXXXXXXXXXXXXXXXXQMVDKNVSGEKLNTQXXXXXXXXXXXSAIVLSEKPSYAADAKEATRKAYGLALAKLGRSSDRVVALDGDTKNSTFAITFQKEFPDRFVECFIAEQNMLGVGMGCATRDRTVAFASAFACFLSRGYDQIRMGAISQTKLKMAGSHVGVSIGEDGPSQMALEDLAMFRAINNCTVFYPSDAVSCERAVELCANTPNMCYIRTSRPATSILYGADEVFEAGKGKVVKQTASDFCLLIGAGVTLHECLKAHETLKAEGINTRVFDPFCIKPLDVQGIIANAKACNGNIVTIEDHYPEGGLGEAVLSAVAMETGIRVQRLAVTGLPRSGPSAALMEMFGV 1995
E YH PDQ+K+Q LKD AN+LRI SI+ T AAGSGHPTSCCS AE+ +VLFFHTM+YK DPR+ +DRFVLSKGH+APILYA W AG +E EL+ LRK+ +DL+GHP P+ F DVATGSLGQGL + GMAYTGKY DK SYRV+CL+GDGE +EGSV EA FA YKLDNLV I+DINRLGQSDP LQH+MD+YQKR E++GW+AI+VDGH +E +C+A+ QA +PT I+AKT+KG+G+ GVE++ +WHGK L + I + S +K+ +D VD + I + PSY K ATRKAYG ALAKLG +SDR++ALDGDTKNSTF+ F+KE PDRF+EC+IAEQNM+ + +GCATR+RTV F S FA F +R +DQIRM AIS++ + + GSH GVSIGEDGPSQMALEDLAMFR++ TVFYPSD V+ E+AVEL ANT +C+IRTSRP +I+Y +E F+ G+ KVV ++ D +IGAGVTLHE L A E LK E IN RV DPF IKPLD + I+ +A+A G I+T+EDHY EGG+GEAV SAV E GI V LAV +PRSG A L++MFG+
Sbjct: 2 ESYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAF---GQAKHQPTAIIAKTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQ---SKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNRVPRSGKPAELLKMFGI 607 The following BLAST results are available for this feature:
BLAST of TCONS_00011197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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