TCONS_00011187 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011187
Unique NameTCONS_00011187
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011187 ID=TCONS_00011187|Name=TCONS_00011187|organism=Clytia hemisphaerica|type=transcript|length=630bp
TGGTCAGTTGTTTGGCAGTACATTTCCCTTTTTCAACGTCGCACTGTCCA
TTACATTTGAAGAAATCACAATCTGAATCACTATTGCAGTCTGGTTGAAC
TAGAATCTCCTCAATCCGATCTGGCGAGTATATCAAATCCACATCAATAG
CCTTGACATTCAAATCTCTGGTTAATCCAAAATTCGCTTCTTGCACATCA
CAATGGTGTAACCGGCCTACTCCTGAACGTTCAAACTCCATGATGAGGTG
TAGGAAATTCTTGGCAATTCTGACACGTTTTTTCCAAGGCATCGATGGAG
TCAGCTGCGGGAAAAAGTCTGAATAAGGTTGTATTCTTTCCATGCCGTAT
ACAGGACCGCATGTGCCCAGTAGCTTTGGGAAACTATCCATATCTTGGTG
TATTGCCATCACGACTAATTCATCCTGACCTATTAGGTACCATGAATTTC
TGAGCTGATCCAGAGTTAACCGTTCCACTTGTAAACCAAATAAAAGTCGA
GAGATTTTCTTGAAGTTCttaagaaaaagtttttgactGTCTTGTCCGAA
AATGGATCGTACATCGTCCGAAAAACGATCAATGTAAGCTTGGTGTACTT
CCTCCATCGTGCTTGTTCGCTTAATCGATT
Run BLAST on NCBI

transcript from alignment at sc0000122:177531..178215+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011187 ID=TCONS_00011187|Name=TCONS_00011187|organism=Clytia hemisphaerica|type=transcript|length=685bp|location=Sequence derived from alignment at sc0000122:177531..178215+ (Clytia hemisphaerica)
TGGTCAGTTGTTTGGCAGTACATTTCCCTTTTTCAACGTCGCACTGTCCA
TTACATTTGAAGAAATCACAATCTGAATCACTATTGCAGTCTGGTTGAAC
TAGAATCTCCTCAATCCGATCTGGCGAGTATATCAAATCCACATCAATAG
CCTTGACATTCAAATCTCTGGTTAATCCAAAATTCNATCAAATCCACATC
AATAGCCTTGACATTCAAATCTCTGGTTAATCCAAAATTCGCTTCTTGCA
CATCACAATGGTGTAACCGGCCTACTCCTGAACGTTCAAACTCCATGATG
AGGTGTAGGAAATTCTTGGCAATTCTGACACGTTTTTTCCAAGGCATCGA
TGGAGTCAGCTGCGGGAAAAAGTCTGAATAAGGTTGTATTCTTTCCATGC
CGTATACAGGACCGCATGTGCCCAGTAGCTTTGGGAAACTATCCATATCT
TGGTGTATTGCCATCACGACTAATTCATCCTGACCTATTAGGTACCATGA
ATTTCTGAGCTGATCCAGAGTTAACCGTTCCACTTGTAAACCAAATAAAA
GTCGAGAGATTTTCTTGAAGTTCttaagaaaaagtttttgactGTCTTGT
CCGAAAATGGATCGTACATCGTCCGAAAAACGATCAATGTAAGCTTGGTG
TACTTCCTCCATCGTGCTTGTTCGCTTAATCGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006268XLOC_006268Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011187-exon-sc0000122-1491911889:177531..177672TCONS_00011187-exon-sc0000122-1491911889:177531..177672Clytia hemisphaericaexon
TCONS_00011187-exon-sc0000122-1510915933:177531..177672TCONS_00011187-exon-sc0000122-1510915933:177531..177672Clytia hemisphaericaexon
TCONS_00011187-exon-sc0000122-1575043694:177531..177672TCONS_00011187-exon-sc0000122-1575043694:177531..177672Clytia hemisphaericaexon
TCONS_00011187-exon-sc0000122-1491911889:177728..178215TCONS_00011187-exon-sc0000122-1491911889:177728..178215Clytia hemisphaericaexon
TCONS_00011187-exon-sc0000122-1510915933:177728..178215TCONS_00011187-exon-sc0000122-1510915933:177728..178215Clytia hemisphaericaexon
TCONS_00011187-exon-sc0000122-1575043694:177728..178215TCONS_00011187-exon-sc0000122-1575043694:177728..178215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:177531..178215 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.77658	0	0.888691	0	0	0	0	0	0.751905	2.71173	0	1.06794	0.00366508	0	0.000110136	0.792647	0	0	0	0	2.03323	0	0	0	0	0	0	0	0	0.238675
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022049FAM69_kinase_dom
Blast
[Close]
BLAST of TCONS_00011187 vs. Swiss-Prot (Human)
Match: FA69C (Protein FAM69C OS=Homo sapiens GN=FAM69C PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 1.002e-21
Identity = 55/162 (33.95%), Postives = 85/162 (52.47%), Query Frame = -3 
Query:    2 QLRNSWYLIGQDELVVMAIHQDMDSFP-KLLGTCGPVYGMERIQPYSD----FFP-QLTPSMPWKKRVR----IAKNFLHLIMEFERSGVGRLHHCDVQEANFGLTRDLNVKAIDVDLIYSPDRIEEILVQPDCNSDSDCDFFKCNGQCDVEKGKCTAKQLT 457
            QL + W L+ Q+E V  ++ QD+      +LG+CG  Y +E +   S      FP    P  P   + +    IA +FL ++  F+     RLH CD++  NF +  D  V AIDVD+ +   ++ EIL Q +C  D DC+FF C  +CD+   KC A+++ 
Sbjct:  183 QLASLWALLQQEEYVYFSLLQDLSPHVLPVLGSCGHFYAVEFLAAGSPHHRALFPLDRAPGAPGGGQAKAISDIALSFLDMVNHFDSDFSHRLHLCDIKPENFAIRSDFTVVAIDVDMAFFEPKMREILEQ-NCTGDEDCNFFDCFSRCDLRVNKCGAQRVN 343
The following BLAST results are available for this feature:
BLAST of TCONS_00011187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FA69C1.002e-2133.95Protein FAM69C OS=Homo sapiens GN=FAM69C PE=2 SV=3[more]
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