TCONS_00011188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011188
Unique NameTCONS_00011188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011188 ID=TCONS_00011188|Name=TCONS_00011188|organism=Clytia hemisphaerica|type=transcript|length=617bp
GGCAGTACATTTCCCTTTTTCAACGTCGCACTGTCCATTACATTTGAAGA
AATCACAATCTGAATCACTATTGCAGTCTGGTTGAACTAGAATCTCCTCA
ATCCGATCTGGCGAGTATATCAAATCCACATCAATAGCCTTGACATTCAA
ATCTCTGGTTAATCCAAAATTCGCTTCTTGCACATCACAATGGTGTAACC
GGCCTACTCCTGAACGTTCAAACTCCATGATGAGGTGTAGGAAATTCTTG
GCAATTCTGACACGTTTTTTCCAAGGCATCGATGGAGTCAGCTGCGGGAA
AAAGTCTGAATAAGGTTGTATTCTTTCCATGCCGTATACAGGACCGCATG
TGCCCAGTAGCTTTGGGAAACTATCCATATCTTGGTGTATTGCCATCACG
ACTAATTCATCCTGACCTATTAGGTACCATGAATTTCTGAGCTGATCCAG
AGTTAACCGTTCCACTTGTAAACCAAATAAAAGTCGAGAGATTTTCTTGA
AGTTCttaagaaaaagtttttgactGTCTTGTCCGAAAATGGATCGTACA
TCGTCCGAAAAACGATCAATGTAAGCTTGGTGTACTTCCTCCATCGTGCT
TGTTCGCTTAATCGATT
Run BLAST on NCBI

transcript from alignment at sc0000122:177544..178215+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011188 ID=TCONS_00011188|Name=TCONS_00011188|organism=Clytia hemisphaerica|type=transcript|length=672bp|location=Sequence derived from alignment at sc0000122:177544..178215+ (Clytia hemisphaerica)
GGCAGTACATTTCCCTTTTTCAACGTCGCACTGTCCATTACATTTGAAGA
AATCACAATCTGAATCACTATTGCAGTCTGGTTGAACTAGAATCTCCTCA
ATCCGATCTGGCGAGTATATCAAATCCACATCAATAGCCTTGACATTCAA
ATCTCTGGTTAATCCAAAATTCNATCAAATCCACATCAATAGCCTTGACA
TTCAAATCTCTGGTTAATCCAAAATTCGCTTCTTGCACATCACAATGGTG
TAACCGGCCTACTCCTGAACGTTCAAACTCCATGATGAGGTGTAGGAAAT
TCTTGGCAATTCTGACACGTTTTTTCCAAGGCATCGATGGAGTCAGCTGC
GGGAAAAAGTCTGAATAAGGTTGTATTCTTTCCATGCCGTATACAGGACC
GCATGTGCCCAGTAGCTTTGGGAAACTATCCATATCTTGGTGTATTGCCA
TCACGACTAATTCATCCTGACCTATTAGGTACCATGAATTTCTGAGCTGA
TCCAGAGTTAACCGTTCCACTTGTAAACCAAATAAAAGTCGAGAGATTTT
CTTGAAGTTCttaagaaaaagtttttgactGTCTTGTCCGAAAATGGATC
GTACATCGTCCGAAAAACGATCAATGTAAGCTTGGTGTACTTCCTCCATC
GTGCTTGTTCGCTTAATCGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006268XLOC_006268Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011188-exon-sc0000122-1491911889:177544..177687TCONS_00011188-exon-sc0000122-1491911889:177544..177687Clytia hemisphaericaexon
TCONS_00011188-exon-sc0000122-1510915933:177544..177687TCONS_00011188-exon-sc0000122-1510915933:177544..177687Clytia hemisphaericaexon
TCONS_00011188-exon-sc0000122-1575043694:177544..177687TCONS_00011188-exon-sc0000122-1575043694:177544..177687Clytia hemisphaericaexon
TCONS_00011188-exon-sc0000122-1491911889:177743..178215TCONS_00011188-exon-sc0000122-1491911889:177743..178215Clytia hemisphaericaexon
TCONS_00011188-exon-sc0000122-1510915933:177743..178215TCONS_00011188-exon-sc0000122-1510915933:177743..178215Clytia hemisphaericaexon
TCONS_00011188-exon-sc0000122-1575043694:177743..178215TCONS_00011188-exon-sc0000122-1575043694:177743..178215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:177544..178215 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.69961	0	0.656541	6.05178	4.46541	5.25964	5.65318	2.65305	0.177646	2.53112	1.51715e-05	1.50569	3.65469	0.817219	0.247763	0	3.35058	2.08678	1.67144	8.58047e-06	3.26831	1.02843	3.68676	10.3719	13.4511	3.85346	2.06263	2.59831	2.91598
Blast
[Close]
BLAST of TCONS_00011188 vs. Swiss-Prot (Human)
Match: FA69C (Protein FAM69C OS=Homo sapiens GN=FAM69C PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 3.037e-21
Identity = 55/158 (34.81%), Postives = 82/158 (51.90%), Query Frame = -3 
Query:    1 QLRNSWYLIGQDELVVMAIHQDMDSFP-KLLGTCGPVYGMERIQPYSD----FFP-QLTPSMPWKKRVR----IAKNFLHLIMEFERSGVGRLHHCDVQEANFGLTRDLNVKAIDVDLIYSPDRIEEILVQPDCNSDSDCDFFKCNGQCDVEKGKCTA 444
            QL + W L+ Q+E V  ++ QD+      +LG+CG  Y +E +   S      FP    P  P   + +    IA +FL ++  F+     RLH CD++  NF +  D  V AIDVD+ +   ++ EIL Q +C  D DC+FF C  +CD+   KC A
Sbjct:  183 QLASLWALLQQEEYVYFSLLQDLSPHVLPVLGSCGHFYAVEFLAAGSPHHRALFPLDRAPGAPGGGQAKAISDIALSFLDMVNHFDSDFSHRLHLCDIKPENFAIRSDFTVVAIDVDMAFFEPKMREILEQ-NCTGDEDCNFFDCFSRCDLRVNKCGA 339
The following BLAST results are available for this feature:
BLAST of TCONS_00011188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FA69C3.037e-2134.81Protein FAM69C OS=Homo sapiens GN=FAM69C PE=2 SV=3[more]
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